Wall clock time and date at job start Mon Mar 30 2020 00:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35363 * 119.25481 * 2 1 4 4 C 1.39835 * 120.09221 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.64409 * 180.02562 * 4 3 2 6 6 C 1.39319 * 118.70455 * 0.02562 * 4 3 2 7 7 C 1.47096 * 120.70459 * 180.02562 * 6 4 3 8 8 O 1.21649 * 119.99745 * 90.00267 * 7 6 4 9 9 N 1.34773 * 120.00606 * 270.00340 * 7 6 4 10 10 C 1.46495 * 120.00465 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47082 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46919 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99948 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00078 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00584 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99987 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47622 * 89.99433 * 16 14 12 18 18 H 1.48501 * 109.47424 * 209.99680 * 16 14 12 19 19 H 1.48500 * 109.47127 * 329.99683 * 16 14 12 20 20 C 1.41995 * 118.58714 * 0.02562 * 6 4 3 21 21 O 1.21785 * 120.10422 * 180.02562 * 20 6 4 22 22 O 1.33828 * 119.24725 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47580 * 89.99240 * 1 2 3 24 24 H 1.09002 * 109.47359 * 209.99971 * 1 2 3 25 25 H 1.09005 * 109.46658 * 329.99548 * 1 2 3 26 26 H 1.08005 * 119.95176 * 0.26197 * 3 2 1 27 27 H 1.08995 * 109.47545 * 90.00415 * 5 4 3 28 28 H 1.09008 * 109.46997 * 209.99876 * 5 4 3 29 29 H 1.08996 * 109.47676 * 329.99677 * 5 4 3 30 30 H 0.97005 * 119.99297 * 359.97438 * 9 7 6 31 31 H 1.09007 * 109.46868 * 299.99195 * 10 9 7 32 32 H 1.08992 * 109.47635 * 59.99522 * 10 9 7 33 33 H 1.08996 * 109.47289 * 299.99385 * 11 10 9 34 34 H 1.08997 * 109.47065 * 60.00202 * 11 10 9 35 35 H 0.96999 * 120.00387 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1685 1.1810 0.0000 4 6 3.5667 1.2014 0.0005 5 6 4.3158 2.5090 0.0011 6 6 4.2537 -0.0107 0.0005 7 6 5.7243 -0.0405 0.0017 8 8 6.3316 -0.0534 1.0557 9 7 6.3991 -0.0536 -1.1649 10 6 7.8637 -0.0839 -1.1638 11 6 8.3747 -0.0940 -2.6059 12 6 9.8814 -0.1245 -2.6047 13 1 10.4205 -0.1360 -1.6689 14 6 10.5716 -0.1389 -3.7981 15 7 11.8866 -0.1650 -3.7972 16 14 9.6392 -0.1197 -5.4166 17 1 9.4208 1.2851 -5.8456 18 1 10.4280 -0.8362 -6.4509 19 1 8.3273 -0.7929 -5.2401 20 6 3.5039 -1.2165 -0.0006 21 8 4.0761 -2.2916 -0.0002 22 8 2.1609 -1.1677 0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6156 2.1088 0.0043 27 1 4.4961 2.8241 1.0289 28 1 5.2689 2.3820 -0.5124 29 1 3.7245 3.2668 -0.5128 30 1 5.9148 -0.0437 -2.0054 31 1 8.2449 0.7982 -0.6491 32 1 8.2082 -0.9814 -0.6503 33 1 7.9936 -0.9762 -3.1202 34 1 8.0303 0.8034 -3.1197 35 1 12.3721 -0.1755 -4.6368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338050928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:10 Heat of formation + Delta-G solvation = -118.810938 kcal Electronic energy + Delta-G solvation = -19536.590442 eV Core-core repulsion = 16306.213117 eV Total energy + Delta-G solvation = -3230.377325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.21061 -40.77049 -39.12781 -37.07650 -36.66630 -34.83305 -33.75894 -32.13798 -30.17798 -28.80407 -26.86287 -25.30805 -23.15007 -22.82156 -22.29428 -19.57218 -19.37785 -19.00646 -18.13661 -17.66930 -17.10424 -16.52548 -16.34787 -16.23951 -15.14884 -15.06498 -14.80280 -14.76310 -14.59208 -14.47448 -14.23577 -13.79418 -13.41314 -13.30183 -13.28582 -13.06848 -12.79687 -12.32837 -12.21051 -11.80236 -11.66346 -11.54317 -11.49181 -11.11038 -10.80852 -10.19460 -9.48762 -8.32197 -6.39836 -0.85441 0.45149 0.98672 1.36255 1.40229 1.48916 1.51414 1.89502 2.24053 2.34993 3.02364 3.07917 3.25346 3.52967 3.83403 3.96907 4.25087 4.33278 4.35972 4.38480 4.57434 4.67656 4.68236 4.73166 4.88092 4.99926 5.07117 5.12106 5.25243 5.31690 5.34796 5.58425 5.95677 6.19009 6.28499 6.42372 6.67194 7.07123 7.24631 8.84653 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.028586 B = 0.004154 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.278959 B = 6738.212928 C = 6822.956103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.165 3.835 3 C -0.251 4.251 4 C 0.112 3.888 5 C -0.140 4.140 6 C -0.351 4.351 7 C 0.587 3.413 8 O -0.582 6.582 9 N -0.705 5.705 10 C 0.143 3.857 11 C -0.011 4.011 12 C -0.541 4.541 13 H 0.030 0.970 14 C 0.006 3.994 15 N -0.949 5.949 16 Si 0.959 3.041 17 H -0.258 1.258 18 H -0.285 1.285 19 H -0.244 1.244 20 C 0.513 3.487 21 O -0.527 6.527 22 O -0.264 6.264 23 H 0.122 0.878 24 H 0.091 0.909 25 H 0.138 0.862 26 H 0.215 0.785 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.411 0.589 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.868 8.973 3.492 33.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 C -0.269 4.269 4 C 0.110 3.890 5 C -0.195 4.195 6 C -0.356 4.356 7 C 0.373 3.627 8 O -0.462 6.462 9 N -0.355 5.355 10 C 0.020 3.980 11 C -0.049 4.049 12 C -0.579 4.579 13 H 0.048 0.952 14 C -0.191 4.191 15 N -0.589 5.589 16 Si 0.781 3.219 17 H -0.182 1.182 18 H -0.211 1.211 19 H -0.167 1.167 20 C 0.368 3.632 21 O -0.421 6.421 22 O -0.172 6.172 23 H 0.140 0.860 24 H 0.110 0.890 25 H 0.156 0.844 26 H 0.232 0.768 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.247 0.753 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -31.087 8.264 4.123 32.430 hybrid contribution 0.912 -0.519 -0.739 1.284 sum -30.175 7.744 3.384 31.336 Atomic orbital electron populations 1.21397 0.81122 1.07393 1.06901 1.23843 0.96950 0.81515 0.85983 1.21440 0.91987 1.00486 1.12974 1.21241 0.94884 0.94034 0.78839 1.21293 1.00525 0.92639 1.05091 1.20806 0.93763 0.94750 1.26272 1.17722 0.86679 0.74792 0.83507 1.90756 1.70880 1.51697 1.32876 1.46083 1.07722 1.73141 1.08533 1.21135 0.77732 1.00207 0.98921 1.19642 0.94675 0.98058 0.92492 1.21218 0.91344 1.51805 0.93530 0.95190 1.26062 0.95700 0.93558 1.03809 1.70069 1.08502 1.51776 1.28535 0.85542 0.79444 0.79571 0.77369 1.18239 1.21074 1.16742 1.18836 0.78833 0.89471 0.76090 1.91003 1.65229 1.33920 1.51911 1.83431 1.23511 1.36660 1.73644 0.85972 0.89043 0.84375 0.76843 0.87874 0.92145 0.85103 0.75305 0.92508 0.94456 0.95205 0.93963 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.02 10.18 71.24 0.73 0.74 16 2 C 0.17 1.77 6.95 25.02 0.17 1.94 16 3 C -0.25 -2.18 9.28 21.99 0.20 -1.97 16 4 C 0.11 2.01 5.97 -19.22 -0.11 1.89 16 5 C -0.14 -1.98 9.68 71.23 0.69 -1.29 16 6 C -0.35 -10.51 5.67 -19.76 -0.11 -10.62 16 7 C 0.59 22.85 5.41 86.57 0.47 23.32 16 8 O -0.58 -27.69 17.11 -4.19 -0.07 -27.76 16 9 N -0.70 -26.37 5.55 -466.69 -2.59 -28.96 16 10 C 0.14 6.43 5.61 86.38 0.48 6.92 16 11 C -0.01 -0.52 4.16 29.85 0.12 -0.39 16 12 C -0.54 -31.96 9.66 25.60 0.25 -31.71 16 13 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 14 C 0.01 0.35 5.47 84.65 0.46 0.82 16 15 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 16 Si 0.96 43.41 27.47 68.60 1.88 45.30 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 20 C 0.51 16.72 7.98 68.75 0.55 17.26 16 21 O -0.53 -22.60 17.42 18.93 0.33 -22.27 16 22 O -0.26 -5.98 9.79 24.68 0.24 -5.74 16 23 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 24 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 25 H 0.14 -0.89 8.06 -2.38 -0.02 -0.91 16 26 H 0.21 -0.39 8.06 -2.91 -0.02 -0.41 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.21 7.16 -2.38 -0.02 1.20 16 29 H 0.13 0.69 8.10 -2.39 -0.02 0.67 16 30 H 0.41 12.78 8.46 -92.70 -0.78 12.00 16 31 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 34 H 0.04 1.80 7.57 -2.39 -0.02 1.78 16 35 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -90.31 309.69 4.27 -86.04 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.28 Total: 6.39 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 3.90 Total: 6.91 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -2.29 Total: -88.86 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: 0.50 Total: -55.78 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Total: -90.31 4.27 -86.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338050928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.771 kcal (2) G-P(sol) polarization free energy of solvation -90.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds