Wall clock time and date at job start Mon Mar 30 2020 00:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47071 * 269.99899 * 3 2 1 5 5 H 1.48504 * 109.47207 * 29.99700 * 3 2 1 6 6 H 1.48500 * 109.47068 * 149.99616 * 3 2 1 7 7 C 1.37878 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46830 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46804 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46772 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00328 * 0.02562 * 12 11 10 14 14 O 1.34227 * 119.99844 * 180.02562 * 12 11 10 15 15 C 1.45201 * 117.00108 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47160 * 180.02562 * 15 14 12 17 17 C 1.38679 * 120.40602 * 269.97071 * 16 15 14 18 18 C 1.38631 * 118.44283 * 180.02562 * 17 16 15 19 19 C 1.38204 * 119.17953 * 359.78814 * 18 17 16 20 20 N 1.31974 * 120.74509 * 0.46965 * 19 18 17 21 21 O 1.41605 * 119.14917 * 179.77289 * 20 19 18 22 22 C 1.31997 * 121.69899 * 359.49321 * 20 19 18 23 23 H 0.96997 * 120.00351 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47354 * 59.99952 * 9 7 2 25 25 H 1.09000 * 109.46971 * 299.99524 * 9 7 2 26 26 H 1.08995 * 109.47164 * 59.99868 * 10 9 7 27 27 H 1.09000 * 109.46981 * 299.99550 * 10 9 7 28 28 H 1.08996 * 109.46572 * 60.00289 * 11 10 9 29 29 H 1.09000 * 109.47271 * 299.99724 * 11 10 9 30 30 H 1.08995 * 109.47307 * 59.99627 * 15 14 12 31 31 H 1.09006 * 109.46873 * 299.99859 * 15 14 12 32 32 H 1.08001 * 120.77797 * 0.05279 * 17 16 15 33 33 H 1.08008 * 120.41108 * 180.02562 * 18 17 16 34 34 H 1.07992 * 119.62780 * 180.24195 * 19 18 17 35 35 H 1.07996 * 119.62530 * 180.25225 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0005 13 8 3.6475 -5.9117 0.0001 14 8 2.0122 -7.3980 0.0004 15 6 3.0122 -8.4508 0.0004 16 6 2.3281 -9.7935 -0.0004 17 6 2.0095 -10.4196 1.1953 18 6 1.3810 -11.6543 1.1471 19 6 1.0904 -12.2150 -0.0822 20 7 1.4127 -11.5928 -1.2006 21 8 1.1033 -12.2004 -2.4417 22 6 2.0110 -10.4163 -1.1921 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8895 28 1 0.8534 -5.0450 -0.8886 29 1 0.8539 -5.0446 0.8914 30 1 3.6350 -8.3604 0.8903 31 1 3.6350 -8.3602 -0.8896 32 1 2.2452 -9.9560 2.1419 33 1 1.1182 -12.1700 2.0590 34 1 0.5974 -13.1747 -0.1282 35 1 2.2559 -9.9352 -2.1275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342711706.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:14 Heat of formation + Delta-G solvation = -68.511566 kcal Electronic energy + Delta-G solvation = -18511.808002 eV Core-core repulsion = 15283.611822 eV Total energy + Delta-G solvation = -3228.196180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.41866 -41.47481 -37.98263 -36.15939 -35.84830 -34.10760 -33.56835 -31.23459 -30.15641 -28.35131 -25.99478 -25.18499 -23.85349 -22.71250 -21.37626 -19.00507 -18.79488 -18.55123 -18.38504 -17.51686 -17.44634 -16.70065 -16.43416 -16.38757 -15.75049 -15.55964 -14.97688 -14.44721 -14.26146 -13.88033 -13.80238 -13.17505 -13.04633 -12.87682 -12.64614 -12.51017 -12.41944 -12.17902 -11.82272 -11.67297 -11.54639 -11.37923 -11.16367 -10.78172 -10.66125 -10.53194 -10.02898 -8.19345 -6.29091 -0.58021 -0.40046 1.18482 1.38766 1.41889 1.42233 1.53416 1.64051 2.24853 2.42916 3.14485 3.23021 3.33787 3.44788 3.64565 3.73320 3.87244 4.10686 4.17874 4.22510 4.30725 4.42285 4.67403 4.70559 4.86109 4.93342 4.96130 5.07449 5.16997 5.29810 5.55197 5.74013 5.75388 5.81263 5.88139 6.27403 6.72634 6.87375 7.39870 8.92194 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.046958 B = 0.002675 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.136237 B =10466.261048 C =10569.108023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.087 4.087 11 C -0.107 4.107 12 C 0.477 3.523 13 O -0.532 6.532 14 O -0.354 6.354 15 C 0.103 3.897 16 C -0.094 4.094 17 C -0.032 4.032 18 C -0.094 4.094 19 C 0.075 3.925 20 N -0.151 5.151 21 O -0.634 6.634 22 C 0.085 3.915 23 H 0.264 0.736 24 H 0.001 0.999 25 H 0.005 0.995 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.197 0.803 33 H 0.220 0.780 34 H 0.197 0.803 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.907 -22.796 8.853 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.125 4.125 11 C -0.145 4.145 12 C 0.321 3.679 13 O -0.421 6.421 14 O -0.271 6.271 15 C 0.030 3.970 16 C -0.095 4.095 17 C -0.057 4.057 18 C -0.112 4.112 19 C -0.070 4.070 20 N 0.168 4.832 21 O -0.686 6.686 22 C -0.061 4.061 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.023 0.977 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.215 0.785 33 H 0.237 0.763 34 H 0.214 0.786 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.030 -22.877 8.427 24.711 hybrid contribution 0.285 0.864 -0.821 1.226 sum 4.315 -22.013 7.606 23.686 Atomic orbital electron populations 1.70065 1.07543 1.27781 1.51664 1.25899 0.95770 1.03082 0.94800 0.85517 0.78719 0.78813 0.78436 1.19956 1.20565 1.19006 1.21694 0.93478 0.92639 1.50552 0.92671 1.19025 0.94270 0.92246 0.95820 1.21279 0.97857 0.92101 1.01231 1.21525 0.97143 0.88642 1.07142 1.24040 0.89306 0.83588 0.70933 1.90667 1.19423 1.85454 1.46597 1.86572 1.40938 1.15394 1.84214 1.21870 0.88712 0.80276 1.06171 1.20007 1.01017 0.96153 0.92330 1.22435 0.90423 0.93507 0.99345 1.22446 0.95789 0.95163 0.97817 1.23452 0.97706 1.01203 0.84598 1.43269 1.20787 1.09446 1.09681 1.97626 1.88329 1.74951 1.07706 1.22659 0.94811 0.86434 1.02188 0.92711 0.98099 0.97689 0.92911 0.93396 0.86692 0.85934 0.86599 0.89248 0.78542 0.76302 0.78612 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -30.66 9.11 25.60 0.23 -30.42 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.09 -3.41 4.44 30.60 0.14 -3.28 16 11 C -0.11 -3.07 5.81 29.85 0.17 -2.90 16 12 C 0.48 12.65 7.96 71.24 0.57 13.22 16 13 O -0.53 -17.12 15.73 21.97 0.35 -16.78 16 14 O -0.35 -7.19 10.20 -51.38 -0.52 -7.72 16 15 C 0.10 1.43 5.61 71.24 0.40 1.83 16 16 C -0.09 -1.07 5.54 -19.78 -0.11 -1.18 16 17 C -0.03 -0.12 9.86 22.47 0.22 0.10 16 18 C -0.09 -0.21 10.11 22.36 0.23 0.02 16 19 C 0.08 0.93 10.69 84.66 0.91 1.83 16 20 N -0.15 -3.61 3.58 -195.73 -0.70 -4.31 16 21 O -0.63 -25.53 20.06 -38.80 -0.78 -26.31 16 22 C 0.08 1.59 10.37 84.65 0.88 2.47 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.05 2.11 8.10 -2.39 -0.02 2.09 16 27 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 28 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.12 3.04 8.14 -2.39 -0.02 3.03 16 30 H 0.12 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 32 H 0.20 -0.63 8.06 -2.91 -0.02 -0.65 16 33 H 0.22 -1.67 8.06 -2.91 -0.02 -1.70 16 34 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -88.46 316.88 5.97 -82.49 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: 1.08 Total: -1.86 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.24 Total: -16.41 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.42 Total: -59.30 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.96 Total: -50.80 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -88.46 5.97 -82.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342711706.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.976 kcal (2) G-P(sol) polarization free energy of solvation -88.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds