Wall clock time and date at job start Mon Mar 30 2020 00:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38374 * 119.40082 * 2 1 4 4 C 1.38308 * 119.46578 * 179.97438 * 3 2 1 5 5 C 1.50707 * 120.82967 * 179.97438 * 4 3 2 6 6 C 1.40054 * 118.34296 * 0.02562 * 4 3 2 7 7 C 1.47389 * 120.59880 * 179.97438 * 6 4 3 8 8 O 1.21512 * 119.99867 * 90.00146 * 7 6 4 9 9 O 1.34757 * 120.00012 * 269.99784 * 7 6 4 10 10 C 1.45198 * 117.00064 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46912 * 330.00597 * 10 9 7 12 12 C 1.53000 * 109.46967 * 90.00162 * 10 9 7 13 13 C 1.50694 * 109.47115 * 210.00126 * 10 9 7 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.40332 * 118.79651 * 0.25159 * 6 4 3 22 22 O 1.35404 * 119.80620 * 179.72615 * 21 6 4 23 23 N 1.31876 * 119.39949 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47243 * 89.99548 * 1 2 3 25 25 H 1.08993 * 109.46819 * 209.99946 * 1 2 3 26 26 H 1.09001 * 109.46964 * 329.99616 * 1 2 3 27 27 H 1.08000 * 120.26628 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.46671 * 270.02586 * 5 4 3 29 29 H 1.09000 * 109.47007 * 30.02205 * 5 4 3 30 30 H 1.08994 * 109.47124 * 150.02038 * 5 4 3 31 31 H 1.09000 * 109.47156 * 59.99715 * 12 10 9 32 32 H 1.08997 * 109.47359 * 180.02562 * 12 10 9 33 33 H 1.09007 * 109.47356 * 299.99990 * 12 10 9 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 0.96705 * 114.00230 * 90.00063 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2055 0.0000 4 6 3.5694 1.2071 0.0005 5 6 4.3403 2.5021 0.0000 6 6 4.2357 -0.0248 0.0005 7 6 5.7086 -0.0811 0.0005 8 8 6.3156 -0.1044 1.0528 9 8 6.3818 -0.1069 -1.1665 10 6 7.8308 -0.1629 -1.0906 11 1 8.1666 0.3380 -0.1826 12 6 8.2839 -1.6240 -1.0642 13 6 8.4238 0.5253 -2.2928 14 1 7.7766 0.9616 -3.0393 15 6 9.7928 0.5981 -2.4400 16 7 10.5810 0.0672 -1.5309 17 14 10.5279 1.4506 -3.9307 18 1 10.7121 0.4635 -5.0248 19 1 9.6134 2.5287 -4.3854 20 1 11.8427 2.0374 -3.5670 21 6 3.4757 -1.2044 -0.0054 22 8 4.0988 -2.4066 -0.0112 23 7 2.1544 -1.1489 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6409 2.1377 0.0004 28 1 4.5261 2.8138 -1.0279 29 1 3.7614 3.2697 0.5134 30 1 5.2908 2.3593 0.5139 31 1 7.9480 -2.1251 -1.9721 32 1 9.3716 -1.6662 -1.0067 33 1 7.8550 -2.1219 -0.1945 34 1 11.5441 0.1180 -1.6347 35 1 4.2796 -2.7601 0.8706 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343367889.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:30 Heat of formation + Delta-G solvation = -102.276545 kcal Electronic energy + Delta-G solvation = -20059.406719 eV Core-core repulsion = 16829.746380 eV Total energy + Delta-G solvation = -3229.660339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85935 -39.13207 -37.35088 -35.75560 -34.23218 -33.24698 -31.86242 -29.72730 -28.40016 -27.59939 -25.33054 -23.76190 -22.32914 -21.18386 -19.86280 -18.43663 -17.52619 -17.23464 -16.62461 -15.79349 -15.60851 -14.73140 -14.60845 -14.30423 -14.11562 -13.36438 -13.29459 -13.08109 -12.84705 -12.51813 -12.24899 -12.05239 -11.96147 -11.81806 -11.63885 -11.23964 -11.09331 -10.84783 -10.40733 -10.31442 -10.10260 -9.61588 -9.56690 -9.40358 -8.96040 -8.82261 -8.51016 -6.20213 -4.27250 0.74352 1.05019 2.72509 3.23848 3.25966 3.29572 3.32408 3.43641 3.74322 4.30592 4.40515 4.48528 4.90914 5.05237 5.12798 5.17586 5.28322 5.37770 5.43009 5.60249 5.61900 5.74605 5.85710 6.01760 6.12202 6.39058 6.61873 6.89339 6.90119 7.09531 7.43462 7.55526 7.69786 7.79354 7.87446 8.10786 8.53555 8.83487 9.38006 10.87234 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.029559 B = 0.005032 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.026324 B = 5563.455469 C = 5967.452656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.163 3.837 3 C -0.188 4.188 4 C 0.016 3.984 5 C -0.127 4.127 6 C -0.171 4.171 7 C 0.516 3.484 8 O -0.511 6.511 9 O -0.342 6.342 10 C 0.214 3.786 11 H 0.047 0.953 12 C -0.154 4.154 13 C -0.521 4.521 14 H 0.069 0.931 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.912 3.088 18 H -0.277 1.277 19 H -0.271 1.271 20 H -0.284 1.284 21 C 0.359 3.641 22 O -0.471 6.471 23 N -0.507 5.507 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.100 0.900 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.750 2.346 3.926 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.025 3.975 3 C -0.208 4.208 4 C 0.009 3.991 5 C -0.184 4.184 6 C -0.176 4.176 7 C 0.358 3.642 8 O -0.401 6.401 9 O -0.257 6.257 10 C 0.162 3.838 11 H 0.065 0.935 12 C -0.212 4.212 13 C -0.559 4.559 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.739 3.261 18 H -0.203 1.203 19 H -0.196 1.196 20 H -0.209 1.209 21 C 0.180 3.820 22 O -0.279 6.279 23 N -0.228 5.228 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.163 0.837 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -16.732 1.553 3.652 17.196 hybrid contribution 1.161 0.856 -0.199 1.456 sum -15.571 2.409 3.453 16.130 Atomic orbital electron populations 1.20772 0.88183 1.03707 1.03482 1.21155 0.96904 0.87130 0.92263 1.21728 0.93394 0.99588 1.06062 1.20296 0.93703 0.94222 0.90902 1.20988 1.00410 0.92742 1.04239 1.20393 0.92849 0.94442 1.09911 1.20496 0.87301 0.72747 0.83703 1.90816 1.69768 1.46373 1.33176 1.86674 1.26949 1.80792 1.31316 1.20727 0.68929 0.94902 0.99271 0.93506 1.22152 1.04745 0.96413 0.97861 1.21011 0.91510 1.36710 1.06690 0.91296 1.24883 0.96429 0.95478 0.97101 1.69900 1.04343 1.44238 1.34154 0.86264 0.78353 0.79607 0.81858 1.20306 1.19620 1.20933 1.18948 0.86264 0.84375 0.92445 1.84740 1.76648 1.32407 1.34100 1.67049 1.08883 1.30372 1.16449 0.89940 0.90219 0.90290 0.83730 0.89025 0.90173 0.90300 0.94287 0.88194 0.96446 0.92358 0.73591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 10.16 36.01 0.37 -0.45 16 2 C 0.16 2.00 6.78 -82.52 -0.56 1.44 16 3 C -0.19 -2.19 9.41 -39.51 -0.37 -2.56 16 4 C 0.02 0.24 5.95 -103.91 -0.62 -0.38 16 5 C -0.13 -1.68 9.69 36.01 0.35 -1.33 16 6 C -0.17 -3.11 5.78 -104.71 -0.61 -3.71 16 7 C 0.52 11.42 5.54 34.46 0.19 11.61 16 8 O -0.51 -12.29 16.37 -19.27 -0.32 -12.60 16 9 O -0.34 -8.56 9.87 -40.65 -0.40 -8.96 16 10 C 0.21 5.84 2.56 -27.89 -0.07 5.77 16 11 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 12 C -0.15 -4.00 9.33 37.16 0.35 -3.65 16 13 C -0.52 -14.74 8.90 -34.44 -0.31 -15.05 16 14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 17 Si 0.91 21.08 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.36 6.13 7.77 -16.59 -0.13 6.00 16 22 O -0.47 -7.77 13.01 -17.90 -0.23 -8.01 16 23 N -0.51 -7.75 10.28 -9.19 -0.09 -7.85 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 27 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 30 H 0.08 1.24 7.19 -51.93 -0.37 0.86 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.41 4.73 9.06 45.56 0.41 5.14 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -33.39 309.43 -5.85 -39.24 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.57 Total: 2.72 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.50 Total: -0.67 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.53 Total: -32.44 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.95 Total: -29.57 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.39 -5.85 -39.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343367889.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.036 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds