Wall clock time and date at job start Mon Mar 30 2020 00:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.46960 * 2 1 4 4 N 1.33652 * 126.27994 * 270.32636 * 3 2 1 5 5 C 1.30634 * 109.01113 * 180.15084 * 4 3 2 6 6 O 1.33653 * 109.16874 * 359.56719 * 5 4 3 7 7 C 1.35361 * 107.68210 * 0.26518 * 6 5 4 8 8 C 1.46541 * 126.64983 * 179.97438 * 7 6 5 9 9 O 1.21613 * 119.99998 * 174.01035 * 8 7 6 10 10 O 1.34882 * 120.00071 * 354.00472 * 8 7 6 11 11 C 1.45198 * 116.99924 * 184.34946 * 10 8 7 12 12 C 1.52998 * 109.47166 * 182.48759 * 11 10 8 13 13 C 1.50695 * 115.54762 * 306.30348 * 12 11 10 14 14 H 1.08010 * 119.99725 * 144.75319 * 13 12 11 15 15 C 1.37877 * 120.00555 * 324.76047 * 13 12 11 16 16 N 1.31517 * 119.99589 * 347.98235 * 15 13 12 17 17 Si 1.86797 * 120.00173 * 167.98408 * 15 13 12 18 18 H 1.48498 * 109.47271 * 89.99942 * 17 15 13 19 19 H 1.48504 * 109.46962 * 209.99891 * 17 15 13 20 20 H 1.48502 * 109.47165 * 329.99683 * 17 15 13 21 21 C 1.53006 * 117.49979 * 160.64069 * 12 11 10 22 22 C 1.52999 * 117.49909 * 91.97827 * 12 11 10 23 23 H 1.08999 * 109.46987 * 60.00190 * 1 2 3 24 24 H 1.08998 * 109.46775 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46935 * 300.00150 * 1 2 3 26 26 H 1.08998 * 109.46831 * 240.00353 * 2 1 3 27 27 H 1.08999 * 109.46987 * 119.99810 * 2 1 3 28 28 H 1.07998 * 125.41593 * 179.83357 * 5 4 3 29 29 H 1.09001 * 109.47135 * 302.48658 * 11 10 8 30 30 H 1.08997 * 109.47316 * 62.47999 * 11 10 8 31 31 H 0.96993 * 119.99625 * 185.07559 * 16 15 13 32 32 H 1.09005 * 117.49685 * 359.97438 * 21 12 11 33 33 H 1.08993 * 117.50204 * 145.01829 * 21 12 11 34 34 H 1.09004 * 117.49570 * 214.97902 * 22 12 11 35 35 H 1.09002 * 117.50142 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2902 2.1685 -1.0774 5 6 2.7111 3.3428 -0.6896 6 8 2.7261 3.3845 0.6462 7 6 2.3015 2.1820 1.0999 8 6 2.1590 1.7762 2.5007 9 8 1.6624 0.7004 2.7747 10 8 2.5787 2.5958 3.4863 11 6 2.4959 2.0896 4.8447 12 6 2.9541 3.1740 5.8219 13 6 4.3120 3.7661 5.5456 14 1 4.4952 4.8122 5.7427 15 6 5.3205 2.9727 5.0412 16 7 5.1811 1.6651 5.0219 17 14 6.8849 3.7550 4.3854 18 1 7.8738 3.8822 5.4859 19 1 7.4501 2.9035 3.3080 20 1 6.5745 5.1012 3.8408 21 6 2.5300 3.0314 7.2851 22 6 1.8836 4.1010 6.4011 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.9970 4.1527 -1.3443 29 1 1.4655 1.8121 5.0669 30 1 3.1376 1.2144 4.9460 31 1 5.9180 1.1030 4.7360 32 1 1.9242 2.1652 7.5514 33 1 3.2330 3.3662 8.0478 34 1 2.1617 5.1392 6.5827 35 1 0.8530 3.9387 6.0857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357775957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:49 Heat of formation + Delta-G solvation = -57.555374 kcal Electronic energy + Delta-G solvation = -20342.282267 eV Core-core repulsion = 17114.561183 eV Total energy + Delta-G solvation = -3227.721084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.59165 -41.18277 -38.65343 -37.25921 -36.47914 -34.21277 -34.03962 -31.15414 -28.56459 -27.46247 -25.74425 -24.67375 -23.08993 -22.78474 -21.63325 -21.14886 -19.27440 -18.63479 -18.13854 -17.83698 -17.14901 -17.05453 -16.47061 -15.96920 -15.63592 -15.16380 -14.90736 -14.45765 -13.99349 -13.95406 -13.78678 -13.55684 -12.88933 -12.82778 -12.57132 -12.39762 -12.28256 -12.17969 -12.15991 -12.09985 -11.69941 -11.50546 -11.32240 -11.12697 -10.69065 -10.20525 -10.07986 -8.11759 -6.19955 -0.44115 1.19237 1.26332 1.37119 1.40599 1.50167 1.67045 2.05980 2.38815 2.98271 2.99645 3.46608 3.53089 3.77727 4.15602 4.17779 4.25239 4.33749 4.34115 4.43954 4.54047 4.70610 4.71277 4.89238 4.92466 4.95015 5.03878 5.15496 5.16524 5.27267 5.35446 5.49253 5.56208 5.78924 6.29483 6.34425 6.65459 6.79608 7.41373 8.88891 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.006964 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.636138 B = 4019.443109 C = 4763.285198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 C 0.098 3.902 4 N -0.512 5.512 5 C 0.233 3.767 6 O -0.192 6.192 7 C -0.125 4.125 8 C 0.541 3.459 9 O -0.509 6.509 10 O -0.332 6.332 11 C 0.125 3.875 12 C 0.004 3.996 13 C -0.499 4.499 14 H 0.056 0.944 15 C 0.032 3.968 16 N -0.907 5.907 17 Si 0.947 3.053 18 H -0.271 1.271 19 H -0.287 1.287 20 H -0.267 1.267 21 C -0.180 4.180 22 C -0.188 4.188 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.316 0.684 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.261 0.739 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 0.828 -10.956 12.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.093 4.093 3 C -0.025 4.025 4 N -0.241 5.241 5 C 0.009 3.991 6 O -0.078 6.078 7 C -0.178 4.178 8 C 0.387 3.613 9 O -0.401 6.401 10 O -0.247 6.247 11 C 0.052 3.948 12 C 0.003 3.997 13 C -0.536 4.536 14 H 0.074 0.926 15 C -0.168 4.168 16 N -0.545 5.545 17 Si 0.773 3.227 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.192 1.192 21 C -0.218 4.218 22 C -0.225 4.225 23 H 0.083 0.917 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.330 0.670 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.342 0.267 -11.514 13.148 hybrid contribution 1.075 0.518 0.742 1.405 sum -5.267 0.785 -10.772 12.017 Atomic orbital electron populations 1.21595 0.92318 1.03551 1.01501 1.20275 0.97873 0.86585 1.04524 1.22404 0.95606 0.98662 0.85840 1.70418 1.19150 1.04143 1.30344 1.29805 0.92605 0.97955 0.78698 1.84621 1.64245 1.33200 1.25728 1.21642 1.15914 0.87204 0.93057 1.19339 0.75267 0.82333 0.84410 1.90813 1.43228 1.22668 1.83441 1.86651 1.75174 1.44769 1.18071 1.22671 0.97870 0.98891 0.75325 1.19038 0.94039 0.95953 0.90624 1.20650 0.94825 0.95498 1.42632 0.92588 1.25573 1.01378 0.95097 0.94786 1.69915 1.32442 1.04131 1.48015 0.85707 0.79798 0.78774 0.78432 1.19686 1.21252 1.19184 1.22974 1.03440 1.00219 0.95185 1.23001 0.97300 0.95921 1.06282 0.91688 0.89485 0.94256 0.87749 0.90102 0.66999 0.93880 0.89547 0.92985 0.89747 0.89841 0.89658 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.90 71.98 0.71 -2.42 16 2 C -0.05 -1.51 5.87 29.85 0.18 -1.33 16 3 C 0.10 3.15 6.42 41.86 0.27 3.42 16 4 N -0.51 -14.00 11.25 -303.08 -3.41 -17.41 16 5 C 0.23 5.24 13.21 130.42 1.72 6.96 16 6 O -0.19 -6.41 10.79 -7.16 -0.08 -6.48 16 7 C -0.13 -4.75 7.25 24.02 0.17 -4.57 16 8 C 0.54 24.20 7.92 69.99 0.55 24.75 16 9 O -0.51 -22.96 14.62 19.47 0.28 -22.67 16 10 O -0.33 -16.60 9.88 -57.07 -0.56 -17.16 16 11 C 0.13 6.26 4.60 71.98 0.33 6.59 16 12 C 0.00 0.19 2.12 -52.93 -0.11 0.08 16 13 C -0.50 -27.28 8.76 25.60 0.22 -27.06 16 14 H 0.06 3.04 7.84 -2.91 -0.02 3.01 16 15 C 0.03 1.74 5.17 84.65 0.44 2.18 16 16 N -0.91 -51.31 10.83 21.45 0.23 -51.08 16 17 Si 0.95 43.48 29.56 68.60 2.03 45.50 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 C -0.18 -7.81 9.96 30.62 0.30 -7.50 16 22 C -0.19 -7.86 9.92 30.62 0.30 -7.56 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.08 2.54 6.61 -2.39 -0.02 2.53 16 28 H 0.32 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.04 1.98 7.99 -2.39 -0.02 1.96 16 30 H 0.09 4.79 6.06 -2.39 -0.01 4.78 16 31 H 0.26 14.22 8.32 -92.71 -0.77 13.45 16 32 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 33 H 0.08 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -67.16 309.35 4.69 -62.48 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 1.10 Total: 13.29 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.10 Total: -6.46 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -3.18 Total: -68.49 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -0.36 Total: -46.32 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -67.16 4.69 -62.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357775957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.921 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds