Wall clock time and date at job start Sun Mar 29 2020 23:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86809 * 119.99607 * 2 1 4 4 H 1.48498 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46973 * 299.99929 * 3 2 1 6 6 H 1.48503 * 109.46886 * 59.99798 * 3 2 1 7 7 C 1.40044 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00206 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00044 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99735 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00425 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00400 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47179 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47066 * 179.97438 * 13 12 11 15 15 C 1.38291 * 119.94012 * 89.99821 * 14 13 12 16 16 C 1.38119 * 120.05197 * 179.97438 * 15 14 13 17 17 C 1.38753 * 119.94752 * 0.02562 * 16 15 14 18 18 O 1.35903 * 120.05616 * 179.97438 * 17 16 15 19 19 C 1.38712 * 119.88708 * 359.97438 * 17 16 15 20 20 C 1.50696 * 120.02686 * 179.97438 * 19 17 16 21 21 O 1.42903 * 109.47131 * 179.97438 * 20 19 17 22 22 C 1.38165 * 119.94317 * 0.25353 * 19 17 16 23 23 H 0.97003 * 120.00323 * 0.02562 * 1 2 3 24 24 H 0.97004 * 119.99932 * 0.02562 * 11 9 7 25 25 H 1.08995 * 109.47303 * 59.99686 * 12 11 9 26 26 H 1.09002 * 109.46668 * 299.99840 * 12 11 9 27 27 H 1.09002 * 109.46994 * 59.99679 * 13 12 11 28 28 H 1.08995 * 109.46930 * 299.99812 * 13 12 11 29 29 H 1.08001 * 119.97334 * 359.97438 * 15 14 13 30 30 H 1.08000 * 120.02602 * 179.97438 * 16 15 14 31 31 H 0.96695 * 113.99694 * 270.01980 * 18 17 16 32 32 H 1.09008 * 109.47144 * 60.00506 * 20 19 17 33 33 H 1.08999 * 109.47358 * 300.00095 * 20 19 17 34 34 H 0.96700 * 114.00311 * 300.00591 * 21 20 19 35 35 H 1.08002 * 119.97261 * 179.74633 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7006 1.3466 0.0006 5 1 1.8818 2.3965 -1.2125 6 1 1.8818 2.3965 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6476 0.0005 12 6 1.2167 -4.9164 0.0000 13 6 2.2111 -6.0793 0.0007 14 6 1.4576 -7.3844 0.0008 15 6 1.1130 -7.9825 -1.1975 16 6 0.4230 -9.1790 -1.2002 17 6 0.0750 -9.7806 0.0008 18 8 -0.6044 -10.9575 0.0007 19 6 0.4218 -9.1786 1.2014 20 6 0.0450 -9.8289 2.5075 21 8 0.5102 -9.0234 3.5923 22 6 1.1080 -7.9794 1.1987 23 1 -0.4851 0.8400 -0.0004 24 1 2.9192 -3.6476 0.0009 25 1 0.5904 -4.9740 -0.8902 26 1 0.5898 -4.9743 0.8898 27 1 2.8371 -6.0214 0.8912 28 1 2.8383 -6.0215 -0.8887 29 1 1.3837 -7.5137 -2.1321 30 1 0.1537 -9.6455 -2.1363 31 1 -1.5661 -10.8565 0.0000 32 1 0.5022 -10.8167 2.5668 33 1 -1.0391 -9.9262 2.5655 34 1 1.4685 -8.8944 3.6038 35 1 1.3747 -7.5082 2.1332 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455319588.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:16 Heat of formation + Delta-G solvation = -150.962952 kcal Electronic energy + Delta-G solvation = -19020.980963 eV Core-core repulsion = 15789.209422 eV Total energy + Delta-G solvation = -3231.771541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10947 -39.44619 -38.07983 -37.76170 -35.66984 -34.54061 -32.80383 -32.22850 -29.48824 -27.91908 -26.98493 -24.42606 -23.02577 -21.76007 -21.68033 -19.44446 -19.19355 -18.14920 -17.46953 -17.14228 -16.87445 -16.30289 -15.95531 -15.80026 -15.67916 -15.15343 -14.85083 -14.64250 -14.44622 -14.02154 -13.54969 -13.16106 -13.10146 -12.88174 -12.78211 -12.70710 -12.50629 -12.19948 -12.07853 -11.96404 -11.63313 -11.11233 -10.94648 -9.90077 -9.81947 -9.49592 -9.39408 -8.29035 -6.85769 0.18427 0.32285 1.41393 1.41595 1.59930 2.25357 2.47213 2.54198 3.13522 3.28939 3.46745 3.61467 3.66550 3.91492 3.97294 4.20865 4.23041 4.37916 4.43165 4.51511 4.60581 4.71530 4.86611 4.92648 5.10570 5.11820 5.31603 5.32718 5.40044 5.63992 5.84500 5.88169 6.24302 6.26850 6.71820 6.80452 6.86899 7.56231 8.49301 8.67666 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.034786 B = 0.003402 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.718429 B = 8228.304798 C = 8513.290076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.245 1.245 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.572 4.572 8 H 0.091 0.909 9 C 0.534 3.466 10 O -0.636 6.636 11 N -0.755 5.755 12 C 0.144 3.856 13 C -0.073 4.073 14 C -0.092 4.092 15 C -0.107 4.107 16 C -0.147 4.147 17 C 0.101 3.899 18 O -0.503 6.503 19 C -0.160 4.160 20 C 0.129 3.871 21 O -0.580 6.580 22 C -0.102 4.102 23 H 0.274 0.726 24 H 0.398 0.602 25 H 0.028 0.972 26 H 0.025 0.975 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.408 0.592 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.392 0.608 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -19.143 0.688 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.168 1.168 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.609 4.609 8 H 0.109 0.891 9 C 0.338 3.662 10 O -0.523 6.523 11 N -0.410 5.410 12 C 0.020 3.980 13 C -0.110 4.110 14 C -0.093 4.093 15 C -0.125 4.125 16 C -0.165 4.165 17 C 0.057 3.943 18 O -0.316 6.316 19 C -0.161 4.161 20 C 0.051 3.949 21 O -0.388 6.388 22 C -0.120 4.120 23 H 0.084 0.916 24 H 0.232 0.768 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.163 0.837 31 H 0.267 0.733 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.241 0.759 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.870 -19.330 0.834 19.731 hybrid contribution 0.340 0.882 -0.317 0.997 sum 4.210 -18.448 0.517 18.929 Atomic orbital electron populations 1.70207 1.09656 1.28899 1.36589 1.27033 0.95535 1.05145 0.91179 0.84928 0.79390 0.75194 0.78473 1.16769 1.19386 1.19427 1.21485 0.94848 0.89968 1.54586 0.89132 1.18695 0.86858 0.84554 0.76095 1.90554 1.16423 1.88071 1.57288 1.45801 1.09429 1.04618 1.81136 1.20850 0.94581 0.83811 0.98804 1.20669 0.96538 0.89042 1.04800 1.19850 0.99611 0.96194 0.93598 1.21208 0.97911 0.95154 0.98261 1.21599 1.00724 0.95672 0.98547 1.18258 0.97926 0.86562 0.91599 1.84741 1.24570 1.25842 1.96416 1.21143 1.01820 0.96328 0.96819 1.21038 1.00552 0.92488 0.80798 1.86528 1.29554 1.73680 1.49042 1.20934 0.98130 0.94507 0.98446 0.91591 0.76799 0.95378 0.95610 0.89022 0.88941 0.84496 0.83665 0.73251 0.90613 0.87757 0.75855 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.17 11.83 21.83 0.26 -50.91 16 2 C 0.03 1.45 5.50 85.30 0.47 1.92 16 3 Si 1.00 40.97 29.56 68.60 2.03 43.00 16 4 H -0.24 -9.16 7.11 99.48 0.71 -8.46 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.57 -32.62 9.54 24.83 0.24 -32.38 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.53 31.55 7.75 86.36 0.67 32.22 16 10 O -0.64 -43.84 15.02 -4.32 -0.06 -43.90 16 11 N -0.75 -34.00 5.55 -467.41 -2.59 -36.60 16 12 C 0.14 5.65 5.66 86.38 0.49 6.14 16 13 C -0.07 -1.93 5.45 29.85 0.16 -1.77 16 14 C -0.09 -2.31 5.13 -19.85 -0.10 -2.41 16 15 C -0.11 -2.49 9.69 22.25 0.22 -2.27 16 16 C -0.15 -3.09 9.99 22.36 0.22 -2.87 16 17 C 0.10 2.09 6.68 22.51 0.15 2.24 16 18 O -0.50 -8.25 12.93 -92.46 -1.20 -9.45 16 19 C -0.16 -3.44 5.89 -19.77 -0.12 -3.56 16 20 C 0.13 2.32 6.92 71.23 0.49 2.81 16 21 O -0.58 -11.72 12.68 -148.98 -1.89 -13.61 16 22 C -0.10 -2.43 8.87 22.25 0.20 -2.23 16 23 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 24 H 0.40 14.91 8.45 -92.71 -0.78 14.13 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 28 H 0.09 2.15 8.08 -2.39 -0.02 2.13 16 29 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 30 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.41 3.14 9.06 -74.06 -0.67 2.46 16 32 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.39 5.23 8.13 -74.06 -0.60 4.63 16 35 H 0.14 3.03 6.60 -2.91 -0.02 3.01 16 Total: -1.00 -82.64 309.20 -1.28 -83.92 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.91 Total: 29.70 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 3.09 Total: -2.16 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -2.34 Total: -87.51 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -3.15 Total: -66.96 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -82.64 -1.28 -83.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455319588.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.038 kcal (2) G-P(sol) polarization free energy of solvation -82.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds