Wall clock time and date at job start Mon Mar 30 2020 00:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47127 * 2 1 4 4 H 1.09002 * 109.47378 * 54.99861 * 3 2 1 5 5 C 1.50697 * 109.47027 * 174.99848 * 3 2 1 6 6 H 1.08002 * 120.00110 * 120.00138 * 5 3 2 7 7 C 1.37876 * 120.00194 * 300.00091 * 5 3 2 8 8 N 1.31515 * 120.00048 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00242 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46779 * 60.00145 * 9 7 5 11 11 H 1.48501 * 109.47002 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46845 * 299.99944 * 9 7 5 13 13 O 1.45196 * 109.47307 * 295.00112 * 3 2 1 14 14 C 1.34778 * 117.00435 * 89.99869 * 13 3 2 15 15 O 1.21537 * 119.99962 * 0.02562 * 14 13 3 16 16 C 1.47134 * 120.00275 * 180.02562 * 14 13 3 17 17 C 1.38084 * 120.88709 * 359.97438 * 16 14 13 18 18 N 1.34313 * 120.36210 * 180.02562 * 17 16 14 19 19 C 1.46495 * 118.79798 * 180.02562 * 18 17 16 20 20 C 1.35602 * 122.39926 * 359.97438 * 18 17 16 21 21 C 1.34862 * 121.81206 * 359.97438 * 20 18 17 22 22 C 1.41671 * 119.34533 * 0.27902 * 21 20 18 23 23 O 1.22080 * 121.07048 * 179.74378 * 22 21 20 24 24 H 1.08998 * 109.47329 * 300.00360 * 1 2 3 25 25 H 1.09004 * 109.46701 * 60.00240 * 1 2 3 26 26 H 1.08994 * 109.47078 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47329 * 239.99639 * 2 1 3 28 28 H 1.09004 * 109.46701 * 119.99760 * 2 1 3 29 29 H 0.97002 * 120.00554 * 180.02562 * 8 7 5 30 30 H 1.07999 * 119.81420 * 0.05718 * 17 16 14 31 31 H 1.08998 * 109.47356 * 269.98291 * 19 18 17 32 32 H 1.08998 * 109.47173 * 29.98973 * 19 18 17 33 33 H 1.09006 * 109.46750 * 149.98125 * 19 18 17 34 34 H 1.07997 * 119.09235 * 180.02562 * 20 18 17 35 35 H 1.08002 * 120.32222 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1734 9 14 6.0050 0.8812 1.3819 10 1 6.4994 2.2815 1.3823 11 1 6.3977 0.2177 2.6510 12 1 6.5975 0.1473 0.2350 13 8 1.6559 2.0917 -1.2406 14 6 0.4679 2.7281 -1.2560 15 8 -0.2278 2.7404 -0.2596 16 6 0.0132 3.4078 -2.4792 17 6 0.7890 3.4057 -3.6214 18 7 0.3638 4.0301 -4.7320 19 6 1.2142 4.0058 -5.9247 20 6 -0.8243 4.6811 -4.7899 21 6 -1.6549 4.7403 -3.7291 22 6 -1.2784 4.1117 -2.5166 23 8 -2.0039 4.1495 -1.5355 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8292 -0.0604 2.9504 30 1 1.7427 2.8989 -3.6219 31 1 1.8847 4.8650 -5.9104 32 1 1.8008 3.0872 -5.9341 33 1 0.5896 4.0471 -6.8171 34 1 -1.1136 5.1649 -5.7111 35 1 -2.5956 5.2659 -3.8017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514948925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:51 Heat of formation + Delta-G solvation = -113.775071 kcal Electronic energy + Delta-G solvation = -20151.662185 eV Core-core repulsion = 16921.503232 eV Total energy + Delta-G solvation = -3230.158953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02270 -40.83729 -39.00061 -37.31710 -35.47104 -33.66481 -33.37472 -32.82809 -29.34073 -27.74759 -26.19476 -25.08791 -23.89406 -22.59212 -21.42174 -19.33996 -18.74901 -18.21939 -17.72506 -17.44262 -17.07890 -16.65846 -16.36310 -16.14604 -15.37046 -14.95471 -14.81414 -14.73188 -14.19794 -13.92359 -13.62220 -13.34372 -13.22724 -13.17737 -13.08940 -12.77142 -12.64814 -12.55246 -12.12860 -11.76670 -11.48299 -11.29740 -10.80227 -10.72282 -10.51564 -10.40695 -9.10859 -8.24050 -6.42347 -0.22670 0.38443 1.42815 1.47915 1.53209 1.56221 1.76599 2.07327 2.45610 2.75946 3.05299 3.42051 3.72752 3.77863 4.00373 4.30387 4.36189 4.37377 4.47548 4.59012 4.61196 4.68590 4.80780 4.85288 4.93416 5.04881 5.21715 5.27436 5.44816 5.53889 5.67761 5.71316 5.82472 6.00175 6.15659 6.64656 7.05373 7.13659 7.31364 8.83195 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.005490 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.209990 B = 5099.420855 C = 5824.310607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 C 0.226 3.774 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.012 3.988 8 N -0.919 5.919 9 Si 0.987 3.013 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.257 1.257 13 O -0.359 6.359 14 C 0.499 3.501 15 O -0.546 6.546 16 C -0.349 4.349 17 C 0.243 3.757 18 N -0.458 5.458 19 C 0.041 3.959 20 C 0.169 3.831 21 C -0.293 4.293 22 C 0.382 3.618 23 O -0.568 6.568 24 H 0.025 0.975 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.270 0.730 30 H 0.202 0.798 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.236 0.764 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 7.242 -24.897 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.163 4.163 3 C 0.172 3.828 4 H 0.010 0.990 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.187 4.187 8 N -0.557 5.557 9 Si 0.810 3.190 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.182 1.182 13 O -0.277 6.277 14 C 0.346 3.654 15 O -0.437 6.437 16 C -0.357 4.357 17 C 0.108 3.892 18 N -0.140 5.140 19 C -0.097 4.097 20 C 0.044 3.956 21 C -0.316 4.316 22 C 0.275 3.725 23 O -0.456 6.456 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.219 0.781 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.252 0.748 35 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.345 7.169 -24.137 25.215 hybrid contribution 0.368 -0.200 1.418 1.478 sum -0.977 6.969 -22.720 23.785 Atomic orbital electron populations 1.21698 0.97144 1.00234 0.99545 1.21842 0.93585 0.98250 1.02594 1.20334 0.94782 0.89049 0.78593 0.98957 1.21295 0.89886 1.39943 1.07173 0.90744 1.25922 1.04623 0.93873 0.94269 1.70051 1.37750 1.38017 1.09896 0.85179 0.77145 0.78741 0.77973 1.19416 1.20640 1.18160 1.86426 1.35212 1.63687 1.42346 1.21088 0.79713 0.76333 0.88304 1.90810 1.56258 1.59708 1.36964 1.21669 1.03151 1.16918 0.93975 1.22683 0.96954 0.86180 0.83418 1.43459 1.17639 1.40609 1.12289 1.23067 0.95942 1.06721 0.84011 1.22610 0.82338 0.89595 1.01009 1.22350 1.05244 1.10766 0.93233 1.19072 0.84445 0.79281 0.89662 1.90771 1.54885 1.59745 1.40240 0.95602 0.95182 0.91771 0.92732 0.89533 0.92129 0.78149 0.87936 0.87634 0.85051 0.74757 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.56 71.98 0.62 -5.89 16 2 C -0.12 -6.72 5.49 30.60 0.17 -6.55 16 3 C 0.23 13.14 2.25 29.85 0.07 13.21 16 4 H -0.01 -0.50 7.16 -2.39 -0.02 -0.52 16 5 C -0.55 -31.42 8.90 25.60 0.23 -31.20 16 6 H 0.07 4.04 7.81 -2.91 -0.02 4.02 16 7 C 0.01 0.70 5.29 84.65 0.45 1.15 16 8 N -0.92 -54.73 11.29 21.45 0.24 -54.49 16 9 Si 0.99 43.01 29.54 68.60 2.03 45.04 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 13 O -0.36 -18.27 9.08 -56.90 -0.52 -18.78 16 14 C 0.50 25.36 6.35 70.16 0.45 25.80 16 15 O -0.55 -33.28 12.76 26.21 0.33 -32.95 16 16 C -0.35 -13.23 6.05 -18.64 -0.11 -13.34 16 17 C 0.24 5.37 9.87 84.28 0.83 6.20 16 18 N -0.46 -4.72 2.97 -547.41 -1.63 -6.35 16 19 C 0.04 -0.07 10.53 127.77 1.34 1.28 16 20 C 0.17 1.61 10.17 83.33 0.85 2.46 16 21 C -0.29 -6.57 10.01 22.34 0.22 -6.35 16 22 C 0.38 15.00 6.97 25.46 0.18 15.18 16 23 O -0.57 -29.73 16.41 13.58 0.22 -29.50 16 24 H 0.02 1.40 7.79 -2.39 -0.02 1.38 16 25 H 0.03 1.50 6.06 -2.39 -0.01 1.48 16 26 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.05 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.09 5.04 5.95 -2.39 -0.01 5.02 16 29 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.20 3.68 7.54 -2.91 -0.02 3.66 16 31 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.11 -0.24 7.96 -2.39 -0.02 -0.26 16 33 H 0.13 -1.08 7.96 -2.38 -0.02 -1.10 16 34 H 0.24 -0.93 7.97 -2.91 -0.02 -0.95 16 35 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -98.71 300.81 7.07 -91.64 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.10 Total: 3.44 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: 5.29 Total: 1.95 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -1.38 Total: -60.84 kcal Atomic # 8 Polarization: -81.28 SS G_CDS: 0.04 Total: -81.24 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -98.71 7.07 -91.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514948925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.131 kcal (2) G-P(sol) polarization free energy of solvation -98.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds