Wall clock time and date at job start Mon Mar 30 2020 00:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47330 * 338.90751 * 3 2 1 5 5 C 1.37104 * 120.00152 * 84.50505 * 4 3 2 6 6 H 1.08001 * 120.00287 * 166.84571 * 5 4 3 7 7 C 1.38950 * 119.99528 * 346.84707 * 5 4 3 8 8 N 1.31411 * 120.00306 * 1.22708 * 7 5 4 9 9 Si 1.86806 * 119.99740 * 181.22493 * 7 5 4 10 10 H 1.48500 * 109.46791 * 59.99886 * 9 7 5 11 11 H 1.48490 * 109.46997 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47262 * 300.00502 * 9 7 5 13 13 C 1.34778 * 120.00099 * 264.50279 * 4 3 2 14 14 O 1.21296 * 120.00309 * 175.91398 * 13 4 3 15 15 C 1.50700 * 120.00149 * 355.92056 * 13 4 3 16 16 C 1.50698 * 115.54943 * 66.84348 * 15 13 4 17 17 O 1.20829 * 120.00120 * 243.69597 * 16 15 13 18 18 O 1.34228 * 119.99908 * 63.69920 * 16 15 13 19 19 C 1.52998 * 117.50227 * 212.51901 * 15 13 4 20 20 C 1.53000 * 117.49491 * 281.17984 * 15 13 4 21 21 C 1.53004 * 117.50230 * 359.97185 * 20 15 13 22 22 C 1.53003 * 117.49974 * 144.99363 * 20 15 13 23 23 H 4.40637 * 5.51421 * 179.97438 * 4 1 2 24 24 H 1.08998 * 109.46928 * 218.90759 * 3 2 1 25 25 H 1.09003 * 109.46909 * 98.91021 * 3 2 1 26 26 H 0.97004 * 119.99919 * 180.02562 * 8 7 5 27 27 H 0.96707 * 116.99697 * 174.95707 * 18 16 15 28 28 H 1.08997 * 117.50024 * 215.00351 * 19 15 13 29 29 H 1.09001 * 117.49464 * 359.97438 * 19 15 13 30 30 H 1.08997 * 109.46977 * 60.00431 * 21 20 15 31 31 H 1.09000 * 109.47228 * 180.02562 * 21 20 15 32 32 H 1.08997 * 109.46806 * 300.00202 * 21 20 15 33 33 H 1.09002 * 109.46975 * 60.00048 * 22 20 15 34 34 H 1.08999 * 109.47210 * 179.97438 * 22 20 15 35 35 H 1.08993 * 109.47562 * 299.99921 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2877 0.4970 5 6 3.2567 -2.3514 -0.3594 6 1 3.8087 -3.2287 -0.0559 7 6 2.6700 -2.3006 -1.6179 8 7 2.0189 -1.2238 -1.9965 9 14 2.8068 -3.7633 -2.7719 10 1 2.1896 -4.9548 -2.1360 11 1 2.1008 -3.4592 -4.0423 12 1 4.2385 -4.0388 -3.0542 13 6 3.4650 -1.4275 1.7963 14 8 3.7990 -2.5123 2.2239 15 6 3.4192 -0.2360 2.7178 16 6 2.0470 0.3274 2.9839 17 8 1.7756 1.4501 2.6290 18 8 1.1263 -0.4179 3.6151 19 6 4.4369 -0.1858 3.8591 20 6 4.5879 0.7496 2.6568 21 6 5.7140 0.4497 1.6654 22 6 4.2740 2.2317 2.8707 23 1 -1.0498 -0.0003 0.0003 24 1 3.0089 0.8005 0.6454 25 1 3.0092 0.1600 -1.0153 26 1 1.6090 -1.1885 -2.8749 27 1 0.2866 0.0109 3.8302 28 1 4.1140 0.2545 4.8024 29 1 5.1394 -1.0149 3.9436 30 1 5.3092 0.4201 0.6538 31 1 6.4729 1.2294 1.7308 32 1 6.1624 -0.5143 1.9057 33 1 3.8313 2.3707 3.8570 34 1 5.1943 2.8117 2.8010 35 1 3.5731 2.5687 2.1071 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588394451.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:09 Heat of formation + Delta-G solvation = -42.371663 kcal Electronic energy + Delta-G solvation = -21471.192350 eV Core-core repulsion = 18244.129681 eV Total energy + Delta-G solvation = -3227.062669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20019 -40.28135 -38.48594 -37.32165 -36.80625 -33.84184 -33.14253 -30.84501 -28.61266 -28.38336 -27.08581 -25.80256 -23.28179 -21.28696 -19.85007 -19.77333 -19.23376 -18.49116 -18.18952 -17.04984 -16.87131 -16.15877 -15.85081 -15.61218 -15.13388 -14.99541 -14.64038 -14.17351 -14.08333 -13.82039 -13.78233 -13.17063 -13.10602 -12.91149 -12.76101 -12.60439 -12.45065 -12.22634 -12.17435 -11.86800 -11.45498 -11.29651 -11.03190 -10.84583 -10.56791 -10.36630 -9.94478 -8.26229 -5.99432 1.02837 1.34487 1.39497 1.49407 1.69774 1.93479 2.04796 2.29602 2.40163 2.57206 3.01151 3.09038 3.58587 3.66711 3.76589 3.96909 4.05270 4.16399 4.44432 4.64968 4.68000 4.77657 4.88671 4.99344 5.01887 5.05321 5.12340 5.27429 5.38265 5.41246 5.42341 5.60027 5.95816 6.38549 6.96208 7.05934 7.12938 7.33564 7.86538 8.62280 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.021976 B = 0.008603 C = 0.007641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.803351 B = 3253.819883 C = 3663.384934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.128 4.128 3 C 0.232 3.768 4 N -0.437 5.437 5 C -0.342 4.342 6 H 0.083 0.917 7 C 0.000 4.000 8 N -0.880 5.880 9 Si 0.993 3.007 10 H -0.281 1.281 11 H -0.271 1.271 12 H -0.264 1.264 13 C 0.483 3.517 14 O -0.615 6.615 15 C -0.182 4.182 16 C 0.530 3.470 17 O -0.506 6.506 18 O -0.513 6.513 19 C -0.109 4.109 20 C -0.066 4.066 21 C -0.120 4.120 22 C -0.110 4.110 23 H 0.230 0.770 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.272 0.728 27 H 0.425 0.575 28 H 0.131 0.869 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 7.999 6.769 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.130 4.130 3 C 0.110 3.890 4 N -0.154 5.154 5 C -0.469 4.469 6 H 0.101 0.899 7 C -0.202 4.202 8 N -0.518 5.518 9 Si 0.816 3.184 10 H -0.206 1.206 11 H -0.196 1.196 12 H -0.189 1.189 13 C 0.271 3.729 14 O -0.502 6.502 15 C -0.186 4.186 16 C 0.372 3.628 17 O -0.394 6.394 18 O -0.327 6.327 19 C -0.146 4.146 20 C -0.067 4.067 21 C -0.177 4.177 22 C -0.167 4.167 23 H 0.246 0.754 24 H 0.098 0.902 25 H 0.129 0.871 26 H 0.083 0.917 27 H 0.287 0.713 28 H 0.149 0.851 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.488 7.653 6.535 10.366 hybrid contribution -1.217 -0.855 -0.688 1.639 sum 1.271 6.798 5.846 9.056 Atomic orbital electron populations 1.25021 0.96328 1.02148 1.05629 1.23394 0.94953 0.98403 0.96216 1.18603 0.84684 0.84219 1.01542 1.43801 1.54617 1.10596 1.06354 1.19718 1.34063 0.97285 0.95861 0.89907 1.26050 0.94592 1.00676 0.98833 1.70089 1.33425 1.27356 1.20935 0.84999 0.78906 0.77472 0.76988 1.20635 1.19575 1.18901 1.19000 0.84037 0.87978 0.81843 1.90485 1.55352 1.28677 1.75718 1.21037 0.88997 1.01734 1.06875 1.21713 0.85246 0.82571 0.73262 1.90651 1.79668 1.20236 1.48848 1.84554 1.29261 1.47865 1.70972 1.23505 0.97007 1.01426 0.92647 1.22022 0.92274 0.93634 0.98737 1.21474 0.96490 1.02534 0.97187 1.21501 1.02786 0.89921 1.02451 0.75372 0.90160 0.87068 0.91698 0.71320 0.85094 0.87440 0.93274 0.87744 0.93205 0.91892 0.88979 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.95 19.25 74.32 1.43 -10.51 16 2 C -0.13 -6.16 9.71 31.12 0.30 -5.86 16 3 C 0.23 11.09 4.27 84.57 0.36 11.45 16 4 N -0.44 -22.88 2.60 -645.42 -1.68 -24.56 16 5 C -0.34 -19.28 9.45 84.04 0.79 -18.49 16 6 H 0.08 4.93 7.27 -2.91 -0.02 4.91 16 7 C 0.00 0.01 5.37 84.93 0.46 0.47 16 8 N -0.88 -45.72 8.07 21.66 0.17 -45.55 16 9 Si 0.99 42.50 29.55 68.60 2.03 44.52 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 13 C 0.48 24.26 5.91 87.66 0.52 24.77 16 14 O -0.62 -35.19 16.37 -3.08 -0.05 -35.24 16 15 C -0.18 -7.07 1.29 -53.68 -0.07 -7.14 16 16 C 0.53 19.74 5.57 71.24 0.40 20.14 16 17 O -0.51 -18.72 13.44 21.96 0.30 -18.43 16 18 O -0.51 -17.47 13.42 -51.40 -0.69 -18.16 16 19 C -0.11 -3.32 9.05 30.62 0.28 -3.04 16 20 C -0.07 -2.02 1.87 -52.15 -0.10 -2.11 16 21 C -0.12 -3.61 8.87 71.98 0.64 -2.98 16 22 C -0.11 -2.74 8.22 71.98 0.59 -2.15 16 23 H 0.23 7.93 7.80 -4.43 -0.03 7.89 16 24 H 0.08 3.51 4.59 -2.39 -0.01 3.50 16 25 H 0.11 5.65 6.15 -2.39 -0.01 5.64 16 26 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 27 H 0.43 9.58 9.11 -74.05 -0.67 8.91 16 28 H 0.13 3.14 8.05 -2.39 -0.02 3.12 16 29 H 0.11 3.44 7.93 -2.39 -0.02 3.42 16 30 H 0.05 1.71 7.41 -2.39 -0.02 1.69 16 31 H 0.10 2.29 7.92 -2.39 -0.02 2.27 16 32 H 0.05 1.63 7.90 -2.39 -0.02 1.61 16 33 H 0.06 1.46 7.83 -2.39 -0.02 1.44 16 34 H 0.09 1.73 7.92 -2.39 -0.02 1.71 16 35 H 0.06 1.86 6.65 -2.39 -0.02 1.84 16 Total: -1.00 -70.40 298.44 6.13 -64.28 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.45 Total: 28.59 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.60 Total: 4.54 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -1.50 Total: -70.11 kcal Atomic # 8 Polarization: -71.38 SS G_CDS: -0.45 Total: -71.82 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.40 6.13 -64.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588394451.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.905 kcal (2) G-P(sol) polarization free energy of solvation -70.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds