Wall clock time and date at job start Mon Mar 30 2020 00:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00190 * 2 1 4 4 N 1.46900 * 109.47004 * 124.99796 * 3 2 1 5 5 C 1.46894 * 111.00238 * 288.21770 * 4 3 2 6 6 C 1.50695 * 109.47357 * 160.71195 * 5 4 3 7 7 H 1.08004 * 119.99860 * 1.58134 * 6 5 4 8 8 C 1.37878 * 120.00328 * 181.57736 * 6 5 4 9 9 N 1.31519 * 120.00003 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00322 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47366 * 89.99934 * 10 8 6 12 12 H 1.48498 * 109.47127 * 210.00337 * 10 8 6 13 13 H 1.48504 * 109.46875 * 330.00127 * 10 8 6 14 14 C 1.46904 * 110.99955 * 164.26050 * 4 3 2 15 15 C 1.50701 * 109.47282 * 293.95839 * 14 4 3 16 16 C 1.34154 * 125.42800 * 89.99864 * 15 14 4 17 17 C 1.47059 * 105.94701 * 180.02562 * 16 15 14 18 18 C 1.47236 * 127.20125 * 179.97438 * 17 16 15 19 19 O 1.21538 * 119.99706 * 359.97438 * 18 17 16 20 20 O 1.34774 * 120.00086 * 179.97438 * 18 17 16 21 21 C 1.36496 * 105.59785 * 359.97438 * 17 16 15 22 22 O 1.33621 * 108.38644 * 0.02562 * 21 17 16 23 23 H 1.08002 * 119.99510 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.00622 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99510 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.46797 * 5.00032 * 3 2 1 27 27 H 1.09005 * 109.46563 * 244.99787 * 3 2 1 28 28 H 1.08996 * 109.47113 * 280.71407 * 5 4 3 29 29 H 1.09001 * 109.47214 * 40.70803 * 5 4 3 30 30 H 0.96995 * 120.00025 * 179.97438 * 9 8 6 31 31 H 1.08992 * 109.46986 * 173.95598 * 14 4 3 32 32 H 1.09003 * 109.46811 * 53.95182 * 14 4 3 33 33 H 1.07998 * 127.03003 * 359.75577 * 16 15 14 34 34 H 0.96696 * 116.99870 * 179.97438 * 20 18 17 35 35 H 1.08004 * 125.80905 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2754 1.4841 2.4053 6 6 3.1613 1.0423 3.5415 7 1 4.1689 0.7085 3.3423 8 6 2.6856 1.0644 4.8355 9 7 1.4584 1.4706 5.0781 10 14 3.7840 0.5175 6.2439 11 1 4.5388 1.6852 6.7652 12 1 2.9485 -0.0564 7.3292 13 1 4.7379 -0.5112 5.7570 14 6 3.9983 2.3931 0.9673 15 6 4.8784 2.0716 -0.2130 16 6 4.6484 2.4479 -1.4799 17 6 5.7647 1.9083 -2.2707 18 6 5.9767 2.0464 -3.7211 19 8 5.1759 2.6628 -4.3963 20 8 7.0587 1.4892 -4.3001 21 6 6.5632 1.2527 -1.3787 22 8 6.0172 1.3628 -0.1641 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5401 -0.9352 0.0004 25 1 1.8499 -0.9354 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 2.0005 2.5296 2.5442 29 1 1.3743 0.8709 2.3876 30 1 1.1237 1.4858 5.9883 31 1 4.6086 2.4616 1.8677 32 1 3.4946 3.3446 0.7964 33 1 3.8119 3.0251 -1.8453 34 1 7.1548 1.6064 -5.2551 35 1 7.4799 0.7326 -1.6145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826447.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:38 Heat of formation + Delta-G solvation = -49.075583 kcal Electronic energy + Delta-G solvation = -19532.489132 eV Core-core repulsion = 16305.135759 eV Total energy + Delta-G solvation = -3227.353373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.54090 -39.92565 -37.28642 -36.15922 -33.26522 -32.98328 -32.46350 -30.41264 -27.29110 -26.27128 -24.62899 -23.69884 -21.24801 -20.94495 -20.18844 -19.18630 -17.84711 -17.43091 -16.56775 -16.19695 -15.88561 -15.45036 -15.13423 -14.55759 -14.39376 -13.90848 -13.84814 -13.26554 -12.87209 -12.66249 -12.64895 -12.13209 -11.75352 -11.52011 -11.20754 -11.06922 -10.81420 -10.70334 -10.64920 -10.52113 -10.01217 -9.83890 -9.32014 -8.88449 -8.53097 -8.45208 -7.44498 -6.05096 -4.06955 1.13490 2.05364 2.76668 2.79087 3.02579 3.06123 3.30537 3.37284 3.41812 4.40848 4.59984 4.69212 4.94235 5.20670 5.30773 5.49684 5.55035 5.62285 5.65864 5.83961 5.92204 5.97243 6.12996 6.15152 6.29690 6.37841 6.43895 7.03224 7.09625 7.16311 7.20362 7.29439 7.76572 7.78779 7.98703 8.08058 8.44366 9.00594 9.57561 11.05312 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.004826 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.870811 B = 5800.379318 C = 6701.419266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C 0.069 3.931 4 N -0.528 5.528 5 C 0.193 3.807 6 C -0.509 4.509 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.130 3.870 15 C 0.032 3.968 16 C -0.173 4.173 17 C -0.237 4.237 18 C 0.558 3.442 19 O -0.517 6.517 20 O -0.517 6.517 21 C 0.052 3.948 22 O -0.156 6.156 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.108 0.892 26 H 0.032 0.968 27 H 0.074 0.926 28 H -0.006 1.006 29 H 0.041 0.959 30 H 0.261 0.739 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.158 0.842 34 H 0.413 0.587 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 0.244 -14.397 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.140 4.140 3 C -0.059 4.059 4 N -0.253 5.253 5 C 0.069 3.931 6 C -0.548 4.548 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.197 1.197 14 C 0.002 3.998 15 C -0.018 4.018 16 C -0.193 4.193 17 C -0.240 4.240 18 C 0.403 3.597 19 O -0.406 6.406 20 O -0.330 6.330 21 C -0.020 4.020 22 O -0.049 6.049 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.012 0.988 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.079 0.921 33 H 0.176 0.824 34 H 0.272 0.728 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.071 -0.169 -13.685 15.889 hybrid contribution 0.073 0.526 -0.068 0.536 sum 8.144 0.358 -13.753 15.987 Atomic orbital electron populations 1.23691 0.95945 1.01238 1.03320 1.22788 0.95332 0.98577 0.97269 1.21356 0.94582 0.94644 0.95307 1.62104 1.15142 1.44409 1.03668 1.19811 0.94175 0.95705 0.83383 1.21160 0.99847 1.43295 0.90451 0.91762 1.24974 0.95133 0.95477 0.98884 1.69955 1.15545 1.47623 1.20592 0.86513 0.80384 0.78896 0.81737 1.20722 1.21290 1.19747 1.20578 0.92372 0.93322 0.93478 1.22703 0.86671 0.95315 0.97070 1.22379 0.99824 1.06032 0.91064 1.20372 1.01203 1.11752 0.90658 1.19782 0.77787 0.74750 0.87400 1.90895 1.44991 1.39990 1.64766 1.84557 1.45404 1.72786 1.30207 1.24636 0.98210 0.97805 0.81324 1.83866 1.32911 1.57061 1.31080 0.89096 0.88879 0.87356 0.95006 0.90818 0.98802 0.94097 0.92891 0.87565 0.92103 0.82435 0.72822 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.29 14.32 29.01 0.42 -2.88 16 2 C -0.12 -2.13 8.74 -36.03 -0.31 -2.44 16 3 C 0.07 1.23 5.27 -4.98 -0.03 1.20 16 4 N -0.53 -10.86 4.37 -238.97 -1.04 -11.90 16 5 C 0.19 4.82 4.59 -4.98 -0.02 4.79 16 6 C -0.51 -13.82 8.57 -34.44 -0.30 -14.11 16 7 H 0.06 1.74 7.72 -52.48 -0.41 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 10 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.13 2.33 5.31 -4.97 -0.03 2.31 16 15 C 0.03 0.51 6.25 -35.75 -0.22 0.29 16 16 C -0.17 -2.56 9.19 -37.45 -0.34 -2.90 16 17 C -0.24 -3.20 6.31 -103.29 -0.65 -3.85 16 18 C 0.56 7.11 8.33 34.39 0.29 7.40 16 19 O -0.52 -8.12 17.77 -19.30 -0.34 -8.46 16 20 O -0.52 -4.51 13.28 -40.69 -0.54 -5.05 16 21 C 0.05 0.62 11.94 30.10 0.36 0.98 16 22 O -0.16 -2.36 10.52 7.71 0.08 -2.28 16 23 H 0.09 1.42 7.84 -52.49 -0.41 1.01 16 24 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 26 H 0.03 0.57 7.71 -51.93 -0.40 0.17 16 27 H 0.07 1.21 5.49 -51.93 -0.29 0.93 16 28 H -0.01 -0.15 8.00 -51.93 -0.42 -0.57 16 29 H 0.04 1.11 7.12 -51.93 -0.37 0.74 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.11 2.03 7.35 -51.93 -0.38 1.65 16 32 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 33 H 0.16 2.22 7.94 -52.49 -0.42 1.80 16 34 H 0.41 1.69 9.11 45.56 0.42 2.11 16 35 H 0.22 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -32.30 313.24 -5.85 -38.14 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.50 Total: 1.72 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.94 Total: -7.75 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.31 Total: -37.25 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.80 Total: -15.80 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.30 -5.85 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826447.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.934 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds