Wall clock time and date at job start Mon Mar 30 2020 00:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00178 * 2 1 4 4 N 1.46899 * 109.46938 * 124.15563 * 3 2 1 5 5 C 1.46897 * 111.00048 * 300.81338 * 4 3 2 6 6 C 1.50705 * 109.46931 * 288.22115 * 5 4 3 7 7 H 1.08003 * 119.99980 * 354.76432 * 6 5 4 8 8 C 1.37880 * 119.99904 * 174.76405 * 6 5 4 9 9 N 1.31509 * 119.99950 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99667 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47466 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46696 * 120.00278 * 10 8 6 13 13 H 1.48499 * 109.47049 * 240.00014 * 10 8 6 14 14 C 1.46899 * 110.99849 * 64.76541 * 4 3 2 15 15 C 1.50703 * 109.47237 * 66.04578 * 14 4 3 16 16 C 1.40311 * 126.64844 * 260.27502 * 15 14 4 17 17 C 1.35167 * 107.12792 * 180.14575 * 16 15 14 18 18 O 1.33913 * 108.78055 * 359.61803 * 17 16 15 19 19 C 1.34946 * 109.37976 * 0.24217 * 18 17 16 20 20 C 1.46467 * 125.99133 * 179.97438 * 19 18 17 21 21 O 1.21629 * 119.99649 * 180.02562 * 20 19 18 22 22 O 1.34894 * 120.00608 * 0.02579 * 20 19 18 23 23 H 1.08001 * 120.00154 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.99940 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99800 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.46689 * 4.15821 * 3 2 1 27 27 H 1.09002 * 109.47307 * 244.15953 * 3 2 1 28 28 H 1.08996 * 109.47584 * 48.22005 * 5 4 3 29 29 H 1.09000 * 109.47270 * 168.22988 * 5 4 3 30 30 H 0.97001 * 120.00049 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47132 * 306.04380 * 14 4 3 32 32 H 1.09002 * 109.47146 * 186.04403 * 14 4 3 33 33 H 1.07997 * 126.43633 * 0.02562 * 16 15 14 34 34 H 1.07991 * 125.60896 * 179.88599 * 17 16 15 35 35 H 0.96700 * 117.00104 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9817 1.3403 1.1461 5 6 2.2494 1.2009 2.4119 6 6 1.4797 2.4666 2.6888 7 1 1.5953 3.3220 2.0396 8 6 0.6278 2.5327 3.7710 9 7 0.4875 1.4913 4.5618 10 14 -0.3268 4.1013 4.1138 11 1 0.0054 5.1181 3.0838 12 1 -1.7831 3.8134 4.0728 13 1 0.0379 4.6192 5.4569 14 6 4.0189 0.3075 1.0216 15 6 4.9038 0.6237 -0.1566 16 6 4.8307 0.0524 -1.4361 17 6 5.8074 0.6170 -2.1805 18 8 6.4651 1.5065 -1.4258 19 6 5.9294 1.5260 -0.1874 20 6 6.3705 2.3664 0.9281 21 8 5.8067 2.2948 2.0034 22 8 7.4020 3.2199 0.7630 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3575 2.1322 0.0745 27 1 2.6331 1.3958 -0.9249 28 1 1.5565 0.3626 2.3404 29 1 2.9556 1.0206 3.2223 30 1 -0.1115 1.5379 5.3233 31 1 3.5480 -0.6641 0.8719 32 1 4.6194 0.2841 1.9310 33 1 4.1275 -0.6988 -1.7639 34 1 6.0195 0.3914 -3.2151 35 1 7.6566 3.7540 1.5278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:44 Heat of formation + Delta-G solvation = -40.196445 kcal Electronic energy + Delta-G solvation = -20304.896254 eV Core-core repulsion = 17077.927909 eV Total energy + Delta-G solvation = -3226.968344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.65511 -39.58681 -37.47543 -35.87214 -33.53908 -32.74078 -31.71359 -30.16312 -27.47008 -26.33443 -24.36519 -23.26478 -21.59857 -20.93989 -19.93099 -18.80760 -18.07154 -17.14710 -16.42316 -16.17505 -15.69897 -15.09503 -14.89827 -14.62911 -14.23045 -13.77864 -13.49041 -13.10364 -13.03216 -12.80337 -12.12432 -11.91532 -11.41188 -11.29913 -11.11387 -10.91829 -10.66579 -10.57965 -10.44887 -10.34714 -9.91694 -9.66262 -9.17781 -8.68065 -8.60112 -8.32618 -7.15156 -5.92850 -3.92374 1.03011 2.35767 2.60179 2.92099 3.14183 3.35747 3.42993 3.44317 3.48371 4.50444 4.76631 4.83979 5.22392 5.36298 5.42816 5.55229 5.59845 5.62087 5.80159 5.92740 6.10543 6.21858 6.25653 6.40136 6.45770 6.62480 6.71561 6.95725 7.19016 7.35061 7.39620 7.50298 7.90873 8.08239 8.19956 8.28217 8.63790 9.14969 9.70373 11.17964 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.006504 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.680910 B = 4304.142012 C = 5275.232052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 C 0.088 3.912 4 N -0.515 5.515 5 C 0.194 3.806 6 C -0.495 4.495 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.107 3.893 15 C -0.052 4.052 16 C -0.221 4.221 17 C -0.004 4.004 18 O -0.157 6.157 19 C -0.057 4.057 20 C 0.559 3.441 21 O -0.455 6.455 22 O -0.517 6.517 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.005 0.995 29 H 0.026 0.974 30 H 0.259 0.741 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.210 0.790 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.283 -2.876 -12.913 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.199 4.199 3 C -0.040 4.040 4 N -0.237 5.237 5 C 0.069 3.931 6 C -0.534 4.534 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.021 4.021 15 C -0.054 4.054 16 C -0.240 4.240 17 C -0.074 4.074 18 O -0.053 6.053 19 C -0.107 4.107 20 C 0.401 3.599 21 O -0.340 6.340 22 O -0.330 6.330 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.174 0.826 34 H 0.226 0.774 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 10.404 -2.520 -12.815 16.698 hybrid contribution -1.013 0.120 0.717 1.247 sum 9.391 -2.400 -12.098 15.502 Atomic orbital electron populations 1.23687 0.96040 1.01087 1.00794 1.23523 0.96674 0.99729 1.00024 1.21288 0.94677 0.94353 0.93712 1.62413 1.12984 1.44157 1.04180 1.19761 0.92132 0.97014 0.84181 1.21144 1.22942 0.98696 1.10610 0.92107 1.24945 0.97084 0.96310 0.96249 1.69968 1.38238 1.29381 1.16400 0.86512 0.79498 0.83682 0.78150 1.19768 1.21235 1.21116 1.20650 0.93300 0.94111 0.94053 1.20760 0.94224 0.93871 0.96558 1.21774 1.02773 1.05926 0.93521 1.24341 0.94068 0.91648 0.97366 1.84115 1.50707 1.50276 1.20174 1.20438 1.01104 1.05037 0.84140 1.18811 0.77585 0.77849 0.85625 1.91143 1.53406 1.64567 1.24901 1.84619 1.49248 1.52312 1.46807 0.89743 0.88509 0.88731 0.89923 0.92222 0.97673 0.95612 0.93183 0.94263 0.89200 0.82637 0.77382 0.72668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 14.32 29.02 0.42 -2.76 16 2 C -0.18 -3.26 7.40 -36.02 -0.27 -3.53 16 3 C 0.09 1.72 5.49 -4.98 -0.03 1.70 16 4 N -0.51 -11.37 4.65 -238.96 -1.11 -12.48 16 5 C 0.19 5.15 4.58 -4.97 -0.02 5.13 16 6 C -0.50 -14.26 8.53 -34.44 -0.29 -14.55 16 7 H 0.06 1.76 7.66 -52.48 -0.40 1.36 16 8 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.11 2.02 4.45 -4.98 -0.02 2.00 16 15 C -0.05 -0.83 4.77 -104.42 -0.50 -1.33 16 16 C -0.22 -2.74 10.06 -39.90 -0.40 -3.14 16 17 C 0.00 -0.05 12.08 29.64 0.36 0.31 16 18 O -0.16 -2.18 10.67 4.71 0.05 -2.13 16 19 C -0.06 -0.92 7.18 -36.85 -0.26 -1.18 16 20 C 0.56 9.31 8.30 34.04 0.28 9.59 16 21 O -0.45 -9.13 15.78 -19.36 -0.31 -9.44 16 22 O -0.52 -6.67 13.44 -42.47 -0.57 -7.24 16 23 H 0.08 1.34 8.06 -52.49 -0.42 0.92 16 24 H 0.10 1.77 7.84 -52.48 -0.41 1.36 16 25 H 0.09 1.59 6.82 -52.48 -0.36 1.23 16 26 H 0.08 1.78 7.05 -51.93 -0.37 1.41 16 27 H 0.06 1.05 6.54 -51.93 -0.34 0.71 16 28 H 0.01 0.15 6.69 -51.93 -0.35 -0.19 16 29 H 0.03 0.75 7.81 -51.93 -0.41 0.34 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.04 0.70 6.37 -51.93 -0.33 0.37 16 32 H 0.09 1.83 6.74 -51.93 -0.35 1.48 16 33 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.41 3.34 9.11 45.56 0.42 3.75 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -34.31 306.41 -5.74 -40.05 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.30 Total: 2.22 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -0.84 Total: -6.28 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.37 Total: -39.02 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.83 Total: -18.80 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.31 -5.74 -40.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.148 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds