Wall clock time and date at job start Mon Mar 30 2020 00:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40313 * 126.64784 * 2 1 4 4 C 1.35177 * 107.12760 * 180.28258 * 3 2 1 5 5 C 1.50699 * 125.61072 * 179.76741 * 4 3 2 6 6 N 1.46903 * 109.46962 * 89.99939 * 5 4 3 7 7 C 1.47477 * 111.00040 * 265.96936 * 6 5 4 8 8 C 1.53507 * 87.93331 * 221.29797 * 7 6 5 9 9 C 1.50701 * 114.34227 * 139.68454 * 8 7 6 10 10 H 1.08002 * 119.99826 * 266.07406 * 9 8 7 11 11 C 1.37873 * 119.99769 * 86.07743 * 9 8 7 12 12 N 1.31513 * 120.00473 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99818 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46961 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46916 * 119.99961 * 13 11 9 16 16 H 1.48506 * 109.47070 * 240.00159 * 13 11 9 17 17 C 1.47478 * 110.99861 * 169.99812 * 6 5 4 18 18 O 1.33910 * 108.77686 * 359.74687 * 4 3 2 19 19 C 1.34934 * 109.38797 * 359.97438 * 18 4 3 20 20 C 1.46472 * 126.00048 * 179.97438 * 19 18 4 21 21 O 1.21624 * 119.99739 * 180.02562 * 20 19 18 22 22 O 1.34890 * 120.00039 * 0.02783 * 20 19 18 23 23 H 1.08999 * 109.47528 * 270.17074 * 1 2 3 24 24 H 1.09000 * 109.47676 * 30.17693 * 1 2 3 25 25 H 1.09004 * 109.47098 * 150.17347 * 1 2 3 26 26 H 1.07998 * 126.44123 * 0.02562 * 3 2 1 27 27 H 1.08994 * 109.47063 * 210.00033 * 5 4 3 28 28 H 1.09004 * 109.46675 * 329.99970 * 5 4 3 29 29 H 1.08999 * 113.47517 * 336.06969 * 7 6 5 30 30 H 1.09007 * 113.47342 * 106.53035 * 7 6 5 31 31 H 1.09005 * 114.17227 * 272.37994 * 8 7 6 32 32 H 0.97000 * 120.00325 * 180.02562 * 12 11 9 33 33 H 1.09001 * 113.47675 * 253.47271 * 17 6 5 34 34 H 1.09004 * 113.47287 * 23.87591 * 17 6 5 35 35 H 0.96700 * 117.00163 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3444 1.1258 0.0000 4 6 3.6185 0.6741 -0.0064 5 6 4.8549 1.5356 -0.0137 6 7 5.2640 1.8168 1.3689 7 6 4.7007 3.0969 1.8368 8 6 6.0547 3.3868 2.4994 9 6 6.5155 4.8159 2.3715 10 1 7.1694 5.1019 1.5609 11 6 6.1024 5.7582 3.2893 12 7 5.3066 5.4098 4.2767 13 14 6.6743 7.5295 3.1311 14 1 7.5581 7.6603 1.9450 15 1 5.4951 8.4178 2.9708 16 1 7.4247 7.9183 4.3522 17 6 6.5943 2.4522 1.4076 18 8 3.6012 -0.6649 -0.0046 19 6 2.3227 -1.0963 0.0034 20 6 1.8857 -2.4943 0.0071 21 8 0.6990 -2.7605 0.0140 22 8 2.7995 -3.4865 0.0030 23 1 -0.3634 0.0031 1.0276 24 1 -0.3634 0.8884 -0.5166 25 1 -0.3633 -0.8916 -0.5112 26 1 2.0303 2.1590 0.0004 27 1 5.6590 1.0127 -0.5313 28 1 4.6414 2.4731 -0.5273 29 1 4.4567 3.7855 1.0278 30 1 3.8849 2.9775 2.5500 31 1 6.1499 2.9928 3.5113 32 1 5.0157 6.0729 4.9221 33 1 7.3835 1.7865 1.7570 34 1 6.8562 2.9679 0.4837 35 1 2.4632 -4.3932 0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600192161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:41 Heat of formation + Delta-G solvation = -42.926847 kcal Electronic energy + Delta-G solvation = -19457.657019 eV Core-core repulsion = 16230.570276 eV Total energy + Delta-G solvation = -3227.086743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.72753 -40.02120 -39.01713 -36.39023 -34.10265 -33.09891 -31.84252 -28.90437 -27.93876 -26.09368 -24.90350 -23.58927 -22.24156 -21.26690 -19.63861 -18.75263 -18.44157 -17.51881 -16.83030 -16.54210 -15.41990 -15.30289 -14.84394 -14.51764 -14.08438 -13.89174 -13.59075 -13.19763 -13.17211 -12.93868 -12.65248 -12.24972 -12.00870 -11.78862 -11.68241 -11.22115 -11.05424 -10.85147 -10.65607 -10.41201 -9.94962 -9.67775 -9.39140 -9.05873 -8.56709 -8.46232 -8.19135 -6.12090 -4.17583 0.79888 2.25669 2.41679 2.80688 3.18954 3.23717 3.32608 3.35419 4.34234 4.53948 4.69903 4.93532 5.02191 5.16854 5.28662 5.40018 5.47849 5.60470 5.62094 5.73338 5.92760 5.99723 6.04590 6.18550 6.20910 6.30305 6.42216 6.55035 6.56821 6.90199 7.04031 7.05190 7.64406 7.68819 7.78138 7.91411 8.27917 8.86329 9.48348 10.97399 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.037197 B = 0.003803 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.567777 B = 7360.449956 C = 7718.585333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.059 4.059 3 C -0.226 4.226 4 C 0.079 3.921 5 C 0.085 3.915 6 N -0.481 5.481 7 C 0.003 3.997 8 C 0.042 3.958 9 C -0.518 4.518 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.884 5.884 13 Si 0.891 3.109 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.003 4.003 18 O -0.145 6.145 19 C -0.096 4.096 20 C 0.576 3.424 21 O -0.502 6.502 22 O -0.505 6.505 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.159 0.841 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.262 0.738 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 -11.298 -9.702 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.061 4.061 3 C -0.246 4.246 4 C 0.025 3.975 5 C -0.043 4.043 6 N -0.205 5.205 7 C -0.125 4.125 8 C 0.023 3.977 9 C -0.556 4.556 10 H 0.078 0.922 11 C -0.136 4.136 12 N -0.522 5.522 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.131 4.131 18 O -0.040 6.040 19 C -0.146 4.146 20 C 0.421 3.579 21 O -0.393 6.393 22 O -0.317 6.317 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.177 0.823 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -6.304 -11.759 -9.213 16.214 hybrid contribution -0.003 1.160 -0.536 1.278 sum -6.307 -10.599 -9.749 15.721 Atomic orbital electron populations 1.20483 0.88116 1.03582 1.03225 1.20614 0.97401 0.90720 0.97406 1.21507 0.91343 1.00210 1.11526 1.22971 0.97449 0.80001 0.97044 1.21353 0.91613 0.96092 0.95271 1.68949 1.06811 1.30258 1.14437 1.24222 1.02071 0.87005 0.99251 1.20100 0.89773 0.93824 0.93994 1.21046 1.30191 0.92625 1.11782 0.92229 1.25023 0.94709 0.98996 0.94829 1.69974 1.33602 1.34238 1.14337 0.86553 0.78604 0.84801 0.78151 1.19681 1.20958 1.20869 1.24070 0.91226 0.96794 1.01037 1.84097 1.27381 1.22222 1.70273 1.20212 0.82502 0.91193 1.20697 1.18834 0.83121 0.83549 0.72363 1.90946 1.17237 1.83310 1.47779 1.84702 1.41752 1.19538 1.85674 0.90344 0.90945 0.89824 0.82321 0.89464 0.90032 0.92416 0.91489 0.91607 0.92815 0.91492 0.92304 0.72618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.81 36.00 0.35 -0.78 16 2 C -0.06 -0.85 6.20 -104.42 -0.65 -1.50 16 3 C -0.23 -3.34 10.72 -39.89 -0.43 -3.77 16 4 C 0.08 1.26 6.90 -35.40 -0.24 1.02 16 5 C 0.08 1.34 5.34 -4.97 -0.03 1.31 16 6 N -0.48 -9.30 6.32 -246.11 -1.55 -10.85 16 7 C 0.00 0.07 7.28 -7.55 -0.06 0.01 16 8 C 0.04 1.01 3.76 -91.24 -0.34 0.67 16 9 C -0.52 -13.50 8.83 -34.44 -0.30 -13.80 16 10 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 11 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 12 N -0.88 -24.84 13.26 55.43 0.74 -24.10 16 13 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.00 -0.06 7.25 -7.55 -0.05 -0.12 16 18 O -0.14 -2.40 10.67 4.76 0.05 -2.34 16 19 C -0.10 -1.47 7.18 -36.84 -0.26 -1.74 16 20 C 0.58 7.78 8.30 34.05 0.28 8.06 16 21 O -0.50 -7.19 15.53 -19.36 -0.30 -7.49 16 22 O -0.51 -5.44 13.44 -42.45 -0.57 -6.01 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.99 6.45 -51.93 -0.34 0.65 16 26 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 27 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 28 H 0.08 1.18 7.30 -51.93 -0.38 0.80 16 29 H 0.06 1.21 7.38 -51.93 -0.38 0.82 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 31 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.09 7.87 -51.93 -0.41 0.68 16 35 H 0.42 2.09 9.11 45.56 0.42 2.50 16 LS Contribution 308.17 15.07 4.64 4.64 Total: -1.00 -30.37 308.17 -7.44 -37.81 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -3.59 Total: 1.92 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.83 Total: -8.93 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.82 Total: -34.95 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.82 Total: -15.85 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.37 -7.44 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600192161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.118 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds