Wall clock time and date at job start Mon Mar 30 2020 00:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40313 * 126.64784 * 2 1 4 4 C 1.35177 * 107.12760 * 180.28258 * 3 2 1 5 5 C 1.50699 * 125.61072 * 179.76741 * 4 3 2 6 6 N 1.46903 * 109.46962 * 89.99939 * 5 4 3 7 7 C 1.47477 * 111.00040 * 265.96936 * 6 5 4 8 8 C 1.53507 * 87.93331 * 221.29797 * 7 6 5 9 9 C 1.50701 * 114.34227 * 139.68454 * 8 7 6 10 10 H 1.08002 * 119.99826 * 266.07406 * 9 8 7 11 11 C 1.37873 * 119.99769 * 86.07743 * 9 8 7 12 12 N 1.31513 * 120.00473 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99818 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46961 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46916 * 119.99961 * 13 11 9 16 16 H 1.48506 * 109.47070 * 240.00159 * 13 11 9 17 17 C 1.47478 * 110.99861 * 169.99812 * 6 5 4 18 18 O 1.33910 * 108.77686 * 359.74687 * 4 3 2 19 19 C 1.34934 * 109.38797 * 359.97438 * 18 4 3 20 20 C 1.46472 * 126.00048 * 179.97438 * 19 18 4 21 21 O 1.21624 * 119.99739 * 180.02562 * 20 19 18 22 22 O 1.34890 * 120.00039 * 0.02783 * 20 19 18 23 23 H 1.08999 * 109.47528 * 270.17074 * 1 2 3 24 24 H 1.09000 * 109.47676 * 30.17693 * 1 2 3 25 25 H 1.09004 * 109.47098 * 150.17347 * 1 2 3 26 26 H 1.07998 * 126.44123 * 0.02562 * 3 2 1 27 27 H 1.08994 * 109.47063 * 210.00033 * 5 4 3 28 28 H 1.09004 * 109.46675 * 329.99970 * 5 4 3 29 29 H 1.08999 * 113.47517 * 336.06969 * 7 6 5 30 30 H 1.09007 * 113.47342 * 106.53035 * 7 6 5 31 31 H 1.09005 * 114.17227 * 272.37994 * 8 7 6 32 32 H 0.97000 * 120.00325 * 180.02562 * 12 11 9 33 33 H 1.09001 * 113.47675 * 253.47271 * 17 6 5 34 34 H 1.09004 * 113.47287 * 23.87591 * 17 6 5 35 35 H 0.96700 * 117.00163 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3444 1.1258 0.0000 4 6 3.6185 0.6741 -0.0064 5 6 4.8549 1.5356 -0.0137 6 7 5.2640 1.8168 1.3689 7 6 4.7007 3.0969 1.8368 8 6 6.0547 3.3868 2.4994 9 6 6.5155 4.8159 2.3715 10 1 7.1694 5.1019 1.5609 11 6 6.1024 5.7582 3.2893 12 7 5.3066 5.4098 4.2767 13 14 6.6743 7.5295 3.1311 14 1 7.5581 7.6603 1.9450 15 1 5.4951 8.4178 2.9708 16 1 7.4247 7.9183 4.3522 17 6 6.5943 2.4522 1.4076 18 8 3.6012 -0.6649 -0.0046 19 6 2.3227 -1.0963 0.0034 20 6 1.8857 -2.4943 0.0071 21 8 0.6990 -2.7605 0.0140 22 8 2.7995 -3.4865 0.0030 23 1 -0.3634 0.0031 1.0276 24 1 -0.3634 0.8884 -0.5166 25 1 -0.3633 -0.8916 -0.5112 26 1 2.0303 2.1590 0.0004 27 1 5.6590 1.0127 -0.5313 28 1 4.6414 2.4731 -0.5273 29 1 4.4567 3.7855 1.0278 30 1 3.8849 2.9775 2.5500 31 1 6.1499 2.9928 3.5113 32 1 5.0157 6.0729 4.9221 33 1 7.3835 1.7865 1.7570 34 1 6.8562 2.9679 0.4837 35 1 2.4632 -4.3932 0.0053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600192161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:40 Heat of formation + Delta-G solvation = -64.430568 kcal Electronic energy + Delta-G solvation = -19458.589490 eV Core-core repulsion = 16230.570276 eV Total energy + Delta-G solvation = -3228.019215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.87644 -41.04349 -40.62107 -37.34627 -35.20638 -34.89964 -33.31811 -30.34453 -28.94985 -27.76065 -26.55595 -25.07032 -23.48420 -22.47586 -20.77399 -20.48305 -19.46662 -18.72034 -18.48543 -17.76488 -16.81784 -16.65142 -16.25468 -16.14568 -15.64468 -15.03350 -14.76727 -14.52577 -14.13911 -14.11623 -13.88392 -13.74896 -13.40471 -13.17797 -12.89742 -12.84151 -12.72414 -12.34708 -12.10910 -11.80044 -11.72912 -11.23230 -10.90369 -10.73278 -10.50298 -9.84710 -9.63523 -8.13474 -6.24966 -0.31324 1.11277 1.36475 1.44195 1.47055 1.57774 1.73066 2.18269 2.44580 3.16510 3.26242 3.57393 3.64770 3.92464 4.14782 4.21329 4.31871 4.37416 4.50686 4.53884 4.65491 4.70430 4.72211 4.81505 4.96676 5.01060 5.04882 5.23040 5.25372 5.39118 5.45366 5.64939 5.85087 5.86345 6.25269 6.32520 6.83457 6.85755 7.44406 8.96497 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.037197 B = 0.003803 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.567777 B = 7360.449956 C = 7718.585333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.064 4.064 3 C -0.226 4.226 4 C 0.060 3.940 5 C 0.087 3.913 6 N -0.489 5.489 7 C 0.019 3.981 8 C 0.018 3.982 9 C -0.527 4.527 10 H 0.065 0.935 11 C 0.015 3.985 12 N -0.923 5.923 13 Si 0.957 3.043 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.284 1.284 17 C 0.014 3.986 18 O -0.159 6.159 19 C -0.114 4.114 20 C 0.580 3.420 21 O -0.513 6.513 22 O -0.503 6.503 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.172 0.828 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 -11.256 -11.283 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.066 4.066 3 C -0.245 4.245 4 C 0.007 3.993 5 C -0.040 4.040 6 N -0.212 5.212 7 C -0.110 4.110 8 C -0.001 4.001 9 C -0.565 4.565 10 H 0.083 0.917 11 C -0.184 4.184 12 N -0.562 5.562 13 Si 0.783 3.217 14 H -0.185 1.185 15 H -0.207 1.207 16 H -0.210 1.210 17 C -0.114 4.114 18 O -0.055 6.055 19 C -0.163 4.163 20 C 0.426 3.574 21 O -0.405 6.405 22 O -0.317 6.317 23 H 0.100 0.900 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.190 0.810 27 H 0.125 0.875 28 H 0.117 0.883 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -6.287 -11.752 -10.813 17.163 hybrid contribution -0.008 1.024 -0.052 1.026 sum -6.295 -10.728 -10.865 16.515 Atomic orbital electron populations 1.20543 0.86328 1.04520 1.03707 1.20984 0.98690 0.90340 0.96620 1.21764 0.91164 1.01015 1.10566 1.23038 0.97877 0.80033 0.98384 1.21387 0.92397 0.97127 0.93137 1.68831 1.06198 1.28746 1.17395 1.23930 0.99865 0.88418 0.98812 1.20050 0.92589 0.93947 0.93535 1.21404 1.29732 0.93666 1.11670 0.91681 1.25822 0.94898 1.03103 0.94607 1.70105 1.35213 1.35515 1.15373 0.85522 0.78160 0.79836 0.78228 1.18509 1.20729 1.21002 1.23895 0.91650 0.95850 1.00015 1.84064 1.28147 1.22547 1.70747 1.20697 0.82296 0.92483 1.20859 1.18640 0.83079 0.83535 0.72129 1.90940 1.17666 1.83485 1.48449 1.84651 1.41251 1.20850 1.84975 0.89958 0.88880 0.90007 0.81024 0.87530 0.88347 0.91584 0.93802 0.95504 0.92928 0.90592 0.90453 0.69781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.05 9.81 71.23 0.70 -1.35 16 2 C -0.06 -1.76 6.20 -19.73 -0.12 -1.89 16 3 C -0.23 -6.35 10.72 22.07 0.24 -6.11 16 4 C 0.06 1.84 6.90 24.98 0.17 2.01 16 5 C 0.09 2.57 5.34 85.56 0.46 3.03 16 6 N -0.49 -18.37 6.32 -932.54 -5.89 -24.26 16 7 C 0.02 0.81 7.28 83.57 0.61 1.42 16 8 C 0.02 0.87 3.76 -11.20 -0.04 0.83 16 9 C -0.53 -27.33 8.83 25.60 0.23 -27.10 16 10 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 11 C 0.02 0.80 5.46 84.65 0.46 1.27 16 12 N -0.92 -52.90 13.26 21.45 0.28 -52.61 16 13 Si 0.96 41.64 29.54 68.60 2.03 43.67 16 14 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 15 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 C 0.01 0.53 7.25 83.57 0.61 1.14 16 18 O -0.16 -5.12 10.67 -4.83 -0.05 -5.17 16 19 C -0.11 -3.37 7.18 24.04 0.17 -3.19 16 20 C 0.58 14.97 8.30 69.97 0.58 15.55 16 21 O -0.51 -14.05 15.53 19.43 0.30 -13.75 16 22 O -0.50 -9.98 13.44 -56.67 -0.76 -10.74 16 23 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.08 1.81 6.45 -2.38 -0.02 1.80 16 26 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 27 H 0.11 2.73 8.08 -2.39 -0.02 2.71 16 28 H 0.10 2.58 7.30 -2.38 -0.02 2.57 16 29 H 0.07 2.70 7.38 -2.39 -0.02 2.68 16 30 H 0.04 2.05 8.14 -2.38 -0.02 2.04 16 31 H 0.03 1.49 8.11 -2.38 -0.02 1.47 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.08 2.67 7.87 -2.38 -0.02 2.65 16 35 H 0.44 3.50 9.11 -74.06 -0.67 2.82 16 Total: -1.00 -65.07 308.17 0.41 -64.66 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.44 Total: 12.60 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.06 Total: -14.41 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -5.61 Total: -76.87 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.51 Total: -29.66 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -65.07 0.41 -64.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600192161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.233 kcal (2) G-P(sol) polarization free energy of solvation -65.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds