Wall clock time and date at job start Mon Mar 30 2020 00:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 H 1.09003 * 109.47279 * 325.00167 * 12 11 10 14 14 C 1.50694 * 109.47106 * 85.00220 * 12 11 10 15 15 O 1.20829 * 120.00042 * 0.02562 * 14 12 11 16 16 O 1.34232 * 120.00362 * 180.02562 * 14 12 11 17 17 C 1.50701 * 109.46893 * 205.00308 * 12 11 10 18 18 C 1.38285 * 119.97163 * 319.99769 * 17 12 11 19 19 C 1.38247 * 120.11233 * 180.02562 * 18 17 12 20 20 C 1.38170 * 120.05380 * 359.95909 * 19 18 17 21 21 C 1.38712 * 119.94081 * 0.02562 * 20 19 18 22 22 O 1.35907 * 120.05364 * 180.02562 * 21 20 19 23 23 C 1.38123 * 119.97109 * 139.72575 * 17 12 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.00899 * 111.00283 * 303.95539 * 11 10 9 30 30 H 0.96700 * 117.00257 * 179.97438 * 16 14 12 31 31 H 1.07998 * 119.94670 * 359.97438 * 18 17 12 32 32 H 1.07999 * 119.97675 * 179.97438 * 19 18 17 33 33 H 1.07997 * 120.02601 * 180.02562 * 20 19 18 34 34 H 0.96700 * 114.00211 * 89.99469 * 22 21 20 35 35 H 1.08001 * 120.02753 * 359.97438 * 23 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 1 3.3182 -5.8287 -0.5872 14 6 2.8477 -6.3878 1.4178 15 8 2.4155 -5.7272 2.3325 16 8 3.6953 -7.3995 1.6625 17 6 1.7508 -7.2768 -0.5977 18 6 0.4241 -7.5341 -0.3042 19 6 -0.2066 -8.6353 -0.8526 20 6 0.4873 -9.4813 -1.6964 21 6 1.8180 -9.2251 -1.9925 22 8 2.5025 -10.0555 -2.8226 23 6 2.4473 -8.1165 -1.4448 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8714 -3.6047 -0.8890 28 1 2.8726 -3.6039 0.8910 29 1 0.8747 -4.9842 0.7836 30 1 3.9310 -7.5611 2.5864 31 1 -0.1199 -6.8741 0.3552 32 1 -1.2427 -8.8343 -0.6216 33 1 -0.0060 -10.3411 -2.1249 34 1 2.4524 -9.8076 -3.7559 35 1 3.4820 -7.9125 -1.6775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065438.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:02 Heat of formation + Delta-G solvation = -113.175889 kcal Electronic energy + Delta-G solvation = -19434.981441 eV Core-core repulsion = 16204.848471 eV Total energy + Delta-G solvation = -3230.132971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67528 -39.56746 -37.22209 -36.37019 -35.39451 -33.22518 -31.70833 -30.05010 -28.93268 -26.57327 -23.95385 -22.68461 -22.65047 -20.69057 -20.64577 -18.47059 -17.82200 -17.03992 -16.58222 -16.36445 -15.96006 -15.54233 -15.09862 -14.61348 -14.31333 -13.95367 -13.76634 -13.41358 -12.94691 -12.58939 -12.27616 -12.15388 -11.79810 -11.58919 -11.52273 -11.16383 -10.94940 -10.81647 -10.66608 -10.51432 -10.11456 -9.48124 -9.19578 -8.94088 -8.65962 -8.39352 -8.20833 -6.00312 -4.02991 1.12842 1.22936 2.18490 3.02613 3.32261 3.38324 3.41578 3.53091 4.09010 4.37334 4.52422 4.65929 4.80278 5.02624 5.15488 5.21912 5.31924 5.36000 5.47972 5.74138 5.83120 6.16948 6.25158 6.30875 6.35094 6.45540 6.46641 6.68983 6.88442 7.17298 7.51084 7.56573 7.70251 7.84135 7.88036 8.02959 8.40208 9.03388 9.60689 11.11175 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.025513 B = 0.004076 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.237367 B = 6868.587137 C = 7255.117783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.653 5.653 12 C 0.135 3.865 13 H 0.123 0.877 14 C 0.452 3.548 15 O -0.505 6.505 16 O -0.515 6.515 17 C -0.050 4.050 18 C -0.099 4.099 19 C -0.105 4.105 20 C -0.144 4.144 21 C 0.099 3.901 22 O -0.501 6.501 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.017 0.983 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.351 0.649 30 H 0.404 0.596 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.389 0.611 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -19.672 -2.783 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.069 4.069 11 N -0.285 5.285 12 C 0.022 3.978 13 H 0.140 0.860 14 C 0.292 3.708 15 O -0.392 6.392 16 O -0.325 6.325 17 C -0.051 4.051 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.162 4.162 21 C 0.055 3.945 22 O -0.311 6.311 23 C -0.143 4.143 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.172 0.828 30 H 0.262 0.738 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.245 0.755 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.183 -19.572 -3.085 20.067 hybrid contribution 0.835 1.152 1.121 1.811 sum 4.018 -18.420 -1.964 18.955 Atomic orbital electron populations 1.69967 1.06033 1.26638 1.50523 1.24989 0.94843 0.99213 0.95231 0.86576 0.79806 0.83406 0.78093 1.20613 1.21202 1.19926 1.21132 0.92969 0.90886 1.51076 0.92733 1.19048 0.93924 0.90119 0.97942 1.22365 0.97530 0.87789 0.99168 1.61123 1.17050 1.01046 1.49306 1.20376 0.97374 0.91765 0.88302 0.85973 1.25019 0.75186 0.76569 0.94060 1.90764 1.53038 1.48935 1.46494 1.84608 1.60780 1.50869 1.36273 1.19217 0.94221 0.94244 0.97416 1.21060 0.94081 0.96835 0.99786 1.21014 0.99978 0.94376 0.96949 1.21415 0.93596 1.00561 1.00662 1.18335 0.90226 0.90450 0.95498 1.84823 1.73332 1.52059 1.20841 1.21224 1.00550 0.93797 0.98728 0.92956 0.95480 0.96488 0.91855 0.95616 0.82769 0.73813 0.85379 0.85417 0.85590 0.75542 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.71 5.23 -27.88 -0.15 0.56 16 10 C 0.06 1.23 5.32 -3.82 -0.02 1.21 16 11 N -0.65 -11.46 5.56 -109.18 -0.61 -12.07 16 12 C 0.13 1.95 2.70 -70.02 -0.19 1.76 16 13 H 0.12 1.62 7.66 -51.93 -0.40 1.22 16 14 C 0.45 6.64 7.44 36.00 0.27 6.91 16 15 O -0.51 -9.08 16.06 -18.75 -0.30 -9.38 16 16 O -0.51 -5.94 13.34 -39.26 -0.52 -6.46 16 17 C -0.05 -0.65 4.88 -104.65 -0.51 -1.16 16 18 C -0.10 -1.26 9.32 -39.56 -0.37 -1.63 16 19 C -0.11 -1.14 10.04 -39.60 -0.40 -1.53 16 20 C -0.14 -1.50 9.99 -39.43 -0.39 -1.90 16 21 C 0.10 1.10 6.70 -39.22 -0.26 0.84 16 22 O -0.50 -4.82 13.50 -19.45 -0.26 -5.09 16 23 C -0.12 -1.47 9.61 -39.44 -0.38 -1.84 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 28 H 0.03 0.55 7.62 -51.93 -0.40 0.16 16 29 H 0.35 6.35 7.09 -39.29 -0.28 6.07 16 30 H 0.40 2.99 9.10 45.56 0.41 3.41 16 31 H 0.13 1.63 7.24 -52.49 -0.38 1.25 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.39 1.91 9.06 45.56 0.41 2.32 16 35 H 0.13 1.36 8.03 -52.49 -0.42 0.94 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -34.22 310.72 -6.80 -41.02 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -2.70 Total: 7.15 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.81 Total: -10.36 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.13 Total: -38.29 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -1.09 Total: -20.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.22 -6.80 -41.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065438.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.155 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds