Wall clock time and date at job start Mon Mar 30 2020 00:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99808 * 2 1 4 4 N 1.46906 * 109.47234 * 124.14380 * 3 2 1 5 5 C 1.46898 * 110.99708 * 300.25986 * 4 3 2 6 6 C 1.50702 * 109.47309 * 288.16215 * 5 4 3 7 7 H 1.08000 * 119.99351 * 354.74113 * 6 5 4 8 8 C 1.37876 * 120.00188 * 174.74630 * 6 5 4 9 9 N 1.31515 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47298 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47329 * 119.99747 * 10 8 6 13 13 H 1.48507 * 109.47097 * 239.99614 * 10 8 6 14 14 C 1.46901 * 111.00007 * 64.21145 * 4 3 2 15 15 C 1.50702 * 109.47028 * 66.04832 * 14 4 3 16 16 O 1.33631 * 125.80522 * 270.17431 * 15 14 4 17 17 C 1.34223 * 110.91802 * 180.26574 * 16 15 14 18 18 C 1.34154 * 109.14823 * 359.74186 * 17 16 15 19 19 C 1.36495 * 125.81127 * 89.99969 * 15 14 4 20 20 C 1.47236 * 127.19566 * 0.02562 * 19 15 14 21 21 O 1.21529 * 120.00229 * 359.70505 * 20 19 15 22 22 O 1.34772 * 119.99723 * 179.70723 * 20 19 15 23 23 H 1.08005 * 120.00319 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99983 * 179.97438 * 1 2 3 25 25 H 1.07995 * 120.00388 * 180.02562 * 2 1 3 26 26 H 1.09004 * 109.47316 * 4.14420 * 3 2 1 27 27 H 1.08996 * 109.47375 * 244.14124 * 3 2 1 28 28 H 1.08998 * 109.47196 * 48.16399 * 5 4 3 29 29 H 1.09008 * 109.47172 * 168.15965 * 5 4 3 30 30 H 0.96998 * 120.00055 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.46968 * 306.05205 * 14 4 3 32 32 H 1.08996 * 109.46883 * 186.04856 * 14 4 3 33 33 H 1.08011 * 125.42419 * 179.71187 * 17 16 15 34 34 H 1.07997 * 127.02736 * 179.97438 * 18 17 16 35 35 H 0.96698 * 117.00110 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9815 1.3406 1.1463 5 6 2.2476 1.2145 2.4126 6 6 1.4883 2.4881 2.6821 7 1 1.6116 3.3388 2.0283 8 6 0.6365 2.5672 3.7633 9 7 0.4861 1.5310 4.5592 10 14 -0.3052 4.1455 4.0970 11 1 0.0371 5.1543 3.0624 12 1 -1.7638 3.8698 4.0566 13 1 0.0630 4.6676 5.4376 14 6 4.0110 0.2993 1.0286 15 6 4.8987 0.6017 -0.1511 16 8 4.7011 0.1848 -1.4053 17 6 5.6777 0.6228 -2.2153 18 6 6.5478 1.3524 -1.5009 19 6 6.0394 1.3506 -0.1211 20 6 6.6389 2.0128 1.0494 21 8 6.1045 1.9247 2.1373 22 8 7.7804 2.7165 0.9143 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 1.3574 2.1323 0.0743 27 1 2.6332 1.3957 -0.9247 28 1 1.5478 0.3816 2.3455 29 1 2.9521 1.0327 3.2243 30 1 -0.1134 1.5865 5.3197 31 1 3.5330 -0.6696 0.8847 32 1 4.6109 0.2771 1.9384 33 1 5.7514 0.4198 -3.2736 34 1 7.4397 1.8408 -1.8648 35 1 8.1358 3.1337 1.7109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602891138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:42 Heat of formation + Delta-G solvation = -44.317194 kcal Electronic energy + Delta-G solvation = -20229.799064 eV Core-core repulsion = 17002.652031 eV Total energy + Delta-G solvation = -3227.147033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.52594 -39.53827 -37.41309 -35.75941 -32.98236 -32.76544 -32.33688 -30.27097 -27.27673 -26.29828 -24.55447 -23.32804 -21.57410 -20.99025 -19.75740 -18.88591 -17.92313 -17.08312 -16.35902 -16.20500 -15.35521 -15.16654 -15.06866 -14.56245 -14.30971 -14.22260 -13.68152 -13.12721 -12.77961 -12.62331 -12.16772 -12.06964 -11.40797 -11.32169 -11.18804 -10.97104 -10.70817 -10.62424 -10.45688 -10.25262 -9.95162 -9.77433 -9.25312 -8.74289 -8.56683 -8.36617 -7.30549 -5.97114 -3.97222 1.37936 2.05398 2.81635 2.89469 3.30660 3.34073 3.39072 3.41522 3.46777 4.46491 4.58775 4.91104 5.09659 5.18064 5.38767 5.47700 5.53191 5.62330 5.81918 5.87651 6.00031 6.05003 6.20057 6.33210 6.42328 6.64531 6.72702 7.10342 7.16116 7.25724 7.32119 7.43175 7.83253 8.08228 8.16954 8.20772 8.53651 9.09574 9.65762 11.13700 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.019142 B = 0.006388 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.408404 B = 4381.972856 C = 5361.674468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 C 0.086 3.914 4 N -0.516 5.516 5 C 0.193 3.807 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.114 3.886 15 C 0.120 3.880 16 O -0.171 6.171 17 C -0.051 4.051 18 C -0.172 4.172 19 C -0.227 4.227 20 C 0.551 3.449 21 O -0.491 6.491 22 O -0.519 6.519 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.009 0.991 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.206 0.794 34 H 0.158 0.842 35 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -2.737 -12.549 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.201 4.201 3 C -0.042 4.042 4 N -0.240 5.240 5 C 0.069 3.931 6 C -0.537 4.537 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.014 4.014 15 C 0.066 3.934 16 O -0.066 6.066 17 C -0.116 4.116 18 C -0.191 4.191 19 C -0.230 4.230 20 C 0.394 3.606 21 O -0.379 6.379 22 O -0.331 6.331 23 H 0.116 0.884 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.135 0.865 33 H 0.223 0.777 34 H 0.176 0.824 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.243 -2.706 -12.515 16.398 hybrid contribution -0.480 0.403 0.719 0.953 sum 9.764 -2.304 -11.796 15.485 Atomic orbital electron populations 1.23698 0.95966 1.01199 1.00436 1.23484 0.96746 0.99586 1.00304 1.21336 0.94825 0.94785 0.93290 1.62481 1.13532 1.43081 1.04876 1.19808 0.92162 0.97461 0.83651 1.21113 1.23416 0.98459 1.10755 0.91967 1.24944 0.96978 0.96452 0.96133 1.69965 1.38009 1.29609 1.16231 0.86483 0.79411 0.83598 0.78181 1.19725 1.21173 1.21070 1.20985 0.93813 0.95169 0.91385 1.23151 0.93931 0.92397 0.83941 1.83856 1.44454 1.60773 1.17530 1.23834 0.89220 1.02020 0.96538 1.22829 1.01899 1.02909 0.91469 1.20011 1.00186 1.09528 0.93308 1.19609 0.77756 0.75831 0.87357 1.90998 1.60869 1.58383 1.27606 1.84535 1.40125 1.64229 1.44229 0.88423 0.89595 0.88586 0.89415 0.92234 0.97281 0.95296 0.93080 0.93271 0.86466 0.77741 0.82401 0.73172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 14.32 29.02 0.42 -2.69 16 2 C -0.18 -3.33 7.42 -36.02 -0.27 -3.60 16 3 C 0.09 1.69 5.49 -4.97 -0.03 1.66 16 4 N -0.52 -11.36 4.65 -238.95 -1.11 -12.47 16 5 C 0.19 5.06 4.58 -4.98 -0.02 5.04 16 6 C -0.50 -14.18 8.53 -34.44 -0.29 -14.47 16 7 H 0.06 1.78 7.66 -52.49 -0.40 1.38 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 10 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.11 2.16 4.80 -4.97 -0.02 2.14 16 15 C 0.12 1.99 5.95 -34.94 -0.21 1.79 16 16 O -0.17 -2.47 9.78 7.69 0.08 -2.40 16 17 C -0.05 -0.56 12.03 29.29 0.35 -0.21 16 18 C -0.17 -2.12 11.05 -37.45 -0.41 -2.53 16 19 C -0.23 -3.63 6.32 -103.30 -0.65 -4.28 16 20 C 0.55 9.13 8.33 34.39 0.29 9.42 16 21 O -0.49 -9.88 15.64 -19.29 -0.30 -10.18 16 22 O -0.52 -6.53 13.34 -40.69 -0.54 -7.07 16 23 H 0.10 1.77 7.84 -52.48 -0.41 1.36 16 24 H 0.09 1.36 8.06 -52.49 -0.42 0.94 16 25 H 0.10 1.66 6.80 -52.49 -0.36 1.30 16 26 H 0.09 1.87 7.04 -51.93 -0.37 1.50 16 27 H 0.06 1.08 6.59 -51.93 -0.34 0.74 16 28 H 0.01 0.26 6.71 -51.93 -0.35 -0.09 16 29 H 0.03 0.82 7.81 -51.92 -0.41 0.42 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.05 0.87 6.34 -51.93 -0.33 0.54 16 32 H 0.12 2.35 6.21 -51.93 -0.32 2.03 16 33 H 0.21 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.41 3.33 9.11 45.56 0.42 3.74 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -33.52 306.43 -5.77 -39.29 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -3.27 Total: 3.61 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -0.95 Total: -6.24 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.37 Total: -38.64 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.77 Total: -19.65 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.52 -5.77 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602891138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.024 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds