Wall clock time and date at job start Mon Mar 30 2020 00:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46491 * 109.46988 * 195.01653 * 3 2 1 5 5 C 1.36937 * 120.00293 * 268.47478 * 4 3 2 6 6 H 1.07998 * 120.00552 * 190.27003 * 5 4 3 7 7 C 1.38819 * 119.99669 * 10.26874 * 5 4 3 8 8 N 1.31620 * 120.00136 * 24.73035 * 7 5 4 9 9 Si 1.86803 * 119.99931 * 204.72622 * 7 5 4 10 10 H 1.48500 * 109.47053 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47058 * 120.00360 * 9 7 5 12 12 H 1.48505 * 109.46760 * 240.00103 * 9 7 5 13 13 C 1.46502 * 120.00225 * 88.47283 * 4 3 2 14 14 C 1.52990 * 109.47485 * 270.00149 * 13 4 3 15 15 H 1.08998 * 110.44371 * 305.70261 * 14 13 4 16 16 C 1.54164 * 110.61082 * 183.06056 * 14 13 4 17 17 C 1.51456 * 103.27528 * 241.27918 * 16 14 13 18 18 C 1.41554 * 125.97726 * 179.97438 * 17 16 14 19 19 O 1.21665 * 120.00224 * 179.97438 * 18 17 16 20 20 O 1.34931 * 119.99479 * 359.97245 * 18 17 16 21 21 C 1.33873 * 108.04933 * 359.97438 * 17 16 14 22 22 C 1.50700 * 122.92497 * 180.02562 * 21 17 16 23 23 O 1.33752 * 114.14543 * 0.02562 * 21 17 16 24 24 H 4.40641 * 5.51458 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.46813 * 75.01506 * 3 2 1 26 26 H 1.09002 * 109.47298 * 315.02069 * 3 2 1 27 27 H 0.96993 * 120.00562 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.47200 * 149.99709 * 13 4 3 29 29 H 1.09006 * 109.46954 * 30.00545 * 13 4 3 30 30 H 1.09001 * 110.65463 * 359.71764 * 16 14 13 31 31 H 1.08996 * 110.66254 * 122.83215 * 16 14 13 32 32 H 0.96703 * 113.99144 * 180.02562 * 20 18 17 33 33 H 1.09004 * 109.46924 * 180.02562 * 22 21 17 34 34 H 1.09004 * 109.47588 * 300.02286 * 22 21 17 35 35 H 1.08997 * 109.47829 * 60.02923 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3349 0.3578 5 6 3.3912 2.2555 -0.6226 6 1 3.9038 3.1744 -0.3793 7 6 2.9935 2.0076 -1.9293 8 7 1.9900 1.1900 -2.1678 9 14 3.8825 2.8343 -3.3490 10 1 4.9655 3.7004 -2.8178 11 1 4.4673 1.7982 -4.2375 12 1 2.9207 3.6622 -4.1203 13 6 3.3458 1.6843 1.7647 14 6 2.0600 2.2795 2.3419 15 1 1.7208 3.1168 1.7320 16 6 2.2766 2.7273 3.8010 17 6 1.2949 1.8735 4.5763 18 6 1.0968 1.8987 5.9777 19 8 0.2744 1.1623 6.4891 20 8 1.8201 2.7394 6.7462 21 6 0.6472 1.0909 3.7044 22 6 -0.4125 0.1034 4.1204 23 8 1.0225 1.2618 2.4321 24 1 -1.0503 -0.0003 -0.0003 25 1 3.0094 -0.2649 -0.9928 26 1 3.0097 -0.7261 0.7264 27 1 1.7118 1.0170 -3.0808 28 1 4.1506 2.4157 1.8400 29 1 3.6152 0.7888 2.3248 30 1 3.2990 2.5220 4.1185 31 1 2.0417 3.7853 3.9175 32 1 1.6150 2.6845 7.6896 33 1 -0.7921 -0.4147 3.2397 34 1 0.0176 -0.6218 4.8113 35 1 -1.2296 0.6322 4.6110 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609152961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:56 Heat of formation + Delta-G solvation = -43.727893 kcal Electronic energy + Delta-G solvation = -20434.607974 eV Core-core repulsion = 17207.486495 eV Total energy + Delta-G solvation = -3227.121479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.21824 -40.62058 -37.87052 -36.92709 -34.13108 -33.86811 -33.26830 -32.16564 -29.36465 -27.87588 -26.54752 -24.60018 -23.53787 -22.48620 -20.43106 -19.34223 -18.82453 -18.11219 -17.97001 -17.41657 -16.67844 -16.15419 -16.09142 -15.57823 -15.49041 -15.04553 -14.66875 -14.11038 -13.91114 -13.77189 -13.55631 -13.40710 -13.27291 -12.76770 -12.69425 -12.60001 -12.41311 -12.26959 -12.19786 -12.08029 -11.79590 -11.46601 -10.70944 -10.58159 -10.13104 -9.41058 -8.96145 -7.81079 -5.17869 0.17801 1.48731 1.53488 1.61491 2.08016 2.14724 2.46658 2.61261 2.64324 2.80975 3.29035 3.51517 3.73520 3.92824 4.08417 4.09648 4.27330 4.41552 4.49879 4.60841 4.70124 4.80190 4.89090 4.93220 4.96929 5.08431 5.15560 5.29341 5.40372 5.65775 5.68278 5.78774 6.13324 6.27625 7.11384 7.11795 7.57427 7.84719 8.25750 9.20140 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.005570 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.089170 B = 5025.954706 C = 5660.779261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.107 4.107 3 C 0.271 3.729 4 N -0.597 5.597 5 C -0.268 4.268 6 H 0.084 0.916 7 C -0.046 4.046 8 N -0.911 5.911 9 Si 0.956 3.044 10 H -0.266 1.266 11 H -0.294 1.294 12 H -0.303 1.303 13 C 0.143 3.857 14 C 0.052 3.948 15 H 0.078 0.922 16 C -0.073 4.073 17 C -0.369 4.369 18 C 0.558 3.442 19 O -0.561 6.561 20 O -0.504 6.504 21 C 0.203 3.797 22 C -0.098 4.098 23 O -0.275 6.275 24 H 0.208 0.792 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.245 0.755 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.423 0.577 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 0.380 14.140 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.110 4.110 3 C 0.146 3.854 4 N -0.316 5.316 5 C -0.398 4.398 6 H 0.101 0.899 7 C -0.242 4.242 8 N -0.556 5.556 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.221 1.221 12 H -0.231 1.231 13 C 0.017 3.983 14 C -0.006 4.006 15 H 0.096 0.904 16 C -0.111 4.111 17 C -0.373 4.373 18 C 0.409 3.591 19 O -0.457 6.457 20 O -0.316 6.316 21 C 0.150 3.850 22 C -0.154 4.154 23 O -0.183 6.183 24 H 0.225 0.775 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.282 0.718 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.117 0.114 13.432 13.433 hybrid contribution -0.259 0.698 -0.591 0.950 sum -0.376 0.812 12.841 12.872 Atomic orbital electron populations 1.24594 0.95952 1.04197 1.07004 1.24214 0.95559 0.96637 0.94560 1.17771 0.83369 0.85630 0.98663 1.44397 1.75027 1.10636 1.01518 1.19569 1.30833 1.01435 0.87924 0.89870 1.25455 0.97773 1.00941 1.00002 1.70349 1.25167 1.41410 1.18655 0.85392 0.78457 0.77474 0.80133 1.19071 1.22081 1.23111 1.21462 0.93290 0.99639 0.83949 1.24776 0.89528 0.89147 0.97131 0.90364 1.21428 0.99756 0.99794 0.90160 1.19617 1.12745 1.12543 0.92350 1.18121 0.77316 0.76668 0.86949 1.90882 1.36371 1.42694 1.75794 1.85030 1.61709 1.59214 1.25640 1.22647 0.89215 0.89401 0.83734 1.20882 0.95291 0.96740 1.02442 1.87073 1.52456 1.55473 1.23289 0.77462 0.91454 0.92594 0.94529 0.89188 0.91631 0.88389 0.89522 0.71823 0.89927 0.87907 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.44 18.50 74.32 1.37 -12.07 16 2 C -0.11 -5.11 9.53 31.13 0.30 -4.81 16 3 C 0.27 12.63 5.47 84.58 0.46 13.09 16 4 N -0.60 -27.31 2.49 -712.55 -1.77 -29.08 16 5 C -0.27 -13.57 9.69 84.04 0.81 -12.76 16 6 H 0.08 4.04 7.92 -2.91 -0.02 4.02 16 7 C -0.05 -2.41 4.87 84.86 0.41 -1.99 16 8 N -0.91 -51.23 9.26 21.65 0.20 -51.03 16 9 Si 0.96 43.26 29.62 68.60 2.03 45.29 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 13 C 0.14 5.14 5.27 86.38 0.45 5.59 16 14 C 0.05 1.79 4.10 30.99 0.13 1.92 16 15 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 16 C -0.07 -2.03 6.44 30.48 0.20 -1.83 16 17 C -0.37 -10.73 6.06 -19.80 -0.12 -10.85 16 18 C 0.56 15.02 8.07 68.64 0.55 15.57 16 19 O -0.56 -16.79 15.31 19.30 0.30 -16.49 16 20 O -0.50 -10.36 13.34 -58.47 -0.78 -11.14 16 21 C 0.20 6.31 7.05 24.69 0.17 6.49 16 22 C -0.10 -2.52 8.78 71.24 0.63 -1.89 16 23 O -0.27 -10.12 7.77 -70.54 -0.55 -10.67 16 24 H 0.21 7.91 7.80 -4.40 -0.03 7.87 16 25 H 0.07 3.51 6.31 -2.38 -0.02 3.50 16 26 H 0.06 2.29 7.91 -2.39 -0.02 2.27 16 27 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 28 H 0.09 2.91 8.03 -2.38 -0.02 2.89 16 29 H 0.07 2.16 7.91 -2.38 -0.02 2.14 16 30 H 0.10 2.39 7.74 -2.39 -0.02 2.37 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.42 4.61 8.98 -74.05 -0.66 3.94 16 33 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.10 2.50 7.75 -2.39 -0.02 2.48 16 35 H 0.10 2.47 7.75 -2.39 -0.02 2.45 16 Total: -1.00 -64.57 303.78 5.24 -59.32 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.44 Total: 17.36 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 5.37 Total: -3.55 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -1.57 Total: -80.11 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -1.03 Total: -38.31 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.57 5.24 -59.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609152961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.595 kcal (2) G-P(sol) polarization free energy of solvation -64.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds