Wall clock time and date at job start Mon Mar 30 2020 00:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47370 * 24.13783 * 3 2 1 5 5 C 1.36929 * 120.00029 * 95.74827 * 4 3 2 6 6 H 1.08005 * 119.99923 * 163.90687 * 5 4 3 7 7 C 1.38808 * 120.00573 * 343.90747 * 5 4 3 8 8 N 1.31624 * 119.99493 * 336.87968 * 7 5 4 9 9 Si 1.86804 * 120.00460 * 156.60139 * 7 5 4 10 10 H 1.48499 * 109.46909 * 86.70950 * 9 7 5 11 11 H 1.48502 * 109.47115 * 206.70727 * 9 7 5 12 12 H 1.48496 * 109.47014 * 326.70666 * 9 7 5 13 13 C 1.46503 * 119.99620 * 275.74684 * 4 3 2 14 14 C 1.52993 * 109.47000 * 270.00278 * 13 4 3 15 15 H 1.08996 * 110.44760 * 61.10938 * 14 13 4 16 16 C 1.54172 * 110.49171 * 183.81446 * 14 13 4 17 17 C 1.51451 * 103.27218 * 118.66734 * 16 14 13 18 18 C 1.41559 * 125.97073 * 179.97438 * 17 16 14 19 19 O 1.21662 * 120.00108 * 180.02562 * 18 17 16 20 20 O 1.34926 * 120.00196 * 0.02991 * 18 17 16 21 21 C 1.33862 * 108.05299 * 359.97438 * 17 16 14 22 22 C 1.50710 * 122.92818 * 180.02562 * 21 17 16 23 23 O 1.33756 * 114.14494 * 359.97438 * 21 17 16 24 24 H 4.40647 * 5.51327 * 180.02562 * 4 1 2 25 25 H 1.08996 * 109.47073 * 264.12845 * 3 2 1 26 26 H 1.09003 * 109.46571 * 144.13941 * 3 2 1 27 27 H 0.97009 * 119.99867 * 179.72785 * 8 7 5 28 28 H 1.09003 * 109.47119 * 30.00650 * 13 4 3 29 29 H 1.08995 * 109.46773 * 150.00074 * 13 4 3 30 30 H 1.09005 * 110.65498 * 237.11379 * 16 14 13 31 31 H 1.08995 * 110.65612 * 0.21639 * 16 14 13 32 32 H 0.96703 * 114.00234 * 179.97438 * 20 18 17 33 33 H 1.08994 * 109.47223 * 179.97438 * 22 21 17 34 34 H 1.09002 * 109.46982 * 299.97410 * 22 21 17 35 35 H 1.08998 * 109.46842 * 59.97216 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2595 -0.5648 5 6 3.4753 -1.3298 -1.8893 6 1 4.0701 -2.1556 -2.2510 7 6 3.0558 -0.3398 -2.7672 8 7 1.9998 0.3911 -2.4789 9 14 3.9945 -0.0396 -4.3541 10 1 3.4807 -0.9461 -5.4122 11 1 3.8103 1.3714 -4.7789 12 1 5.4386 -0.3054 -4.1329 13 6 3.2599 -2.4445 0.2875 14 6 4.6563 -2.4788 0.9117 15 1 4.8178 -1.5973 1.5321 16 6 4.8466 -3.7663 1.7382 17 6 5.9997 -4.4589 1.0424 18 6 6.5727 -5.6984 1.4159 19 8 7.5009 -6.1566 0.7768 20 8 6.0893 -6.3715 2.4806 21 6 6.3824 -3.6942 0.0125 22 6 7.5114 -4.0705 -0.9122 23 8 5.6748 -2.5676 -0.1250 24 1 -1.0498 -0.0002 -0.0003 25 1 3.0093 0.1059 1.0222 26 1 3.0089 0.8337 -0.6021 27 1 1.7090 1.0856 -3.0905 28 1 2.5097 -2.4048 1.0773 29 1 3.1081 -3.3415 -0.3129 30 1 5.1076 -3.5264 2.7690 31 1 3.9487 -4.3831 1.7014 32 1 6.5437 -7.2066 2.6574 33 1 7.6348 -3.2959 -1.6690 34 1 8.4333 -4.1685 -0.3389 35 1 7.2827 -5.0194 -1.3974 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609152962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:58 Heat of formation + Delta-G solvation = -48.226762 kcal Electronic energy + Delta-G solvation = -20138.714725 eV Core-core repulsion = 16911.398160 eV Total energy + Delta-G solvation = -3227.316565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.22806 -40.62351 -37.88616 -36.92759 -34.12242 -33.88682 -33.42950 -32.19059 -29.35965 -27.94848 -26.54884 -24.62363 -23.53367 -22.53009 -20.38978 -19.38374 -18.83188 -18.26514 -17.97903 -17.22074 -16.80030 -16.13713 -16.12064 -15.59120 -15.32596 -15.31191 -14.70809 -14.21773 -13.83836 -13.80257 -13.56872 -13.34552 -13.23726 -12.81992 -12.65117 -12.55896 -12.42268 -12.41048 -12.25073 -12.13740 -11.87873 -11.46406 -10.77785 -10.69548 -10.30255 -9.41940 -8.88366 -7.81583 -5.20020 0.17581 1.46447 1.50668 1.59060 2.07587 2.13180 2.35162 2.53800 2.60875 2.62205 3.29390 3.50374 3.73755 3.94072 4.02055 4.05599 4.16608 4.39765 4.48517 4.60868 4.70483 4.74876 4.84814 4.93335 4.98627 5.08522 5.15694 5.27686 5.35278 5.66028 5.66188 5.73664 6.10429 6.32099 7.11677 7.12996 7.36618 7.84577 8.25129 9.20243 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.021633 B = 0.006018 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.015265 B = 4651.467516 C = 5722.570392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.134 4.134 3 C 0.268 3.732 4 N -0.594 5.594 5 C -0.249 4.249 6 H 0.069 0.931 7 C -0.047 4.047 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.292 1.292 11 H -0.296 1.296 12 H -0.274 1.274 13 C 0.142 3.858 14 C 0.058 3.942 15 H 0.110 0.890 16 C -0.075 4.075 17 C -0.369 4.369 18 C 0.557 3.443 19 O -0.562 6.562 20 O -0.504 6.504 21 C 0.203 3.797 22 C -0.101 4.101 23 O -0.281 6.281 24 H 0.221 0.779 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.245 0.755 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.423 0.577 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -8.377 10.146 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.137 4.137 3 C 0.142 3.858 4 N -0.314 5.314 5 C -0.379 4.379 6 H 0.087 0.913 7 C -0.243 4.243 8 N -0.560 5.560 9 Si 0.780 3.220 10 H -0.219 1.219 11 H -0.222 1.222 12 H -0.199 1.199 13 C 0.016 3.984 14 C 0.001 3.999 15 H 0.128 0.872 16 C -0.113 4.113 17 C -0.372 4.372 18 C 0.409 3.591 19 O -0.458 6.458 20 O -0.316 6.316 21 C 0.150 3.850 22 C -0.157 4.157 23 O -0.190 6.190 24 H 0.237 0.763 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.282 0.718 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.170 -7.778 9.654 14.322 hybrid contribution 0.019 -0.213 -0.987 1.010 sum 7.189 -7.991 8.668 13.808 Atomic orbital electron populations 1.25024 0.96418 1.03065 1.06782 1.24731 0.96190 0.97812 0.94979 1.17792 0.82691 0.89454 0.95823 1.44170 1.74509 1.06168 1.06510 1.19297 1.25198 1.08482 0.84882 0.91300 1.25435 0.97454 1.00946 1.00465 1.70295 1.22843 1.24825 1.38049 0.85547 0.79426 0.76385 0.80631 1.21945 1.22208 1.19907 1.21252 0.92916 0.89726 0.94549 1.24742 0.88764 0.99690 0.86677 0.87220 1.21448 0.96682 0.93433 0.99723 1.19624 1.10279 1.00417 1.06883 1.18146 0.79603 0.83767 0.77628 1.90885 1.30338 1.70025 1.54566 1.85021 1.61257 1.38961 1.46313 1.22588 0.88470 0.83398 0.90506 1.20906 0.93805 1.02978 0.97967 1.86961 1.43890 1.36313 1.51805 0.76258 0.91243 0.91340 0.94527 0.90143 0.93747 0.88154 0.89238 0.71824 0.89875 0.87543 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.75 19.25 74.32 1.43 -11.32 16 2 C -0.13 -6.28 11.64 31.13 0.36 -5.92 16 3 C 0.27 12.08 5.41 84.57 0.46 12.54 16 4 N -0.59 -27.44 2.46 -712.57 -1.75 -29.19 16 5 C -0.25 -13.05 9.12 84.03 0.77 -12.28 16 6 H 0.07 3.64 7.85 -2.91 -0.02 3.62 16 7 C -0.05 -2.57 4.83 84.86 0.41 -2.16 16 8 N -0.91 -51.92 9.53 21.65 0.21 -51.72 16 9 Si 0.95 44.56 29.61 68.60 2.03 46.59 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.14 5.22 5.28 86.38 0.46 5.67 16 14 C 0.06 1.80 4.14 30.99 0.13 1.92 16 15 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 16 C -0.08 -1.91 6.44 30.48 0.20 -1.71 16 17 C -0.37 -10.39 6.06 -19.80 -0.12 -10.51 16 18 C 0.56 14.76 8.07 68.64 0.55 15.32 16 19 O -0.56 -16.76 15.31 19.31 0.30 -16.47 16 20 O -0.50 -10.10 13.34 -58.42 -0.78 -10.88 16 21 C 0.20 6.18 7.05 24.69 0.17 6.35 16 22 C -0.10 -2.58 8.79 71.24 0.63 -1.96 16 23 O -0.28 -9.95 10.06 -70.57 -0.71 -10.66 16 24 H 0.22 7.71 7.80 -4.43 -0.03 7.67 16 25 H 0.07 2.59 8.11 -2.39 -0.02 2.57 16 26 H 0.07 3.50 6.39 -2.39 -0.02 3.49 16 27 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 28 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 29 H 0.04 1.74 8.04 -2.39 -0.02 1.72 16 30 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.09 2.18 7.73 -2.39 -0.02 2.16 16 32 H 0.42 4.48 8.98 -74.06 -0.67 3.82 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.11 2.48 7.75 -2.39 -0.02 2.46 16 35 H 0.10 2.50 7.75 -2.39 -0.02 2.48 16 Total: -1.00 -66.65 308.93 5.17 -61.47 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.44 Total: 14.90 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.44 Total: -4.05 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -1.55 Total: -80.91 kcal Atomic # 8 Polarization: -36.81 SS G_CDS: -1.19 Total: -38.01 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.65 5.17 -61.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609152962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.247 kcal (2) G-P(sol) polarization free energy of solvation -66.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds