Wall clock time and date at job start Sun Mar 29 2020 23:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46923 * 179.97438 * 18 17 15 20 20 H 1.09003 * 109.47216 * 304.99792 * 19 18 17 21 21 O 1.42897 * 109.46987 * 64.99952 * 19 18 17 22 22 C 1.53001 * 109.46928 * 184.99753 * 19 18 17 23 23 O 1.42903 * 109.47283 * 174.99872 * 22 19 18 24 24 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 26 26 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 29 29 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 30 30 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 31 31 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 32 32 H 0.96696 * 114.00181 * 60.00503 * 21 19 18 33 33 H 1.09003 * 109.47123 * 295.00153 * 22 19 18 34 34 H 1.09007 * 109.46964 * 54.99971 * 22 19 18 35 35 H 0.96695 * 113.99949 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9753 -5.6730 -3.7563 20 1 5.6850 -4.9842 -4.2147 21 8 5.6487 -6.4722 -2.7818 22 6 4.3760 -6.5794 -4.8334 23 8 5.4283 -7.2349 -5.5440 24 1 -0.4850 0.8400 -0.0004 25 1 3.3594 0.3863 1.6623 26 1 5.7821 0.3556 2.0405 27 1 7.2121 -1.2443 0.8416 28 1 6.2399 -2.8385 -0.7537 29 1 5.4035 -3.8783 -2.0213 30 1 3.1964 -5.5609 -2.5460 31 1 3.2877 -4.3366 -3.8349 32 1 5.0768 -7.1096 -2.3327 33 1 3.7343 -7.3255 -4.3646 34 1 3.7879 -5.9789 -5.5276 35 1 5.1209 -7.8268 -6.2441 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646232259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:19 Heat of formation + Delta-G solvation = -116.773510 kcal Electronic energy + Delta-G solvation = -19714.509624 eV Core-core repulsion = 16484.220649 eV Total energy + Delta-G solvation = -3230.288975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.28778 -38.24804 -36.93394 -36.00181 -34.00280 -33.40662 -30.80364 -30.45653 -29.48401 -25.91334 -24.88408 -22.33349 -21.89504 -20.93811 -19.46014 -17.89751 -17.46607 -16.90818 -16.44354 -16.33384 -15.37994 -14.89348 -14.45757 -14.13366 -14.08136 -13.85394 -13.51224 -13.37419 -12.88655 -12.65533 -12.37436 -12.24471 -11.86443 -11.45343 -11.01785 -10.91676 -10.70768 -10.44438 -10.41058 -10.25093 -10.10453 -9.80618 -9.25849 -8.51351 -8.45874 -7.81532 -7.59238 -6.90737 -4.49080 2.10126 2.60801 3.08411 3.16950 3.28647 3.49069 3.94005 3.99773 4.19757 4.29824 4.59533 4.77973 4.86596 4.99463 5.21242 5.32090 5.41401 5.70659 5.82593 5.93603 5.99279 6.09354 6.39055 6.51492 6.79509 7.02512 7.09775 7.22870 7.32570 7.40070 7.52167 7.59612 7.75387 8.01824 8.30027 8.47198 8.63718 8.85879 9.33082 10.06038 Molecular weight = 265.11amu Principal moments of inertia in cm(-1) A = 0.025380 B = 0.005138 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.964696 B = 5448.130116 C = 6238.286996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.289 1.289 7 C -0.403 4.403 8 H 0.124 0.876 9 C 0.118 3.882 10 C -0.226 4.226 11 C -0.065 4.065 12 C -0.254 4.254 13 C -0.040 4.040 14 C -0.250 4.250 15 C 0.561 3.439 16 O -0.530 6.530 17 N -0.742 5.742 18 C 0.097 3.903 19 C 0.097 3.903 20 H 0.110 0.890 21 O -0.550 6.550 22 C 0.047 3.953 23 O -0.565 6.565 24 H 0.287 0.713 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.396 0.604 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.375 0.625 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.299 -7.970 -6.732 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.216 1.216 7 C -0.430 4.430 8 H 0.141 0.859 9 C 0.113 3.887 10 C -0.245 4.245 11 C -0.084 4.084 12 C -0.273 4.273 13 C -0.059 4.059 14 C -0.255 4.255 15 C 0.355 3.645 16 O -0.408 6.408 17 N -0.398 5.398 18 C -0.028 4.028 19 C 0.037 3.963 20 H 0.128 0.872 21 O -0.355 6.355 22 C -0.032 4.032 23 O -0.370 6.370 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.232 0.768 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.222 0.778 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.978 -7.221 -6.628 12.032 hybrid contribution -0.185 0.190 -0.195 0.329 sum 6.793 -7.030 -6.823 11.921 Atomic orbital electron populations 1.69566 1.08212 1.30335 1.33620 1.26380 0.94865 1.01644 0.91239 0.86391 0.81333 0.79774 0.79217 1.19402 1.16562 1.21608 1.20191 0.90866 0.96606 1.35298 0.85886 1.17548 0.93133 0.89440 0.88593 1.21154 0.94716 1.05006 1.03646 1.20748 0.93735 0.96656 0.97218 1.20302 0.97933 1.03081 1.05987 1.20812 0.93571 0.95957 0.95574 1.19384 0.92784 1.07015 1.06311 1.18371 0.86191 0.79957 0.80004 1.90724 1.14244 1.68811 1.67022 1.45846 1.10310 1.39749 1.43935 1.21679 0.95158 0.92620 0.93333 1.22161 0.94880 0.91718 0.87495 0.87209 1.86620 1.39804 1.53863 1.55239 1.22827 0.89683 0.95802 0.94864 1.86540 1.34371 1.63663 1.52406 0.90270 0.87767 0.88547 0.88473 0.88536 0.76835 0.91601 0.91026 0.77809 0.92943 0.92290 0.77506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.58 13.92 55.56 0.77 -20.80 16 2 C 0.08 2.11 5.47 -17.30 -0.09 2.02 16 3 Si 0.91 20.78 24.51 -169.99 -4.17 16.61 16 4 H -0.27 -5.84 6.76 56.52 0.38 -5.46 16 5 H -0.24 -5.70 6.72 56.52 0.38 -5.32 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.40 -11.33 8.31 -37.81 -0.31 -11.65 16 8 H 0.12 3.82 5.96 -52.49 -0.31 3.51 16 9 C 0.12 3.04 5.03 -106.54 -0.54 2.51 16 10 C -0.23 -5.38 7.00 -38.88 -0.27 -5.65 16 11 C -0.06 -1.36 10.01 -39.60 -0.40 -1.76 16 12 C -0.25 -5.05 10.03 -39.37 -0.39 -5.45 16 13 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 14 C -0.25 -5.91 5.92 -104.37 -0.62 -6.53 16 15 C 0.56 12.75 7.72 -12.51 -0.10 12.65 16 16 O -0.53 -13.98 13.54 5.27 0.07 -13.91 16 17 N -0.74 -12.83 5.45 -61.38 -0.33 -13.16 16 18 C 0.10 1.36 5.31 -4.04 -0.02 1.34 16 19 C 0.10 1.11 3.28 -26.73 -0.09 1.02 16 20 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 21 O -0.55 -6.71 13.25 -40.07 -0.53 -7.24 16 22 C 0.05 0.43 6.68 37.16 0.25 0.68 16 23 O -0.56 -5.55 13.63 -40.07 -0.55 -6.09 16 24 H 0.29 6.99 8.29 -40.82 -0.34 6.65 16 25 H 0.10 2.44 5.00 -52.49 -0.26 2.17 16 26 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 27 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.10 1.63 6.42 -52.49 -0.34 1.29 16 29 H 0.40 6.16 6.52 -40.82 -0.27 5.89 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.37 3.38 9.04 45.56 0.41 3.79 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.38 1.86 9.12 45.56 0.42 2.28 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -33.04 296.38 -5.71 -38.76 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -2.49 Total: 13.39 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.96 Total: -12.01 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.44 Total: -33.97 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.01 Total: -27.24 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.17 Total: 16.61 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.04 -5.71 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646232259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.018 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds