Wall clock time and date at job start Mon Mar 30 2020 00:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35459 * 125.56350 * 2 1 4 4 C 1.39836 * 107.86686 * 180.28916 * 3 2 1 5 5 C 1.50693 * 126.45856 * 179.73879 * 4 3 2 6 6 C 1.37876 * 107.08228 * 359.57685 * 4 3 2 7 7 C 1.46681 * 126.23363 * 180.12393 * 6 4 3 8 8 O 1.21698 * 119.99868 * 0.32860 * 7 6 4 9 9 N 1.34776 * 119.99956 * 180.33020 * 7 6 4 10 10 C 1.46501 * 119.99725 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47175 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99668 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99982 * 179.97438 * 11 10 9 14 14 C 1.37098 * 119.99744 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99878 * 0.02562 * 14 13 11 16 16 C 1.38946 * 119.99947 * 179.97438 * 14 13 11 17 17 N 1.31419 * 119.99851 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00221 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46785 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46849 * 120.00411 * 18 16 14 21 21 H 1.48494 * 109.47395 * 240.00263 * 18 16 14 22 22 N 1.35538 * 125.56567 * 180.02562 * 2 1 3 23 23 H 0.96994 * 125.67560 * 359.95242 * 22 2 1 24 24 H 1.09000 * 109.47418 * 90.00264 * 1 2 3 25 25 H 1.09003 * 109.46632 * 209.99944 * 1 2 3 26 26 H 1.08999 * 109.47122 * 329.99096 * 1 2 3 27 27 H 1.08002 * 126.06353 * 0.02562 * 3 2 1 28 28 H 1.08994 * 109.47254 * 90.02042 * 5 4 3 29 29 H 1.09008 * 109.47102 * 210.02450 * 5 4 3 30 30 H 1.09001 * 109.47207 * 330.02054 * 5 4 3 31 31 H 0.96990 * 119.99923 * 359.97438 * 9 7 6 32 32 H 1.09005 * 109.47036 * 299.99543 * 10 9 7 33 33 H 1.09000 * 109.47294 * 59.99486 * 10 9 7 34 34 H 0.96998 * 119.99934 * 0.02562 * 13 11 10 35 35 H 0.97003 * 119.99628 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6769 -0.0067 5 6 4.8485 1.5593 -0.0147 6 6 3.6122 -0.7018 -0.0010 7 6 4.7860 -1.5814 -0.0023 8 8 5.9050 -1.1029 -0.0029 9 7 4.6253 -2.9196 -0.0028 10 6 5.7977 -3.7981 -0.0035 11 6 5.3478 -5.2363 -0.0034 12 8 4.1642 -5.5014 -0.0032 13 7 6.2605 -6.2279 -0.0045 14 6 5.8511 -7.5364 -0.0049 15 1 4.7972 -7.7724 -0.0047 16 6 6.7920 -8.5587 -0.0066 17 7 8.0744 -8.2714 -0.0073 18 14 6.2343 -10.3416 -0.0064 19 1 4.7503 -10.3959 -0.0049 20 1 6.7530 -11.0226 -1.2198 21 1 6.7562 -11.0234 1.2051 22 7 2.2953 -1.1025 -0.0005 23 1 1.9834 -2.0209 -0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5140 27 1 1.9544 2.1269 0.0004 28 1 5.1488 1.7732 1.0110 29 1 5.6612 1.0501 -0.5327 30 1 4.6189 2.4929 -0.5282 31 1 3.7336 -3.3009 -0.0020 32 1 6.3963 -3.6044 -0.8937 33 1 6.3969 -3.6051 0.8863 34 1 7.2070 -6.0159 -0.0050 35 1 8.7313 -8.9852 -0.0080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344121702.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:55 Heat of formation + Delta-G solvation = -44.753982 kcal Electronic energy + Delta-G solvation = -19152.389018 eV Core-core repulsion = 15957.515795 eV Total energy + Delta-G solvation = -3194.873223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43505 -39.16818 -38.02026 -34.58733 -33.82242 -32.69261 -31.68623 -31.39053 -28.31220 -27.64375 -25.97608 -24.39074 -21.24222 -20.51035 -19.76214 -19.11753 -18.40109 -17.96174 -15.91188 -15.54617 -15.53519 -15.10509 -14.74861 -14.46376 -14.08852 -13.74172 -13.59650 -13.39861 -13.03400 -12.96935 -12.81831 -12.33199 -12.26283 -12.06376 -11.94161 -11.67940 -11.49093 -11.17973 -10.44830 -10.37000 -9.81955 -9.69792 -8.92820 -8.79615 -8.70206 -8.15442 -8.00884 -6.56080 -3.98379 1.48819 2.63893 3.02503 3.06723 3.19052 3.24538 3.34629 3.49676 3.69020 4.07454 4.67908 4.80963 4.92527 5.05517 5.12554 5.17508 5.29052 5.38266 5.62435 5.71449 5.84037 5.89568 5.91337 5.92417 6.01012 6.15463 6.39779 6.58216 6.75615 6.94721 7.34054 7.41687 7.75083 7.87006 8.35179 8.40665 8.99605 9.33878 9.81285 10.60717 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.035116 B = 0.003604 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.155070 B = 7767.906476 C = 8539.306593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.049 3.951 3 C -0.211 4.211 4 C -0.076 4.076 5 C -0.089 4.089 6 C -0.053 4.053 7 C 0.586 3.414 8 O -0.535 6.535 9 N -0.709 5.709 10 C 0.110 3.890 11 C 0.427 3.573 12 O -0.601 6.601 13 N -0.547 5.547 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.893 5.893 18 Si 0.933 3.067 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.536 5.536 23 H 0.418 0.582 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.404 0.596 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.396 0.604 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.041 15.190 -0.023 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C -0.235 4.235 4 C -0.084 4.084 5 C -0.146 4.146 6 C -0.165 4.165 7 C 0.373 3.627 8 O -0.412 6.412 9 N -0.363 5.363 10 C -0.017 4.017 11 C 0.213 3.787 12 O -0.488 6.488 13 N -0.181 5.181 14 C -0.436 4.436 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.760 3.240 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.133 5.133 23 H 0.255 0.745 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.158 0.842 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.241 0.759 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.230 0.770 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.825 14.993 -0.024 17.925 hybrid contribution -0.199 -1.530 0.014 1.543 sum -10.023 13.463 -0.010 16.784 Atomic orbital electron populations 1.20406 0.87765 1.03547 1.02977 1.20509 0.93616 0.86271 1.06450 1.20530 0.91812 0.97786 1.13385 1.19905 0.95468 0.90976 1.02062 1.20326 0.94726 0.97369 1.02141 1.20203 0.82849 0.94138 1.19355 1.17016 0.87544 0.81221 0.76884 1.90792 1.24062 1.75204 1.51191 1.45588 1.10819 1.05148 1.74716 1.20970 0.88010 0.89229 1.03502 1.19726 0.87004 0.86271 0.85746 1.90477 1.16899 1.83729 1.57700 1.41798 1.08460 1.05536 1.62323 1.19780 0.94919 0.80542 1.48313 0.87624 1.25342 0.94819 1.00842 0.96689 1.69626 1.00238 1.34296 1.49128 0.85748 0.79092 0.81312 0.77881 1.19143 1.20560 1.20554 1.41966 1.05504 1.08660 1.57145 0.74467 0.90657 0.91451 0.89873 0.84153 0.91639 0.90075 0.92215 0.75912 0.89580 0.89588 0.76966 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.41 36.00 0.37 -0.23 16 2 C 0.05 0.52 7.13 -81.95 -0.58 -0.07 16 3 C -0.21 -2.41 10.66 -39.98 -0.43 -2.84 16 4 C -0.08 -1.04 6.21 -104.16 -0.65 -1.68 16 5 C -0.09 -1.11 9.82 36.00 0.35 -0.75 16 6 C -0.05 -0.78 7.06 -81.98 -0.58 -1.36 16 7 C 0.59 9.98 7.79 -12.85 -0.10 9.88 16 8 O -0.53 -10.27 14.81 5.19 0.08 -10.20 16 9 N -0.71 -12.12 5.52 -62.80 -0.35 -12.46 16 10 C 0.11 2.04 6.15 -5.19 -0.03 2.01 16 11 C 0.43 9.73 7.85 -10.99 -0.09 9.64 16 12 O -0.60 -15.17 15.24 5.55 0.08 -15.09 16 13 N -0.55 -13.47 5.29 -10.96 -0.06 -13.52 16 14 C -0.31 -8.26 9.68 -14.93 -0.14 -8.40 16 15 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.68 13.05 55.50 0.72 -22.96 16 18 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 22 N -0.54 -6.36 5.99 -5.69 -0.03 -6.40 16 23 H 0.42 4.25 8.19 -40.82 -0.33 3.91 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.16 6.50 -51.92 -0.34 0.82 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.40 6.63 6.57 -40.82 -0.27 6.36 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -31.56 308.71 -6.05 -37.60 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -4.15 Total: 16.26 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -1.97 Total: 6.78 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.29 Total: -55.34 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.16 Total: -25.28 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.56 -6.05 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121702.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.150 kcal (2) G-P(sol) polarization free energy of solvation -31.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds