Wall clock time and date at job start Mon Mar 30 2020 00:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41262 * 126.70317 * 2 1 4 4 C 1.36825 * 103.84658 * 179.97438 * 3 2 1 5 5 C 1.47516 * 126.94284 * 179.97438 * 4 3 2 6 6 O 1.21582 * 120.00023 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99599 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99594 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.88180 * 31.12410 * 8 7 5 10 10 C 1.55157 * 110.99926 * 155.00154 * 8 7 5 11 11 C 1.54321 * 102.93981 * 82.57526 * 10 8 7 12 12 N 1.47020 * 107.27348 * 22.19198 * 11 10 8 13 13 C 1.36929 * 125.64817 * 181.02587 * 12 11 10 14 14 H 1.08001 * 120.00390 * 185.86016 * 13 12 11 15 15 C 1.38815 * 120.00214 * 5.85300 * 13 12 11 16 16 N 1.31620 * 119.99646 * 7.32913 * 15 13 12 17 17 Si 1.86797 * 120.00191 * 187.32803 * 15 13 12 18 18 H 1.48501 * 109.47357 * 265.01605 * 17 15 13 19 19 H 1.48499 * 109.47206 * 25.01555 * 17 15 13 20 20 H 1.48494 * 109.47172 * 145.01502 * 17 15 13 21 21 C 1.47423 * 108.70333 * 1.28517 * 12 11 10 22 22 O 1.34636 * 106.11292 * 0.24534 * 4 3 2 23 23 N 1.20887 * 111.46682 * 359.56095 * 22 4 3 24 24 H 1.09000 * 109.47187 * 89.99796 * 1 2 3 25 25 H 1.09003 * 109.46815 * 209.99655 * 1 2 3 26 26 H 1.08996 * 109.47251 * 329.99267 * 1 2 3 27 27 H 1.07997 * 128.07797 * 359.97177 * 3 2 1 28 28 H 0.96991 * 120.00198 * 0.02562 * 7 5 4 29 29 H 1.08998 * 110.72558 * 324.20648 * 10 8 7 30 30 H 1.09005 * 110.87051 * 201.00877 * 10 8 7 31 31 H 1.08997 * 109.88191 * 262.76841 * 11 10 8 32 32 H 1.09009 * 110.00926 * 141.67978 * 11 10 8 33 33 H 0.97003 * 119.99469 * 179.97438 * 16 15 13 34 34 H 1.08998 * 110.36579 * 94.48111 * 21 12 11 35 35 H 1.09002 * 110.36870 * 216.80998 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 0.0006 5 6 4.8870 1.3431 0.0003 6 8 4.8828 2.5590 0.0000 7 7 6.0566 0.6732 0.0005 8 6 7.3228 1.4102 0.0008 9 1 7.2199 2.3590 0.5272 10 6 8.4636 0.5552 0.6130 11 6 8.9099 -0.3256 -0.5729 12 7 8.4948 0.3592 -1.8058 13 6 8.6866 -0.1048 -3.0798 14 1 8.4299 0.5163 -3.9252 15 6 9.2113 -1.3735 -3.2847 16 7 9.3895 -2.1848 -2.2637 17 14 9.6644 -1.9295 -5.0095 18 1 8.5322 -2.6887 -5.5984 19 1 9.9554 -0.7417 -5.8520 20 1 10.8660 -2.7999 -4.9494 21 6 7.8434 1.6312 -1.4437 22 8 3.4540 -0.7359 -0.0046 23 7 2.2848 -1.0432 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 2.0678 2.1746 -0.0004 28 1 6.0599 -0.2967 0.0004 29 1 8.0882 -0.0601 1.4307 30 1 9.2833 1.1880 0.9534 31 1 8.4290 -1.3019 -0.5111 32 1 9.9934 -0.4449 -0.5619 33 1 9.7558 -3.0715 -2.4070 34 1 8.5652 2.4475 -1.4685 35 1 7.0126 1.8375 -2.1185 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010156708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:23 Heat of formation + Delta-G solvation = 52.442862 kcal Electronic energy + Delta-G solvation = -19956.440973 eV Core-core repulsion = 16765.782522 eV Total energy + Delta-G solvation = -3190.658451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -45.02233 -39.63911 -37.32095 -35.01899 -33.84080 -32.32965 -31.53162 -29.23676 -28.84532 -27.40462 -24.78365 -23.80643 -22.87442 -20.45049 -20.13214 -19.80128 -18.32742 -17.79203 -16.89213 -16.17516 -15.98748 -14.73263 -14.66345 -14.40968 -14.01445 -13.78568 -13.58438 -13.35273 -13.23566 -12.89611 -12.51861 -11.99928 -11.84004 -11.48838 -11.05588 -10.85517 -10.80945 -10.47807 -10.20243 -10.15026 -10.09754 -9.97505 -9.75877 -9.71815 -8.87075 -8.60134 -6.83906 -5.72381 -3.07971 0.81705 1.96356 2.66227 3.10096 3.36484 3.39791 3.45628 3.47304 3.96009 4.41976 4.49274 4.89777 4.97958 5.18381 5.23489 5.26114 5.39553 5.44659 5.45431 5.54843 5.69879 5.77842 5.88375 6.10176 6.28411 6.40261 6.43843 6.62178 6.87239 7.41723 7.56698 7.60199 7.77532 8.03672 8.18894 8.23910 9.19125 9.79828 10.44782 11.37237 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.005166 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.477333 B = 5418.923040 C = 6133.539485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.006 3.994 3 C -0.160 4.160 4 C -0.070 4.070 5 C 0.602 3.398 6 O -0.523 6.523 7 N -0.683 5.683 8 C 0.125 3.875 9 H 0.095 0.905 10 C -0.152 4.152 11 C 0.166 3.834 12 N -0.603 5.603 13 C -0.228 4.228 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.920 5.920 17 Si 0.910 3.090 18 H -0.290 1.290 19 H -0.281 1.281 20 H -0.290 1.290 21 C 0.124 3.876 22 O 0.121 5.879 23 N -0.347 5.347 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.182 0.818 28 H 0.412 0.588 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.252 0.748 34 H 0.032 0.968 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.720 5.237 7.678 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.152 4.152 3 C -0.183 4.183 4 C -0.137 4.137 5 C 0.385 3.615 6 O -0.401 6.401 7 N -0.333 5.333 8 C 0.020 3.980 9 H 0.113 0.887 10 C -0.191 4.191 11 C 0.042 3.958 12 N -0.330 5.330 13 C -0.356 4.356 14 H 0.094 0.906 15 C -0.203 4.203 16 N -0.567 5.567 17 Si 0.741 3.259 18 H -0.217 1.217 19 H -0.207 1.207 20 H -0.216 1.216 21 C -0.003 4.003 22 O 0.048 5.952 23 N -0.049 5.049 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.199 0.801 28 H 0.248 0.752 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.833 4.597 7.575 15.595 hybrid contribution 0.246 -0.066 -0.999 1.031 sum -12.587 4.531 6.576 14.906 Atomic orbital electron populations 1.20180 0.85418 1.03924 1.03625 1.23641 0.99309 0.88453 1.03809 1.22811 0.89956 1.01595 1.03894 1.24396 0.97569 0.83915 1.07790 1.16513 0.81142 0.86171 0.77714 1.90838 1.86111 1.11792 1.51317 1.45787 1.04888 1.11259 1.71326 1.22327 0.81680 0.95271 0.98703 0.88690 1.23207 0.96778 0.99351 0.99731 1.21292 0.98292 0.94295 0.81949 1.44474 1.67720 1.18223 1.02536 1.19038 1.36423 0.97796 0.82338 0.90559 1.24777 1.01916 0.96131 0.97483 1.69931 1.50555 1.07814 1.28439 0.86127 0.77792 0.78295 0.83720 1.21684 1.20673 1.21636 1.22012 0.95316 0.90365 0.92586 1.85020 1.21286 1.22217 1.66675 1.73752 0.89338 1.24387 1.17393 0.89955 0.90374 0.89817 0.80074 0.75250 0.91327 0.90722 0.91753 0.95002 0.93773 0.95006 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.47 36.01 0.38 -0.20 16 2 C 0.01 0.07 7.31 -82.17 -0.60 -0.53 16 3 C -0.16 -1.99 10.91 -38.94 -0.43 -2.42 16 4 C -0.07 -1.03 7.29 -36.31 -0.26 -1.30 16 5 C 0.60 9.81 7.82 -12.48 -0.10 9.71 16 6 O -0.52 -9.53 16.55 5.29 0.09 -9.44 16 7 N -0.68 -11.26 5.19 -52.66 -0.27 -11.53 16 8 C 0.13 2.15 3.43 -65.66 -0.23 1.92 16 9 H 0.10 1.52 7.54 -51.93 -0.39 1.13 16 10 C -0.15 -2.58 6.55 -24.90 -0.16 -2.74 16 11 C 0.17 3.78 5.44 -3.07 -0.02 3.77 16 12 N -0.60 -14.86 3.39 -169.94 -0.58 -15.44 16 13 C -0.23 -6.26 10.26 -15.06 -0.15 -6.42 16 14 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 15 C -0.01 -0.19 5.45 -17.43 -0.09 -0.28 16 16 N -0.92 -26.32 10.45 55.49 0.58 -25.74 16 17 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C 0.12 2.56 6.95 -2.41 -0.02 2.54 16 22 O 0.12 1.84 11.04 15.57 0.17 2.01 16 23 N -0.35 -5.10 12.04 33.52 0.40 -4.70 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.41 6.72 8.49 -40.82 -0.35 6.37 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.62 6.88 -51.93 -0.36 1.26 16 32 H 0.03 0.80 7.97 -51.92 -0.41 0.39 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -31.27 303.53 -6.18 -37.45 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.44 Total: 1.78 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.68 Total: 4.05 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.13 Total: -57.41 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.26 Total: -7.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.27 -6.18 -37.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010156708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.894 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds