Wall clock time and date at job start Mon Mar 30 2020 00:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34262 * 126.52483 * 2 1 4 4 C 1.34042 * 108.22907 * 180.23054 * 3 2 1 5 5 N 1.29941 * 109.24221 * 359.76866 * 4 3 2 6 6 C 1.36064 * 108.47662 * 359.97438 * 5 4 3 7 7 C 1.47419 * 126.44572 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99559 * 180.02562 * 7 6 5 9 9 N 1.34767 * 120.00284 * 0.02637 * 7 6 5 10 10 C 1.46502 * 119.99982 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47224 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.78027 * 56.27136 * 11 10 9 13 13 C 1.53489 * 113.47121 * 187.05993 * 11 10 9 14 14 C 1.53236 * 83.43357 * 140.67602 * 13 11 10 15 15 N 1.47072 * 113.46402 * 285.49801 * 11 10 9 16 16 C 1.36931 * 136.06174 * 38.06047 * 15 11 10 17 17 H 1.08002 * 120.00098 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 11 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00576 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00326 * 20 18 16 23 23 H 1.48498 * 109.47210 * 150.00037 * 20 18 16 24 24 H 1.09001 * 109.46889 * 270.16054 * 1 2 3 25 25 H 1.09005 * 109.47391 * 30.16037 * 1 2 3 26 26 H 1.09002 * 109.46897 * 150.16238 * 1 2 3 27 27 H 1.07998 * 125.38095 * 179.72904 * 4 3 2 28 28 H 0.97000 * 120.00177 * 0.02562 * 9 7 6 29 29 H 1.08999 * 109.47147 * 60.00057 * 10 9 7 30 30 H 1.08999 * 109.47011 * 299.99948 * 10 9 7 31 31 H 1.09001 * 114.21043 * 254.43431 * 13 11 10 32 32 H 1.09004 * 114.20551 * 27.06151 * 13 11 10 33 33 H 1.09005 * 113.38689 * 219.29895 * 14 13 11 34 34 H 1.08998 * 113.47153 * 88.92769 * 14 13 11 35 35 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0051 5 7 3.6002 -0.6411 -0.0034 6 6 2.3170 -1.0936 0.0037 7 6 1.8855 -2.5032 0.0073 8 8 0.7003 -2.7762 0.0131 9 7 2.8041 -3.4892 0.0042 10 6 2.3752 -4.8900 0.0084 11 6 3.6051 -5.8000 0.0042 12 1 4.2801 -5.6012 0.8366 13 6 3.2647 -7.2871 -0.1649 14 6 4.5152 -7.2918 -1.0506 15 7 4.2844 -5.8606 -1.2989 16 6 4.5706 -4.9756 -2.3037 17 1 4.2634 -3.9437 -2.2182 18 6 5.2546 -5.4047 -3.4328 19 7 5.6276 -6.6626 -3.5377 20 14 5.6444 -4.1975 -4.8040 21 1 4.5309 -4.1878 -5.7864 22 1 5.8123 -2.8371 -4.2326 23 1 6.8998 -4.6078 -5.4827 24 1 -0.3633 0.0029 1.0277 25 1 -0.3634 0.8886 -0.5163 26 1 -0.3633 -0.8915 -0.5113 27 1 4.4488 1.2979 -0.0106 28 1 3.7494 -3.2714 -0.0001 29 1 1.7731 -5.0883 -0.8783 30 1 1.7820 -5.0856 0.9016 31 1 3.3594 -7.8741 0.7487 32 1 2.3355 -7.4745 -0.7030 33 1 4.4112 -7.9093 -1.9428 34 1 5.4350 -7.4943 -0.5020 35 1 6.1052 -6.9626 -4.3269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038089708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:06 Heat of formation + Delta-G solvation = 43.601055 kcal Electronic energy + Delta-G solvation = -19988.261708 eV Core-core repulsion = 16797.219847 eV Total energy + Delta-G solvation = -3191.041861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.44147 -39.28048 -38.03396 -34.85294 -34.04617 -32.39795 -32.17870 -28.49405 -27.90131 -26.84423 -23.84210 -23.44489 -22.27996 -21.36483 -20.28080 -19.24891 -18.10345 -16.92341 -16.65259 -15.97206 -15.72872 -15.22366 -14.70871 -14.45951 -14.18916 -13.81672 -13.47109 -13.18047 -13.13809 -12.84455 -12.49637 -11.93349 -11.52682 -11.31903 -11.09103 -10.95919 -10.76522 -10.75822 -10.54147 -10.04590 -9.81308 -9.76896 -9.22254 -8.98433 -8.78632 -8.50188 -6.87350 -5.74095 -3.06303 1.11268 2.10524 2.52534 3.40255 3.44432 3.46271 3.47464 3.56522 4.08280 4.46391 4.60709 4.92537 5.11321 5.23789 5.35640 5.38520 5.42918 5.58564 5.74168 5.78218 5.93810 5.94942 6.05825 6.13428 6.32882 6.42457 6.61735 6.73180 6.88365 7.25447 7.41323 7.42021 7.60669 7.95011 8.00602 8.50282 9.06688 9.73275 10.65310 11.43230 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.006218 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.902941 B = 4502.057013 C = 5567.881354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.034 3.966 3 O -0.204 6.204 4 C 0.170 3.830 5 N -0.457 5.457 6 C -0.070 4.070 7 C 0.596 3.404 8 O -0.548 6.548 9 N -0.693 5.693 10 C 0.121 3.879 11 C 0.127 3.873 12 H 0.049 0.951 13 C -0.160 4.160 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.211 4.211 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.290 1.290 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.113 0.887 27 H 0.254 0.746 28 H 0.412 0.588 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.719 11.433 9.244 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.022 4.022 3 O -0.090 6.090 4 C -0.059 4.059 5 N -0.185 5.185 6 C -0.190 4.190 7 C 0.381 3.619 8 O -0.428 6.428 9 N -0.342 5.342 10 C -0.004 4.004 11 C 0.019 3.981 12 H 0.066 0.934 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.338 4.338 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.131 0.869 27 H 0.270 0.730 28 H 0.248 0.752 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.841 10.948 8.905 15.682 hybrid contribution 0.642 1.309 -0.807 1.666 sum -6.199 12.257 8.098 15.945 Atomic orbital electron populations 1.20567 0.82662 1.05348 1.04459 1.23723 0.95161 0.83382 0.99927 1.84349 1.18637 1.36345 1.69713 1.28003 0.85178 0.91317 1.01385 1.70798 1.21861 1.10061 1.15828 1.21634 0.88709 0.95922 1.12770 1.16710 0.85611 0.82576 0.76979 1.90738 1.16306 1.83352 1.52369 1.45796 1.10390 1.06163 1.71805 1.21890 0.98142 0.78876 1.01453 1.22429 0.91755 0.93110 0.90827 0.93364 1.23614 1.01044 0.95322 0.99946 1.21973 0.91991 0.87242 0.96195 1.45671 1.65806 1.07126 1.14070 1.18883 1.30409 0.90592 0.93958 0.90137 1.24756 1.00821 0.96470 0.98347 1.69834 1.43857 1.14064 1.28918 0.86178 0.77543 0.80185 0.82267 1.21635 1.20675 1.21651 0.89206 0.90350 0.86882 0.73019 0.75183 0.90830 0.92014 0.92297 0.90195 0.91004 0.95710 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 9.87 36.00 0.36 -0.42 16 2 C 0.03 0.47 7.44 -35.08 -0.26 0.21 16 3 O -0.20 -2.44 10.73 6.52 0.07 -2.37 16 4 C 0.17 1.91 13.19 51.96 0.69 2.60 16 5 N -0.46 -7.09 11.06 -11.49 -0.13 -7.21 16 6 C -0.07 -1.15 6.99 -83.02 -0.58 -1.73 16 7 C 0.60 10.99 7.81 -12.53 -0.10 10.89 16 8 O -0.55 -10.67 14.81 5.26 0.08 -10.59 16 9 N -0.69 -13.02 5.33 -61.38 -0.33 -13.34 16 10 C 0.12 2.26 5.52 -4.04 -0.02 2.23 16 11 C 0.13 2.51 4.11 -72.40 -0.30 2.21 16 12 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.16 -2.95 8.01 -26.36 -0.21 -3.16 16 14 C 0.15 3.52 7.37 -8.64 -0.06 3.46 16 15 N -0.60 -15.01 3.65 -177.15 -0.65 -15.66 16 16 C -0.21 -5.84 10.55 -15.06 -0.16 -6.00 16 17 H 0.08 2.19 7.51 -52.49 -0.39 1.80 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.43 11.51 55.49 0.64 -26.79 16 20 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.11 1.39 6.49 -51.93 -0.34 1.05 16 27 H 0.25 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.41 7.95 8.10 -40.82 -0.33 7.62 16 29 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 33 H 0.07 1.86 7.14 -51.93 -0.37 1.49 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -33.58 305.06 -5.86 -39.44 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -4.37 Total: 4.35 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -0.75 Total: 9.97 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.46 Total: -63.01 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.15 Total: -12.96 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.58 -5.86 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038089708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.046 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds