Wall clock time and date at job start Mon Mar 30 2020 00:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34262 * 126.52483 * 2 1 4 4 C 1.34042 * 108.22907 * 180.23054 * 3 2 1 5 5 N 1.29941 * 109.24221 * 359.76866 * 4 3 2 6 6 C 1.36064 * 108.47662 * 359.97438 * 5 4 3 7 7 C 1.47419 * 126.44572 * 179.97438 * 6 5 4 8 8 O 1.21621 * 119.99559 * 180.02562 * 7 6 5 9 9 N 1.34767 * 120.00284 * 0.02637 * 7 6 5 10 10 C 1.46502 * 119.99982 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47224 * 180.02562 * 10 9 7 12 12 H 1.08998 * 112.78027 * 56.27136 * 11 10 9 13 13 C 1.53489 * 113.47121 * 187.05993 * 11 10 9 14 14 C 1.53236 * 83.43357 * 140.67602 * 13 11 10 15 15 N 1.47072 * 113.46402 * 285.49801 * 11 10 9 16 16 C 1.36931 * 136.06174 * 38.06047 * 15 11 10 17 17 H 1.08002 * 120.00098 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 11 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00576 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00326 * 20 18 16 23 23 H 1.48498 * 109.47210 * 150.00037 * 20 18 16 24 24 H 1.09001 * 109.46889 * 270.16054 * 1 2 3 25 25 H 1.09005 * 109.47391 * 30.16037 * 1 2 3 26 26 H 1.09002 * 109.46897 * 150.16238 * 1 2 3 27 27 H 1.07998 * 125.38095 * 179.72904 * 4 3 2 28 28 H 0.97000 * 120.00177 * 0.02562 * 9 7 6 29 29 H 1.08999 * 109.47147 * 60.00057 * 10 9 7 30 30 H 1.08999 * 109.47011 * 299.99948 * 10 9 7 31 31 H 1.09001 * 114.21043 * 254.43431 * 13 11 10 32 32 H 1.09004 * 114.20551 * 27.06151 * 13 11 10 33 33 H 1.09005 * 113.38689 * 219.29895 * 14 13 11 34 34 H 1.08998 * 113.47153 * 88.92769 * 14 13 11 35 35 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0051 5 7 3.6002 -0.6411 -0.0034 6 6 2.3170 -1.0936 0.0037 7 6 1.8855 -2.5032 0.0073 8 8 0.7003 -2.7762 0.0131 9 7 2.8041 -3.4892 0.0042 10 6 2.3752 -4.8900 0.0084 11 6 3.6051 -5.8000 0.0042 12 1 4.2801 -5.6012 0.8366 13 6 3.2647 -7.2871 -0.1649 14 6 4.5152 -7.2918 -1.0506 15 7 4.2844 -5.8606 -1.2989 16 6 4.5706 -4.9756 -2.3037 17 1 4.2634 -3.9437 -2.2182 18 6 5.2546 -5.4047 -3.4328 19 7 5.6276 -6.6626 -3.5377 20 14 5.6444 -4.1975 -4.8040 21 1 4.5309 -4.1878 -5.7864 22 1 5.8123 -2.8371 -4.2326 23 1 6.8998 -4.6078 -5.4827 24 1 -0.3633 0.0029 1.0277 25 1 -0.3634 0.8886 -0.5163 26 1 -0.3633 -0.8915 -0.5113 27 1 4.4488 1.2979 -0.0106 28 1 3.7494 -3.2714 -0.0001 29 1 1.7731 -5.0883 -0.8783 30 1 1.7820 -5.0856 0.9016 31 1 3.3594 -7.8741 0.7487 32 1 2.3355 -7.4745 -0.7030 33 1 4.4112 -7.9093 -1.9428 34 1 5.4350 -7.4943 -0.5020 35 1 6.1052 -6.9626 -4.3269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038089708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:05 Heat of formation + Delta-G solvation = 16.930147 kcal Electronic energy + Delta-G solvation = -19989.418246 eV Core-core repulsion = 16797.219847 eV Total energy + Delta-G solvation = -3192.198398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.43844 -40.75856 -39.68876 -35.95470 -35.48581 -34.24901 -33.37305 -30.08265 -29.67986 -27.98754 -25.40610 -25.05391 -23.61413 -22.59587 -21.60642 -20.96549 -19.42583 -18.42528 -17.92877 -17.21064 -17.08700 -17.06684 -16.14101 -15.78877 -15.61453 -15.50702 -14.84319 -14.75292 -14.30878 -13.94194 -13.65291 -13.37952 -13.34126 -12.98168 -12.73916 -12.63371 -12.41788 -12.31502 -11.87933 -11.81877 -11.65208 -11.34571 -10.94191 -10.84223 -10.19154 -9.83667 -8.89921 -7.88916 -5.20138 0.04556 1.05888 1.40848 1.42063 1.50342 1.58076 2.13723 2.26308 2.45819 3.11808 3.33005 3.43997 3.63368 3.78145 3.94395 4.12953 4.23607 4.33321 4.41939 4.58995 4.61985 4.68801 4.86864 4.88266 5.05642 5.07168 5.10917 5.17591 5.32071 5.40798 5.58330 5.73842 5.96739 6.31591 6.60267 6.93840 7.08547 7.62800 8.62665 9.28599 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.006218 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.902941 B = 4502.057013 C = 5567.881354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.047 3.953 3 O -0.197 6.197 4 C 0.194 3.806 5 N -0.502 5.502 6 C -0.111 4.111 7 C 0.592 3.408 8 O -0.566 6.566 9 N -0.699 5.699 10 C 0.130 3.870 11 C 0.130 3.870 12 H 0.065 0.935 13 C -0.130 4.130 14 C 0.143 3.857 15 N -0.630 5.630 16 C -0.206 4.206 17 H 0.079 0.921 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.967 3.033 21 H -0.291 1.291 22 H -0.272 1.272 23 H -0.292 1.292 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.304 0.696 28 H 0.408 0.592 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.022 0.978 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 13.438 10.499 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.010 4.010 3 O -0.083 6.083 4 C -0.035 4.035 5 N -0.230 5.230 6 C -0.230 4.230 7 C 0.379 3.621 8 O -0.447 6.447 9 N -0.347 5.347 10 C 0.006 3.994 11 C 0.024 3.976 12 H 0.083 0.917 13 C -0.169 4.169 14 C 0.017 3.983 15 N -0.356 5.356 16 C -0.334 4.334 17 H 0.097 0.903 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.796 3.204 21 H -0.219 1.219 22 H -0.197 1.197 23 H -0.219 1.219 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.112 0.888 27 H 0.319 0.681 28 H 0.244 0.756 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.040 0.960 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.442 12.956 10.196 18.089 hybrid contribution 0.809 0.767 -1.117 1.578 sum -6.633 13.723 9.079 17.741 Atomic orbital electron populations 1.20666 0.80820 1.05746 1.05684 1.24138 0.96227 0.82963 0.97716 1.84401 1.18886 1.35533 1.69516 1.29130 0.85928 0.90689 0.97702 1.70745 1.21790 1.12213 1.18251 1.21461 0.89994 0.95372 1.16142 1.17036 0.85295 0.83548 0.76211 1.90712 1.16828 1.83970 1.53210 1.45816 1.10276 1.06290 1.72320 1.21717 0.97350 0.79017 1.01360 1.22586 0.91750 0.94445 0.88808 0.91748 1.23423 0.98448 0.94637 1.00391 1.22004 0.94323 0.86072 0.95871 1.45993 1.66251 1.07677 1.15661 1.19129 1.28690 0.90957 0.94624 0.90322 1.25493 1.01945 0.98000 1.00739 1.70005 1.45346 1.15579 1.29270 0.85245 0.76874 0.78684 0.79621 1.21852 1.19723 1.21864 0.87439 0.87473 0.88827 0.68106 0.75628 0.93382 0.89553 0.87972 0.89952 0.94453 0.96002 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 9.87 71.23 0.70 -0.69 16 2 C 0.05 1.19 7.44 25.18 0.19 1.37 16 3 O -0.20 -4.13 10.73 0.40 0.00 -4.13 16 4 C 0.19 3.80 13.19 130.52 1.72 5.52 16 5 N -0.50 -14.88 11.06 -305.16 -3.37 -18.26 16 6 C -0.11 -3.57 6.99 40.41 0.28 -3.28 16 7 C 0.59 21.79 7.81 86.66 0.68 22.46 16 8 O -0.57 -22.01 14.81 -4.10 -0.06 -22.07 16 9 N -0.70 -26.13 5.33 -466.37 -2.49 -28.62 16 10 C 0.13 4.75 5.52 86.38 0.48 5.23 16 11 C 0.13 5.01 4.11 41.79 0.17 5.18 16 12 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.13 -4.55 8.01 30.84 0.25 -4.30 16 14 C 0.14 6.68 7.37 83.09 0.61 7.29 16 15 N -0.63 -31.63 3.65 -714.39 -2.61 -34.25 16 16 C -0.21 -11.53 10.55 84.03 0.89 -10.64 16 17 H 0.08 4.34 7.51 -2.91 -0.02 4.32 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.95 -58.40 11.51 21.65 0.25 -58.15 16 20 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 24 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.09 2.22 6.49 -2.39 -0.02 2.20 16 27 H 0.30 2.13 8.06 -2.91 -0.02 2.10 16 28 H 0.41 15.80 8.10 -92.71 -0.75 15.05 16 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.10 2.74 8.14 -2.39 -0.02 2.73 16 32 H 0.08 2.86 8.12 -2.38 -0.02 2.84 16 33 H 0.04 1.98 7.14 -2.38 -0.02 1.97 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 Total: -1.00 -74.89 305.06 0.55 -74.34 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.37 Total: 17.17 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 6.43 Total: 24.60 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -8.22 Total: -139.27 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.06 Total: -26.20 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -74.89 0.55 -74.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038089708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.269 kcal (2) G-P(sol) polarization free energy of solvation -74.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds