Wall clock time and date at job start Mon Mar 30 2020 00:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47036 * 2 1 4 4 C 1.46499 * 119.99889 * 269.99757 * 3 2 1 5 5 C 1.50706 * 109.47094 * 270.00220 * 4 3 2 6 6 H 1.08004 * 119.99892 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99994 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99696 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00212 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46931 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47435 * 119.99779 * 9 7 5 12 12 H 1.48500 * 109.47304 * 240.00350 * 9 7 5 13 13 C 1.38572 * 119.99916 * 89.99946 * 3 2 1 14 14 C 1.39839 * 120.50176 * 4.99667 * 13 3 2 15 15 C 1.38304 * 118.44315 * 179.74826 * 14 13 3 16 16 N 1.32327 * 119.26741 * 0.25226 * 15 14 13 17 17 C 1.32428 * 120.96286 * 0.02562 * 16 15 14 18 18 C 1.48467 * 119.15072 * 179.97438 * 17 16 15 19 19 O 1.21377 * 120.00012 * 179.97438 * 18 17 16 20 20 O 1.34637 * 120.00166 * 359.97438 * 18 17 16 21 21 C 1.45199 * 117.00160 * 179.97438 * 20 18 17 22 22 N 1.32486 * 121.69651 * 359.97156 * 17 16 15 23 23 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47150 * 300.00134 * 1 2 3 25 25 H 1.08998 * 109.46833 * 60.00113 * 1 2 3 26 26 H 1.08995 * 109.47321 * 239.99585 * 2 1 3 27 27 H 1.08998 * 109.46833 * 119.99887 * 2 1 3 28 28 H 1.08996 * 109.47263 * 30.00394 * 4 3 2 29 29 H 1.08998 * 109.47133 * 150.00071 * 4 3 2 30 30 H 0.97012 * 119.99464 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.78210 * 0.02936 * 14 13 3 32 32 H 1.07996 * 120.36534 * 180.23096 * 15 14 13 33 33 H 1.09000 * 109.47170 * 180.02562 * 21 20 18 34 34 H 1.09001 * 109.46764 * 299.99992 * 21 20 18 35 35 H 1.09001 * 109.46973 * 59.99919 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3430 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1264 -3.6175 9 14 5.9139 2.0974 -3.4163 10 1 6.6015 1.2422 -2.4157 11 1 5.9219 1.4188 -4.7372 12 1 6.6212 3.3987 -3.5239 13 6 2.2493 2.0345 1.2001 14 6 2.1200 1.3540 2.4149 15 6 2.3657 2.0460 3.5869 16 7 2.7082 3.3227 3.5247 17 6 2.8174 3.9428 2.3597 18 6 3.2037 5.3762 2.3369 19 8 3.3088 5.9596 1.2777 20 8 3.4373 6.0289 3.4910 21 6 3.8113 7.4285 3.3928 22 7 2.5910 3.3171 1.2141 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5818 1.6877 -2.0284 29 1 2.0956 3.1410 -1.1384 30 1 3.6758 3.5175 -4.4432 31 1 1.8394 0.3113 2.4373 32 1 2.2787 1.5500 4.5423 33 1 3.9706 7.8330 4.3923 34 1 4.7304 7.5192 2.8138 35 1 3.0141 7.9837 2.8985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090736707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:39 Heat of formation + Delta-G solvation = -17.042338 kcal Electronic energy + Delta-G solvation = -19987.945550 eV Core-core repulsion = 16794.273994 eV Total energy + Delta-G solvation = -3193.671556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79281 -39.68775 -36.94817 -36.19410 -32.99772 -32.86686 -31.50209 -30.03624 -27.97228 -26.82205 -25.06736 -23.74077 -23.05738 -21.52851 -20.39457 -17.87840 -17.38262 -16.62008 -16.33939 -16.22271 -16.13169 -14.88983 -14.81057 -14.47644 -14.13860 -13.87852 -13.34826 -13.27294 -12.89475 -12.72437 -12.10984 -12.00413 -11.85933 -11.26310 -11.05557 -10.95736 -10.69148 -10.67013 -10.61597 -10.54413 -10.20417 -9.99195 -9.73404 -9.37682 -8.71491 -8.44567 -7.24866 -6.05191 -4.11398 0.86525 1.80431 2.49809 2.72946 3.28389 3.36516 3.39029 3.58947 4.33078 4.36813 4.43051 4.82002 5.04582 5.19217 5.24797 5.27225 5.28754 5.37638 5.49714 5.51615 5.61249 5.70674 5.82556 5.95694 6.14199 6.37729 6.41118 6.48017 6.89644 7.30975 7.45373 7.73647 7.85807 8.02141 8.07197 8.18875 8.63799 8.92151 9.53279 11.01725 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.013752 B = 0.007429 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.611737 B = 3767.928921 C = 5233.102509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.566 5.566 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.447 3.553 14 C -0.287 4.287 15 C 0.164 3.836 16 N -0.536 5.536 17 C 0.337 3.663 18 C 0.535 3.465 19 O -0.462 6.462 20 O -0.337 6.337 21 C 0.035 3.965 22 N -0.503 5.503 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.054 0.946 30 H 0.263 0.737 31 H 0.143 0.857 32 H 0.166 0.834 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -1.971 13.527 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 N -0.273 5.273 4 C 0.127 3.873 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.201 3.799 14 C -0.317 4.317 15 C 0.002 3.998 16 N -0.260 5.260 17 C 0.065 3.935 18 C 0.373 3.627 19 O -0.343 6.343 20 O -0.252 6.252 21 C -0.059 4.059 22 N -0.230 5.230 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.183 0.817 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.481 -0.799 12.725 13.216 hybrid contribution 0.830 -0.877 -0.543 1.324 sum -2.651 -1.676 12.181 12.579 Atomic orbital electron populations 1.22217 0.96395 1.01636 1.02545 1.21486 0.93652 0.82495 1.03100 1.47338 1.63195 1.12343 1.04417 1.19480 0.96401 0.94122 0.77269 1.21402 0.96689 1.32199 1.06408 0.92583 1.24901 0.97767 0.94799 0.96361 1.69940 1.35553 1.33098 1.14291 0.86469 0.84718 0.78087 0.78300 1.19899 1.20915 1.20805 1.18449 0.87047 0.87206 0.87152 1.22401 1.13268 1.02814 0.93245 1.22736 0.90086 0.89058 0.97935 1.68285 1.18921 1.10986 1.27857 1.20805 0.95756 0.92252 0.84666 1.20119 0.74927 0.85601 0.82040 1.90908 1.44818 1.66987 1.31560 1.86627 1.79447 1.25843 1.33296 1.23316 1.00960 0.77970 1.03643 1.67685 1.17341 1.08949 1.28978 0.91856 0.92876 0.91960 0.89336 0.91293 0.94880 0.92763 0.92706 0.83904 0.81714 0.87935 0.91756 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.12 1.80 6.00 -4.04 -0.02 1.78 16 3 N -0.57 -11.68 2.56 -175.02 -0.45 -12.13 16 4 C 0.25 6.31 5.24 -5.19 -0.03 6.28 16 5 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.45 9.06 7.39 -154.88 -1.14 7.92 16 14 C -0.29 -4.45 9.34 -38.96 -0.36 -4.81 16 15 C 0.16 2.37 11.29 -17.31 -0.20 2.17 16 16 N -0.54 -9.50 10.15 -11.22 -0.11 -9.61 16 17 C 0.34 6.91 7.59 -157.11 -1.19 5.72 16 18 C 0.53 10.61 7.99 34.95 0.28 10.89 16 19 O -0.46 -10.44 16.65 -19.17 -0.32 -10.76 16 20 O -0.34 -5.46 10.36 -40.32 -0.42 -5.87 16 21 C 0.04 0.41 10.56 101.05 1.07 1.48 16 22 N -0.50 -11.54 8.92 -10.37 -0.09 -11.64 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 27 H 0.07 0.89 6.04 -51.93 -0.31 0.57 16 28 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.05 1.58 7.33 -51.93 -0.38 1.20 16 30 H 0.26 7.42 8.31 -40.81 -0.34 7.08 16 31 H 0.14 1.73 6.16 -52.49 -0.32 1.40 16 32 H 0.17 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -34.07 311.96 -6.98 -41.05 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.36 Total: -3.18 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: -1.64 Total: 16.20 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 0.08 Total: -59.18 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.74 Total: -16.64 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.07 -6.98 -41.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090736707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.003 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds