Wall clock time and date at job start Mon Mar 30 2020 00:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47036 * 2 1 4 4 C 1.46499 * 119.99889 * 269.99757 * 3 2 1 5 5 C 1.50706 * 109.47094 * 270.00220 * 4 3 2 6 6 H 1.08004 * 119.99892 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99994 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99696 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00212 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46931 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47435 * 119.99779 * 9 7 5 12 12 H 1.48500 * 109.47304 * 240.00350 * 9 7 5 13 13 C 1.38572 * 119.99916 * 89.99946 * 3 2 1 14 14 C 1.39839 * 120.50176 * 4.99667 * 13 3 2 15 15 C 1.38304 * 118.44315 * 179.74826 * 14 13 3 16 16 N 1.32327 * 119.26741 * 0.25226 * 15 14 13 17 17 C 1.32428 * 120.96286 * 0.02562 * 16 15 14 18 18 C 1.48467 * 119.15072 * 179.97438 * 17 16 15 19 19 O 1.21377 * 120.00012 * 179.97438 * 18 17 16 20 20 O 1.34637 * 120.00166 * 359.97438 * 18 17 16 21 21 C 1.45199 * 117.00160 * 179.97438 * 20 18 17 22 22 N 1.32486 * 121.69651 * 359.97156 * 17 16 15 23 23 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47150 * 300.00134 * 1 2 3 25 25 H 1.08998 * 109.46833 * 60.00113 * 1 2 3 26 26 H 1.08995 * 109.47321 * 239.99585 * 2 1 3 27 27 H 1.08998 * 109.46833 * 119.99887 * 2 1 3 28 28 H 1.08996 * 109.47263 * 30.00394 * 4 3 2 29 29 H 1.08998 * 109.47133 * 150.00071 * 4 3 2 30 30 H 0.97012 * 119.99464 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.78210 * 0.02936 * 14 13 3 32 32 H 1.07996 * 120.36534 * 180.23096 * 15 14 13 33 33 H 1.09000 * 109.47170 * 180.02562 * 21 20 18 34 34 H 1.09001 * 109.46764 * 299.99992 * 21 20 18 35 35 H 1.09001 * 109.46973 * 59.99919 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3430 1.2308 -1.0957 7 6 4.1495 2.3904 -2.8774 8 7 3.3495 3.1264 -3.6175 9 14 5.9139 2.0974 -3.4163 10 1 6.6015 1.2422 -2.4157 11 1 5.9219 1.4188 -4.7372 12 1 6.6212 3.3987 -3.5239 13 6 2.2493 2.0345 1.2001 14 6 2.1200 1.3540 2.4149 15 6 2.3657 2.0460 3.5869 16 7 2.7082 3.3227 3.5247 17 6 2.8174 3.9428 2.3597 18 6 3.2037 5.3762 2.3369 19 8 3.3088 5.9596 1.2777 20 8 3.4373 6.0289 3.4910 21 6 3.8113 7.4285 3.3928 22 7 2.5910 3.3171 1.2141 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.5818 1.6877 -2.0284 29 1 2.0956 3.1410 -1.1384 30 1 3.6758 3.5175 -4.4432 31 1 1.8394 0.3113 2.4373 32 1 2.2787 1.5500 4.5423 33 1 3.9706 7.8330 4.3923 34 1 4.7304 7.5192 2.8138 35 1 3.0141 7.9837 2.8985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090736707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:38 Heat of formation + Delta-G solvation = -39.310158 kcal Electronic energy + Delta-G solvation = -19988.911155 eV Core-core repulsion = 16794.273994 eV Total energy + Delta-G solvation = -3194.637161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.22124 -41.11135 -38.42485 -37.62755 -34.97309 -34.38988 -32.84219 -31.60567 -29.20839 -28.53889 -26.42290 -25.41919 -24.49212 -23.01484 -21.81928 -19.34963 -18.81830 -18.60520 -17.90559 -17.63584 -17.47324 -16.64509 -16.22917 -15.98417 -15.53283 -15.17977 -14.81408 -14.52837 -14.32871 -14.21683 -13.75136 -13.37179 -13.07752 -13.06636 -12.73882 -12.58882 -12.30291 -12.23997 -12.20529 -11.87112 -11.86675 -11.57705 -11.42833 -10.92831 -10.65618 -10.16599 -8.83580 -8.18635 -6.37247 -0.56198 0.46280 1.17902 1.26209 1.32030 1.35323 1.45747 2.11938 2.37183 2.93024 3.07066 3.08995 3.50693 3.76484 4.06155 4.13331 4.29051 4.31882 4.35913 4.38337 4.54827 4.64301 4.68756 4.81794 4.99675 5.03739 5.05873 5.19031 5.35564 5.40023 5.62480 5.82935 6.04680 6.26425 6.44229 6.59061 6.74704 7.21971 7.32902 8.83750 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.013752 B = 0.007429 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.611737 B = 3767.928921 C = 5233.102509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.111 3.889 3 N -0.581 5.581 4 C 0.268 3.732 5 C -0.535 4.535 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.286 1.286 13 C 0.417 3.583 14 C -0.260 4.260 15 C 0.169 3.831 16 N -0.530 5.530 17 C 0.312 3.688 18 C 0.536 3.464 19 O -0.506 6.506 20 O -0.332 6.332 21 C 0.026 3.974 22 N -0.559 5.559 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.018 0.982 29 H 0.008 0.992 30 H 0.266 0.734 31 H 0.187 0.813 32 H 0.226 0.774 33 H 0.148 0.852 34 H 0.061 0.939 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 -4.037 16.295 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.010 4.010 3 N -0.290 5.290 4 C 0.147 3.853 5 C -0.574 4.574 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.192 1.192 12 H -0.212 1.212 13 C 0.173 3.827 14 C -0.289 4.289 15 C 0.009 3.991 16 N -0.254 5.254 17 C 0.042 3.958 18 C 0.376 3.624 19 O -0.392 6.392 20 O -0.246 6.246 21 C -0.067 4.067 22 N -0.287 5.287 23 H 0.118 0.882 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.124 0.876 28 H 0.036 0.964 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.204 0.796 32 H 0.242 0.758 33 H 0.165 0.835 34 H 0.080 0.920 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.128 -2.890 15.565 16.138 hybrid contribution 0.678 -0.210 -1.228 1.419 sum -2.449 -3.100 14.338 14.872 Atomic orbital electron populations 1.22146 0.94604 1.03575 1.01471 1.21784 0.95064 0.79917 1.04267 1.47196 1.64895 1.13967 1.02925 1.18764 0.94961 0.91979 0.79606 1.21675 0.97773 1.31671 1.06286 0.93131 1.25801 1.02033 0.94580 0.96602 1.70063 1.37564 1.34209 1.14821 0.85448 0.79469 0.77835 0.78539 1.19135 1.19240 1.21177 1.18960 0.88133 0.87065 0.88509 1.22826 1.10488 1.04400 0.91189 1.23746 0.87725 0.87729 0.99937 1.68371 1.18192 1.12613 1.26209 1.20893 0.97184 0.92720 0.85033 1.20323 0.73959 0.85816 0.82270 1.90871 1.47148 1.67966 1.33175 1.86616 1.78666 1.27949 1.31376 1.23752 1.00827 0.75647 1.06478 1.67551 1.19072 1.11079 1.31028 0.88249 0.92385 0.94612 0.90549 0.87647 0.96415 0.97433 0.92550 0.79591 0.75799 0.83462 0.91984 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.14 16 2 C 0.11 3.27 6.00 86.38 0.52 3.79 16 3 N -0.58 -24.24 2.56 -707.64 -1.81 -26.05 16 4 C 0.27 14.52 5.24 85.64 0.45 14.97 16 5 C -0.54 -31.04 9.39 25.60 0.24 -30.80 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 9 Si 0.96 46.09 29.54 68.60 2.03 48.12 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 C 0.42 16.76 7.39 133.28 0.98 17.75 16 14 C -0.26 -7.11 9.34 22.67 0.21 -6.90 16 15 C 0.17 4.17 11.29 84.63 0.96 5.13 16 16 N -0.53 -17.66 10.15 -189.41 -1.92 -19.58 16 17 C 0.31 12.96 7.59 137.66 1.05 14.01 16 18 C 0.54 21.96 7.99 70.55 0.56 22.52 16 19 O -0.51 -24.29 16.65 20.23 0.34 -23.96 16 20 O -0.33 -10.62 10.36 -55.45 -0.57 -11.20 16 21 C 0.03 0.58 10.56 113.37 1.20 1.77 16 22 N -0.56 -26.53 8.92 -186.71 -1.67 -28.20 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 27 H 0.11 2.27 6.04 -2.39 -0.01 2.26 16 28 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 29 H 0.01 0.47 7.33 -2.39 -0.02 0.46 16 30 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 31 H 0.19 3.37 6.16 -2.91 -0.02 3.35 16 32 H 0.23 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -80.53 311.96 5.14 -75.39 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.10 Total: 2.58 kcal Atomic # 6 Polarization: 32.71 SS G_CDS: 7.36 Total: 40.07 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -5.12 Total: -131.01 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.24 Total: -35.15 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -80.53 5.14 -75.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090736707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.083 kcal (2) G-P(sol) polarization free energy of solvation -80.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds