Wall clock time and date at job start Mon Mar 30 2020 00:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47544 * 2 1 4 4 N 1.28393 * 119.09855 * 270.23718 * 3 2 1 5 5 C 1.31401 * 122.26274 * 180.29658 * 4 3 2 6 6 C 1.47890 * 119.89042 * 179.74415 * 5 4 3 7 7 O 1.21558 * 119.99608 * 186.75552 * 6 5 4 8 8 N 1.34775 * 120.00146 * 6.76175 * 6 5 4 9 9 C 1.46496 * 119.99996 * 357.43567 * 8 6 5 10 10 C 1.46501 * 119.99990 * 177.16169 * 8 6 5 11 11 C 1.50702 * 109.47019 * 89.99786 * 10 8 6 12 12 H 1.07999 * 120.00153 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99987 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99867 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00277 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47075 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47339 * 119.99502 * 15 13 11 18 18 H 1.48495 * 109.47167 * 239.99820 * 15 13 11 19 19 C 1.41576 * 120.21373 * 359.46571 * 5 4 3 20 20 C 1.36331 * 118.23876 * 0.25762 * 19 5 4 21 21 C 1.34608 * 119.10115 * 89.99845 * 3 2 1 22 22 O 1.21973 * 120.22530 * 359.96057 * 21 3 2 23 23 H 1.09001 * 109.47302 * 59.99710 * 1 2 3 24 24 H 1.08995 * 109.47482 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47095 * 299.99884 * 1 2 3 26 26 H 1.09001 * 109.47146 * 239.99660 * 2 1 3 27 27 H 1.09001 * 109.47302 * 120.00290 * 2 1 3 28 28 H 1.09006 * 109.47145 * 275.82611 * 9 8 6 29 29 H 1.08997 * 109.47105 * 35.81977 * 9 8 6 30 30 H 1.08996 * 109.47215 * 155.82529 * 9 8 6 31 31 H 1.08996 * 109.47117 * 209.99570 * 10 8 6 32 32 H 1.09002 * 109.47213 * 329.99575 * 10 8 6 33 33 H 0.96996 * 120.00082 * 180.02562 * 14 13 11 34 34 H 1.08005 * 120.87902 * 180.27294 * 19 5 4 35 35 H 1.07993 * 121.03270 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2222 1.9714 -1.1219 5 6 2.6648 3.2065 -1.1944 6 6 2.8864 3.8335 -2.5153 7 8 3.4102 4.9281 -2.5883 8 7 2.5077 3.1915 -3.6382 9 6 1.9279 1.8488 -3.5541 10 6 2.6703 3.8388 -4.9424 11 6 4.0257 3.4986 -5.5065 12 1 4.6989 2.8641 -4.9491 13 6 4.4069 3.9983 -6.7337 14 7 3.5873 4.7713 -7.4122 15 14 6.0866 3.5761 -7.4333 16 1 6.8121 2.6961 -6.4821 17 1 5.9201 2.8727 -8.7304 18 1 6.8634 4.8242 -7.6431 19 6 2.9244 3.9409 -0.0122 20 6 2.7080 3.3300 1.1872 21 6 2.2366 1.9984 1.1762 22 8 2.0285 1.4120 2.2252 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7278 1.1096 -3.5109 29 1 1.3148 1.7734 -2.6560 30 1 1.3097 1.6643 -4.4326 31 1 1.8949 3.4860 -5.6223 32 1 2.5864 4.9192 -4.8248 33 1 3.8552 5.1226 -8.2758 34 1 3.2842 4.9581 -0.0593 35 1 2.8908 3.8482 2.1169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110660957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:19 Heat of formation + Delta-G solvation = 14.381199 kcal Electronic energy + Delta-G solvation = -20136.532666 eV Core-core repulsion = 16944.223737 eV Total energy + Delta-G solvation = -3192.308929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.18366 -39.15274 -37.61108 -35.52685 -34.95203 -32.74342 -32.01350 -30.75235 -27.79285 -26.47007 -25.47077 -24.62746 -23.23802 -22.40855 -19.94593 -18.37750 -17.36106 -16.76054 -16.67933 -16.48465 -15.79112 -15.35479 -14.59394 -14.40802 -14.21471 -13.98909 -13.60253 -13.36171 -12.89599 -12.73213 -12.48496 -12.42250 -12.16102 -12.07204 -11.49428 -11.31334 -11.01433 -10.85535 -10.60645 -10.49494 -10.20230 -9.77845 -9.66791 -9.22562 -8.60311 -8.47080 -7.74780 -6.08382 -4.13037 0.41076 1.22519 2.06070 3.03154 3.28394 3.36126 3.39949 3.59203 3.79141 4.00430 4.41841 4.62854 4.72549 4.76508 4.79259 4.88690 5.01049 5.26311 5.29411 5.52335 5.57804 5.65605 5.79857 5.83946 5.86024 5.94045 6.15346 6.39066 6.94977 7.32668 7.41815 7.47303 7.87075 7.94414 8.16361 8.23955 8.75358 8.94087 9.51988 10.99834 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.030337 B = 0.004872 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.742229 B = 5745.531894 C = 6093.312212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.345 5.345 4 N -0.177 5.177 5 C 0.029 3.971 6 C 0.568 3.432 7 O -0.528 6.528 8 N -0.576 5.576 9 C 0.080 3.920 10 C 0.243 3.757 11 C -0.526 4.526 12 H 0.059 0.941 13 C 0.062 3.938 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.025 4.025 20 C -0.201 4.201 21 C 0.480 3.520 22 O -0.538 6.538 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.163 0.837 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 -8.115 13.217 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.014 4.014 3 N -0.167 5.167 4 N -0.007 5.007 5 C -0.142 4.142 6 C 0.351 3.649 7 O -0.403 6.403 8 N -0.306 5.306 9 C -0.064 4.064 10 C 0.124 3.876 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.140 4.140 14 N -0.533 5.533 15 Si 0.727 3.273 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.049 4.049 20 C -0.231 4.231 21 C 0.279 3.721 22 O -0.418 6.418 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.181 0.819 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.061 -8.523 13.075 16.743 hybrid contribution 1.148 0.316 0.042 1.192 sum -4.913 -8.207 13.117 16.234 Atomic orbital electron populations 1.22116 0.93747 1.03546 1.03160 1.22020 0.95973 0.77866 1.05521 1.47151 1.51692 1.14843 1.02969 1.71933 1.07361 1.11011 1.10395 1.22384 1.04106 0.90454 0.97238 1.17215 0.80651 0.85215 0.81845 1.90806 1.43755 1.20210 1.85578 1.48104 1.57945 1.16675 1.07869 1.22170 0.98337 0.83822 1.02079 1.19464 0.97237 0.94483 0.76366 1.21432 1.00875 1.30908 1.03244 0.92279 1.24926 0.97524 0.94847 0.96744 1.69937 1.35986 1.33368 1.14057 0.86423 0.83896 0.78267 0.78726 1.19802 1.20947 1.20828 1.22306 0.90488 1.01696 0.90368 1.22649 1.05729 0.94395 1.00279 1.18097 0.80936 0.88985 0.84098 1.90932 1.53844 1.67300 1.29684 0.91493 0.90090 0.91903 0.87823 0.87668 0.92977 0.89885 0.91697 0.94448 0.93544 0.92699 0.81937 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.23 37.16 0.38 -0.99 16 2 C 0.11 1.00 6.27 -4.04 -0.03 0.98 16 3 N -0.35 -4.41 3.22 -63.34 -0.20 -4.61 16 4 N -0.18 -2.49 6.59 33.42 0.22 -2.27 16 5 C 0.03 0.46 6.72 -82.83 -0.56 -0.09 16 6 C 0.57 11.50 7.65 -12.31 -0.09 11.41 16 7 O -0.53 -12.49 16.01 5.31 0.09 -12.40 16 8 N -0.58 -11.95 2.86 -184.06 -0.53 -12.47 16 9 C 0.08 1.28 9.41 59.84 0.56 1.84 16 10 C 0.24 6.14 5.18 -5.19 -0.03 6.12 16 11 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 15 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 C -0.02 -0.33 9.67 -39.00 -0.38 -0.71 16 20 C -0.20 -2.46 10.11 -39.12 -0.40 -2.85 16 21 C 0.48 6.68 7.47 -15.19 -0.11 6.57 16 22 O -0.54 -8.58 16.62 4.94 0.08 -8.49 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.11 0.97 7.36 -51.93 -0.38 0.59 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.15 5.20 -53.67 -0.28 0.87 16 30 H 0.06 0.98 7.82 -51.93 -0.41 0.58 16 31 H 0.04 0.95 7.85 -51.93 -0.41 0.54 16 32 H 0.05 1.30 7.46 -51.93 -0.39 0.92 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.16 1.97 7.73 -52.48 -0.41 1.56 16 35 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -33.09 305.31 -5.44 -38.53 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.35 Total: -3.14 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.07 Total: 9.00 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.23 Total: -44.57 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.17 Total: -20.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.09 -5.44 -38.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110660957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.914 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds