Wall clock time and date at job start Mon Mar 30 2020 00:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47544 * 2 1 4 4 N 1.28393 * 119.09855 * 270.23718 * 3 2 1 5 5 C 1.31401 * 122.26274 * 180.29658 * 4 3 2 6 6 C 1.47890 * 119.89042 * 179.74415 * 5 4 3 7 7 O 1.21558 * 119.99608 * 186.75552 * 6 5 4 8 8 N 1.34775 * 120.00146 * 6.76175 * 6 5 4 9 9 C 1.46496 * 119.99996 * 357.43567 * 8 6 5 10 10 C 1.46501 * 119.99990 * 177.16169 * 8 6 5 11 11 C 1.50702 * 109.47019 * 89.99786 * 10 8 6 12 12 H 1.07999 * 120.00153 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99987 * 180.02562 * 11 10 8 14 14 N 1.31522 * 119.99867 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00277 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47075 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47339 * 119.99502 * 15 13 11 18 18 H 1.48495 * 109.47167 * 239.99820 * 15 13 11 19 19 C 1.41576 * 120.21373 * 359.46571 * 5 4 3 20 20 C 1.36331 * 118.23876 * 0.25762 * 19 5 4 21 21 C 1.34608 * 119.10115 * 89.99845 * 3 2 1 22 22 O 1.21973 * 120.22530 * 359.96057 * 21 3 2 23 23 H 1.09001 * 109.47302 * 59.99710 * 1 2 3 24 24 H 1.08995 * 109.47482 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47095 * 299.99884 * 1 2 3 26 26 H 1.09001 * 109.47146 * 239.99660 * 2 1 3 27 27 H 1.09001 * 109.47302 * 120.00290 * 2 1 3 28 28 H 1.09006 * 109.47145 * 275.82611 * 9 8 6 29 29 H 1.08997 * 109.47105 * 35.81977 * 9 8 6 30 30 H 1.08996 * 109.47215 * 155.82529 * 9 8 6 31 31 H 1.08996 * 109.47117 * 209.99570 * 10 8 6 32 32 H 1.09002 * 109.47213 * 329.99575 * 10 8 6 33 33 H 0.96996 * 120.00082 * 180.02562 * 14 13 11 34 34 H 1.08005 * 120.87902 * 180.27294 * 19 5 4 35 35 H 1.07993 * 121.03270 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2222 1.9714 -1.1219 5 6 2.6648 3.2065 -1.1944 6 6 2.8864 3.8335 -2.5153 7 8 3.4102 4.9281 -2.5883 8 7 2.5077 3.1915 -3.6382 9 6 1.9279 1.8488 -3.5541 10 6 2.6703 3.8388 -4.9424 11 6 4.0257 3.4986 -5.5065 12 1 4.6989 2.8641 -4.9491 13 6 4.4069 3.9983 -6.7337 14 7 3.5873 4.7713 -7.4122 15 14 6.0866 3.5761 -7.4333 16 1 6.8121 2.6961 -6.4821 17 1 5.9201 2.8727 -8.7304 18 1 6.8634 4.8242 -7.6431 19 6 2.9244 3.9409 -0.0122 20 6 2.7080 3.3300 1.1872 21 6 2.2366 1.9984 1.1762 22 8 2.0285 1.4120 2.2252 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7278 1.1096 -3.5109 29 1 1.3148 1.7734 -2.6560 30 1 1.3097 1.6643 -4.4326 31 1 1.8949 3.4860 -5.6223 32 1 2.5864 4.9192 -4.8248 33 1 3.8552 5.1226 -8.2758 34 1 3.2842 4.9581 -0.0593 35 1 2.8908 3.8482 2.1169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110660957.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:19 Heat of formation + Delta-G solvation = -7.813184 kcal Electronic energy + Delta-G solvation = -20137.495086 eV Core-core repulsion = 16944.223737 eV Total energy + Delta-G solvation = -3193.271350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.29992 -40.69331 -38.84245 -36.84652 -36.35027 -34.75150 -33.05596 -31.88415 -29.63605 -27.80983 -26.72447 -25.90536 -24.78117 -23.52646 -21.41493 -19.53983 -18.72478 -18.56838 -17.93596 -17.70618 -17.09402 -16.93519 -16.35294 -15.95604 -15.23195 -15.02632 -14.83537 -14.51379 -14.27084 -14.25225 -13.77486 -13.71495 -13.49146 -13.21144 -13.04399 -12.86850 -12.58659 -12.27990 -12.18035 -12.05574 -11.67340 -11.51256 -11.18525 -10.64883 -10.60342 -9.72615 -9.47007 -8.20650 -6.34459 -0.67042 0.01302 1.02883 1.39676 1.41933 1.53379 1.75595 2.12560 2.40190 2.45477 2.81910 3.09895 3.54828 3.57183 3.71446 4.04440 4.05234 4.29153 4.46252 4.50038 4.53690 4.74799 4.83049 4.85333 4.89717 4.96138 5.02333 5.14430 5.21665 5.23455 5.56038 5.80524 6.05982 6.34931 6.58057 6.73613 6.82443 7.17872 7.37652 8.86775 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.030337 B = 0.004872 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.742229 B = 5745.531894 C = 6093.312212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.337 5.337 4 N -0.164 5.164 5 C 0.016 3.984 6 C 0.565 3.435 7 O -0.572 6.572 8 N -0.585 5.585 9 C 0.081 3.919 10 C 0.257 3.743 11 C -0.541 4.541 12 H 0.052 0.948 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.966 3.034 16 H -0.269 1.269 17 H -0.270 1.270 18 H -0.281 1.281 19 C -0.027 4.027 20 C -0.185 4.185 21 C 0.472 3.528 22 O -0.558 6.558 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.047 0.953 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.008 0.992 33 H 0.268 0.732 34 H 0.172 0.828 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 -9.858 14.116 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.158 5.158 4 N 0.004 4.996 5 C -0.153 4.153 6 C 0.350 3.650 7 O -0.451 6.451 8 N -0.315 5.315 9 C -0.062 4.062 10 C 0.136 3.864 11 C -0.580 4.580 12 H 0.070 0.930 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.791 3.209 16 H -0.194 1.194 17 H -0.195 1.195 18 H -0.207 1.207 19 C -0.051 4.051 20 C -0.215 4.215 21 C 0.272 3.728 22 O -0.439 6.439 23 H 0.083 0.917 24 H 0.126 0.874 25 H 0.066 0.934 26 H 0.143 0.857 27 H 0.128 0.872 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.189 0.811 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.881 -10.304 13.984 18.339 hybrid contribution 1.012 0.771 -0.173 1.284 sum -4.869 -9.533 13.811 17.474 Atomic orbital electron populations 1.22101 0.92549 1.05100 1.02247 1.22420 0.96944 0.76130 1.06827 1.47455 1.50321 1.15735 1.02315 1.71792 1.06486 1.10265 1.11022 1.21694 1.06531 0.91498 0.95618 1.17697 0.79470 0.84718 0.83084 1.90767 1.45529 1.22161 1.86594 1.48085 1.58520 1.18267 1.06615 1.22379 0.98751 0.81386 1.03666 1.18973 0.96283 0.92634 0.78499 1.21678 1.01773 1.30944 1.03601 0.92967 1.25784 1.01305 0.94591 0.97099 1.70040 1.37862 1.34163 1.14531 0.85391 0.79140 0.78056 0.78353 1.19368 1.19519 1.20692 1.22291 0.91014 1.02057 0.89695 1.22887 1.04096 0.93618 1.00867 1.18383 0.80842 0.89530 0.84038 1.90932 1.54773 1.67873 1.30283 0.91714 0.87366 0.93401 0.85722 0.87203 0.92294 0.87499 0.90971 0.94911 0.97355 0.92340 0.81088 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.23 71.98 0.74 -1.48 16 2 C 0.09 1.53 6.27 86.38 0.54 2.07 16 3 N -0.34 -7.81 3.22 -472.49 -1.52 -9.33 16 4 N -0.16 -4.31 6.59 -48.19 -0.32 -4.63 16 5 C 0.02 0.49 6.72 42.59 0.29 0.78 16 6 C 0.56 23.20 7.65 86.80 0.66 23.87 16 7 O -0.57 -27.99 16.01 -3.90 -0.06 -28.05 16 8 N -0.59 -24.56 2.86 -854.52 -2.44 -27.00 16 9 C 0.08 2.48 9.41 127.77 1.20 3.69 16 10 C 0.26 13.40 5.18 85.63 0.44 13.84 16 11 C -0.54 -30.49 9.39 25.60 0.24 -30.24 16 12 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 13 C 0.01 0.64 5.46 84.65 0.46 1.11 16 14 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16 15 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 C -0.03 -0.69 9.67 22.65 0.22 -0.47 16 20 C -0.19 -4.12 10.11 22.57 0.23 -3.89 16 21 C 0.47 12.11 7.47 85.01 0.63 12.75 16 22 O -0.56 -16.59 16.62 -5.23 -0.09 -16.68 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.12 1.51 8.14 -2.39 -0.02 1.50 16 27 H 0.11 1.74 7.36 -2.39 -0.02 1.73 16 28 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.11 2.75 5.20 -4.63 -0.02 2.73 16 30 H 0.07 2.11 7.82 -2.39 -0.02 2.09 16 31 H 0.03 1.71 7.85 -2.39 -0.02 1.70 16 32 H 0.01 0.49 7.46 -2.39 -0.02 0.48 16 33 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.17 4.01 7.73 -2.91 -0.02 3.99 16 35 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -72.20 305.31 4.63 -67.57 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.09 Total: 4.26 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 5.66 Total: 22.01 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -3.99 Total: -95.20 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -0.15 Total: -44.73 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -72.20 4.63 -67.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110660957.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.753 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds