Wall clock time and date at job start Mon Mar 30 2020 00:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47682 * 2 1 4 4 C 1.50701 * 109.47094 * 120.00292 * 2 1 3 5 5 H 1.08005 * 119.99811 * 119.99756 * 4 2 1 6 6 C 1.37875 * 120.00048 * 299.99705 * 4 2 1 7 7 N 1.31513 * 120.00005 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00003 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47293 * 59.99942 * 8 6 4 10 10 H 1.48500 * 109.47343 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47185 * 299.99846 * 8 6 4 12 12 N 1.46507 * 109.46884 * 240.00046 * 2 1 3 13 13 C 1.46499 * 120.00109 * 299.99904 * 12 2 1 14 14 C 1.34782 * 119.99812 * 120.00458 * 12 2 1 15 15 O 1.21675 * 119.99739 * 6.29384 * 14 12 2 16 16 C 1.46810 * 119.99815 * 186.29550 * 14 12 2 17 17 C 1.36350 * 125.84981 * 188.06489 * 16 14 12 18 18 C 1.41300 * 107.01389 * 180.02562 * 17 16 14 19 19 C 1.47384 * 126.46426 * 179.97438 * 18 17 16 20 20 N 1.34775 * 120.00100 * 180.02562 * 19 18 17 21 21 O 1.21610 * 120.00349 * 0.02562 * 19 18 17 22 22 C 1.38210 * 107.07194 * 0.02562 * 18 17 16 23 23 N 1.34269 * 108.39703 * 359.72783 * 22 18 17 24 24 H 0.97002 * 125.39027 * 180.25143 * 23 22 18 25 25 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47132 * 299.99579 * 1 2 3 27 27 H 1.08999 * 109.47008 * 59.99644 * 1 2 3 28 28 H 0.97000 * 120.00043 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46691 * 95.81397 * 13 12 2 30 30 H 1.08999 * 109.46996 * 215.81604 * 13 12 2 31 31 H 1.09000 * 109.46891 * 335.81338 * 13 12 2 32 32 H 1.08002 * 126.48992 * 0.02911 * 17 16 14 33 33 H 0.97005 * 120.00139 * 0.02562 * 20 19 18 34 34 H 0.97002 * 120.00620 * 179.97438 * 20 19 18 35 35 H 1.07998 * 125.80179 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8074 -1.1192 4.0076 10 1 1.8270 -0.4202 5.2204 11 1 1.8280 -2.5199 4.0081 12 7 2.0182 -0.6906 -1.1963 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1818 1.0907 -1.8365 16 6 3.1682 -0.6811 -3.3475 17 6 4.0641 -0.1989 -4.2553 18 6 4.1197 -1.1306 -5.3162 19 6 4.9539 -1.0304 -6.5271 20 7 4.9039 -1.9999 -7.4620 21 8 5.6874 -0.0729 -6.6827 22 6 3.2434 -2.1530 -5.0048 23 7 2.6786 -1.8801 -3.8176 24 1 2.0272 -2.4375 -3.3640 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 0.7088 1.1611 3.4845 29 1 0.7963 -2.1450 -2.0854 30 1 2.5045 -2.6076 -1.8945 31 1 1.4288 -2.5705 -0.4769 32 1 4.6249 0.7208 -4.1781 33 1 4.3186 -2.7634 -7.3381 34 1 5.4527 -1.9338 -8.2592 35 1 3.0498 -3.0257 -5.6108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176480855.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:30 Heat of formation + Delta-G solvation = -42.714514 kcal Electronic energy + Delta-G solvation = -19823.159688 eV Core-core repulsion = 16628.374903 eV Total energy + Delta-G solvation = -3194.784785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.71651 -40.42824 -39.63897 -37.31242 -34.97859 -34.59173 -32.50657 -31.63770 -29.98821 -27.93954 -27.32100 -24.85747 -23.96802 -21.92917 -21.20042 -20.55500 -19.00091 -18.49722 -17.67091 -17.63736 -17.16173 -16.66801 -16.52436 -15.92066 -15.70280 -14.92230 -14.86465 -14.58710 -14.38988 -14.33121 -14.07484 -13.58268 -13.36489 -13.07009 -12.86738 -12.78383 -12.65431 -12.22317 -12.15084 -11.25376 -11.19738 -10.99731 -10.60936 -10.53952 -10.16846 -9.59777 -9.26139 -8.16395 -6.33501 0.47310 0.80188 1.41149 1.44450 1.51361 1.97841 2.17394 2.32756 2.44189 2.60955 2.80294 3.12138 3.65163 3.93006 4.07807 4.08976 4.31714 4.43885 4.70693 4.80116 4.86284 4.89711 4.92535 5.01910 5.37314 5.44450 5.48154 5.61524 5.67891 6.00632 6.01428 6.12657 6.36130 6.63821 6.67963 6.73881 7.20465 7.39894 7.49740 8.87976 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.038050 B = 0.004203 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.699953 B = 6659.573291 C = 6712.165220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.261 3.739 3 H 0.007 0.993 4 C -0.541 4.541 5 H 0.063 0.937 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.596 5.596 13 C 0.058 3.942 14 C 0.564 3.436 15 O -0.596 6.596 16 C -0.063 4.063 17 C -0.076 4.076 18 C -0.267 4.267 19 C 0.593 3.407 20 N -0.826 5.826 21 O -0.608 6.608 22 C 0.119 3.881 23 N -0.510 5.510 24 H 0.441 0.559 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.419 0.581 34 H 0.411 0.589 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -16.528 -17.066 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.159 3.841 3 H 0.025 0.975 4 C -0.580 4.580 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.182 1.182 12 N -0.326 5.326 13 C -0.084 4.084 14 C 0.353 3.647 15 O -0.478 6.478 16 C -0.174 4.174 17 C -0.103 4.103 18 C -0.277 4.277 19 C 0.380 3.620 20 N -0.390 5.390 21 O -0.491 6.491 22 C -0.025 4.025 23 N -0.113 5.113 24 H 0.291 0.709 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.252 0.748 34 H 0.243 0.757 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -0.410 -15.276 -16.541 22.519 hybrid contribution 0.143 0.014 1.146 1.155 sum -0.266 -15.261 -15.395 21.679 Atomic orbital electron populations 1.21874 0.96440 1.00546 1.00096 1.18615 0.91938 0.92172 0.81338 0.97545 1.21529 1.32121 1.13284 0.91028 0.91907 1.25736 0.94978 0.95608 1.02054 1.70012 1.37143 1.23804 1.24587 0.85499 0.78235 0.79157 0.78058 1.20622 1.21014 1.18233 1.48120 1.48788 1.13158 1.22504 1.22250 1.00773 0.80876 1.04507 1.17750 0.78579 0.85184 0.83144 1.90768 1.56863 1.21530 1.78613 1.19653 1.07475 0.92424 0.97854 1.21006 0.97011 0.99319 0.92935 1.19565 1.08910 1.00453 0.98743 1.17520 0.80052 0.81777 0.82603 1.43356 1.48046 1.24549 1.23033 1.90800 1.43431 1.35073 1.79765 1.23357 0.92513 0.99641 0.86943 1.42849 1.34274 1.16753 1.17438 0.70925 0.92765 0.91310 0.96060 0.92570 0.89746 0.89652 0.89264 0.86087 0.74850 0.75692 0.73379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.97 71.98 0.65 -5.44 16 2 C 0.26 13.46 2.62 44.24 0.12 13.58 16 3 H 0.01 0.41 6.91 -2.39 -0.02 0.40 16 4 C -0.54 -28.94 7.95 25.60 0.20 -28.74 16 5 H 0.06 3.22 7.43 -2.91 -0.02 3.20 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -52.52 11.32 21.45 0.24 -52.28 16 8 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 9 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 12 N -0.60 -24.64 2.75 -831.36 -2.29 -26.93 16 13 C 0.06 1.54 7.72 127.77 0.99 2.53 16 14 C 0.56 24.84 7.63 86.48 0.66 25.50 16 15 O -0.60 -33.00 16.22 -4.27 -0.07 -33.07 16 16 C -0.06 -2.05 6.57 40.01 0.26 -1.79 16 17 C -0.08 -2.59 10.38 22.58 0.23 -2.36 16 18 C -0.27 -6.33 6.13 -20.12 -0.12 -6.46 16 19 C 0.59 14.24 8.09 86.65 0.70 14.94 16 20 N -0.83 -8.71 8.86 -175.92 -1.56 -10.27 16 21 O -0.61 -21.81 17.76 -4.06 -0.07 -21.88 16 22 C 0.12 1.49 11.43 84.31 0.96 2.45 16 23 N -0.51 -9.35 4.98 -183.35 -0.91 -10.27 16 24 H 0.44 5.44 4.86 -92.71 -0.45 4.99 16 25 H 0.05 2.20 7.67 -2.39 -0.02 2.18 16 26 H 0.07 3.60 6.07 -2.38 -0.01 3.58 16 27 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.08 1.59 7.42 -2.39 -0.02 1.57 16 30 H 0.09 1.73 5.69 -2.39 -0.01 1.71 16 31 H 0.09 2.57 7.11 -2.39 -0.02 2.55 16 32 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 33 H 0.42 0.54 7.74 -92.70 -0.72 -0.17 16 34 H 0.41 3.55 8.93 -92.71 -0.83 2.72 16 35 H 0.25 -0.58 7.44 -2.91 -0.02 -0.61 16 Total: -1.00 -88.02 297.33 1.64 -86.39 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -0.83 Total: 8.33 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 5.10 Total: 15.53 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -4.52 Total: -99.75 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -0.14 Total: -54.95 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -88.02 1.64 -86.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176480855.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.674 kcal (2) G-P(sol) polarization free energy of solvation -88.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds