Wall clock time and date at job start Sun Mar 29 2020 23:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46964 * 2 1 4 4 H 1.08996 * 109.47179 * 305.00107 * 3 2 1 5 5 C 1.50700 * 109.46928 * 184.99999 * 3 2 1 6 6 H 1.07999 * 120.00315 * 239.99726 * 5 3 2 7 7 C 1.37879 * 120.00012 * 60.00382 * 5 3 2 8 8 N 1.31513 * 119.99899 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99998 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47056 * 89.99829 * 9 7 5 11 11 H 1.48503 * 109.46970 * 209.99902 * 9 7 5 12 12 H 1.48504 * 109.47158 * 329.99748 * 9 7 5 13 13 N 1.46503 * 109.47063 * 65.00426 * 3 2 1 14 14 C 1.39009 * 119.99914 * 274.99661 * 13 3 2 15 15 N 1.32428 * 119.70361 * 354.36509 * 14 13 3 16 16 C 1.31943 * 121.62190 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.57267 * 179.97438 * 16 15 14 18 18 C 1.38062 * 120.85412 * 359.71159 * 16 15 14 19 19 C 1.38837 * 119.33121 * 0.53799 * 18 16 15 20 20 C 1.38349 * 118.50073 * 359.47720 * 19 18 16 21 21 N 1.47998 * 120.44674 * 180.29599 * 20 19 18 22 22 O 1.21800 * 119.99725 * 142.62828 * 21 20 19 23 23 O 1.21795 * 120.00487 * 322.62439 * 21 20 19 24 24 H 1.09006 * 109.47022 * 299.99610 * 1 2 3 25 25 H 1.08993 * 109.47171 * 59.99627 * 1 2 3 26 26 H 1.08996 * 109.46799 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47043 * 240.00447 * 2 1 3 28 28 H 1.08996 * 109.46958 * 119.99885 * 2 1 3 29 29 H 0.96997 * 120.00250 * 179.97438 * 8 7 5 30 30 H 0.96994 * 120.00221 * 94.99455 * 13 3 2 31 31 H 1.09004 * 109.47275 * 89.99484 * 17 16 15 32 32 H 1.08994 * 109.47327 * 209.99639 * 17 16 15 33 33 H 1.09003 * 109.46990 * 330.00128 * 17 16 15 34 34 H 1.08004 * 120.33890 * 180.31298 * 18 16 15 35 35 H 1.07996 * 120.75269 * 179.74810 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8889 0.6522 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3819 10 1 6.5549 -0.3502 -0.7603 11 1 6.3829 0.9225 -2.8174 12 1 6.5569 2.0739 -0.6902 13 7 1.6525 2.0975 1.2519 14 6 0.3970 2.6822 1.3707 15 7 -0.4011 2.7430 0.3156 16 6 -1.5998 3.2899 0.3856 17 6 -2.4697 3.3348 -0.8442 18 6 -2.0696 3.8166 1.5721 19 6 -1.2618 3.7777 2.7006 20 6 -0.0099 3.1981 2.5966 21 7 0.8841 3.1276 3.7740 22 8 1.5840 2.1463 3.9493 23 8 0.9199 4.0508 4.5677 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0610 -2.9499 30 1 2.2720 2.1231 1.9978 31 1 -3.0809 2.4334 -0.8901 32 1 -3.1168 4.2107 -0.7997 33 1 -1.8404 3.3927 -1.7324 34 1 -3.0542 4.2578 1.6212 35 1 -1.6046 4.1866 3.6395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184153067.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:33 Heat of formation + Delta-G solvation = 29.539795 kcal Electronic energy + Delta-G solvation = -20571.583612 eV Core-core repulsion = 17379.932009 eV Total energy + Delta-G solvation = -3191.651603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88660 -40.15164 -36.74543 -36.02027 -33.66793 -32.94397 -31.46756 -30.42941 -28.64931 -26.97022 -24.78620 -23.51735 -22.49174 -22.07737 -19.89638 -18.97377 -18.42535 -17.66935 -17.02283 -16.38372 -15.79152 -15.01409 -14.81587 -14.59302 -13.89057 -13.57154 -13.24459 -12.76394 -12.68106 -12.34691 -12.20035 -11.82091 -11.38428 -11.25738 -11.08144 -10.96948 -10.88321 -10.79533 -10.53291 -10.29986 -10.20279 -9.80564 -9.65172 -9.36458 -9.08819 -8.55506 -7.44480 -6.23251 -4.32617 0.35165 1.42605 1.49368 1.82201 3.20819 3.27464 3.30190 3.56231 3.71800 4.25538 4.42181 4.55440 4.83182 5.04582 5.09484 5.26717 5.46654 5.55722 5.75207 5.89880 5.92861 6.20304 6.25524 6.33487 6.46269 6.71890 6.87129 6.92329 7.16335 7.26012 7.51253 7.55135 7.74321 7.99442 8.01176 8.05526 8.43249 8.73978 9.33995 10.82054 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.018905 B = 0.007001 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.698500 B = 3998.358235 C = 4948.677234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.062 0.938 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.071 3.929 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.661 5.661 14 C 0.474 3.526 15 N -0.511 5.511 16 C 0.227 3.773 17 C -0.110 4.110 18 C -0.258 4.258 19 C 0.031 3.969 20 C -0.199 4.199 21 N 0.050 4.950 22 O -0.180 6.180 23 O -0.176 6.176 24 H 0.028 0.972 25 H 0.054 0.946 26 H 0.028 0.972 27 H 0.105 0.895 28 H 0.035 0.965 29 H 0.266 0.734 30 H 0.409 0.591 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 4.954 3.612 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.079 0.921 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.284 5.284 14 C 0.228 3.772 15 N -0.231 5.231 16 C 0.081 3.919 17 C -0.167 4.167 18 C -0.283 4.283 19 C 0.005 3.995 20 C -0.293 4.293 21 N 0.563 4.437 22 O -0.389 6.389 23 O -0.390 6.390 24 H 0.047 0.953 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.123 0.877 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.249 0.751 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.162 0.838 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.503 4.357 1.938 12.452 hybrid contribution 1.150 0.279 1.398 1.832 sum -10.352 4.636 3.335 11.823 Atomic orbital electron populations 1.21822 0.98664 0.98471 1.00395 1.21952 0.92455 0.99371 1.02880 1.19097 0.94782 0.89400 0.79966 0.92060 1.21196 0.90390 1.39640 1.06571 0.92028 1.24833 0.98882 0.94452 0.95137 1.69867 1.35279 1.37370 1.09335 0.86409 0.84464 0.78704 0.77383 1.20312 1.20951 1.19802 1.46361 1.10051 1.51912 1.20109 1.18107 0.87997 0.85276 0.85771 1.67749 1.05503 1.22700 1.27162 1.21442 0.89556 0.85946 0.94983 1.20845 0.98212 1.03118 0.94535 1.21462 1.02756 1.11508 0.92535 1.20975 0.89346 0.89204 1.00000 1.21304 0.96788 1.24423 0.86755 1.43355 0.99855 0.99228 1.01215 1.94507 1.40959 1.22886 1.80540 1.94471 1.72313 1.30453 1.41737 0.95340 0.92661 0.95316 0.87686 0.94591 0.92414 0.75090 0.89502 0.90167 0.89601 0.83823 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.52 37.16 0.32 -2.45 16 2 C -0.13 -2.99 5.45 -26.73 -0.15 -3.14 16 3 C 0.27 6.54 2.25 -69.08 -0.16 6.39 16 4 H 0.06 1.63 7.45 -51.93 -0.39 1.24 16 5 C -0.54 -14.28 8.73 -34.44 -0.30 -14.58 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -23.74 11.29 55.43 0.63 -23.12 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.66 -14.46 4.94 -55.06 -0.27 -14.73 16 14 C 0.47 9.27 5.78 -155.01 -0.90 8.37 16 15 N -0.51 -9.27 6.82 -8.67 -0.06 -9.33 16 16 C 0.23 3.15 6.78 -82.61 -0.56 2.59 16 17 C -0.11 -1.09 10.17 36.01 0.37 -0.73 16 18 C -0.26 -3.08 9.73 -39.42 -0.38 -3.46 16 19 C 0.03 0.43 9.80 -39.32 -0.39 0.05 16 20 C -0.20 -3.52 6.54 -79.60 -0.52 -4.05 16 21 N 0.05 0.95 4.29 34.13 0.15 1.10 16 22 O -0.18 -3.64 16.77 -29.46 -0.49 -4.13 16 23 O -0.18 -3.25 18.99 -29.46 -0.56 -3.81 16 24 H 0.03 0.57 5.73 -51.93 -0.30 0.27 16 25 H 0.05 1.12 7.77 -51.93 -0.40 0.72 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.11 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.41 8.99 6.12 -40.82 -0.25 8.74 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.15 1.63 8.05 -52.49 -0.42 1.21 16 LS Contribution 298.83 15.07 4.50 4.50 Total: -1.00 -28.34 298.83 -8.03 -36.37 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.14 Total: 6.83 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.76 Total: -9.25 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.44 Total: -46.08 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -1.05 Total: -7.94 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.34 -8.03 -36.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184153067.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.911 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds