Wall clock time and date at job start Mon Mar 30 2020 00:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46964 * 2 1 4 4 C 1.46507 * 120.00277 * 91.01097 * 3 2 1 5 5 C 1.50695 * 109.46969 * 90.00045 * 4 3 2 6 6 H 1.08001 * 120.00372 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00250 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99501 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00622 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46988 * 59.99684 * 9 7 5 11 11 H 1.48498 * 109.47112 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47011 * 300.00191 * 9 7 5 13 13 C 1.34777 * 119.99750 * 271.01072 * 3 2 1 14 14 O 1.21682 * 119.99689 * 186.13864 * 13 3 2 15 15 C 1.46806 * 120.00099 * 6.14533 * 13 3 2 16 16 C 1.36358 * 125.84825 * 187.72752 * 15 13 3 17 17 C 1.41306 * 107.00788 * 179.85139 * 16 15 13 18 18 C 1.47387 * 126.46159 * 180.14061 * 17 16 15 19 19 N 1.34777 * 120.00286 * 180.29853 * 18 17 16 20 20 O 1.21608 * 120.00075 * 0.29237 * 18 17 16 21 21 C 1.38216 * 107.07526 * 0.40467 * 17 16 15 22 22 N 1.34258 * 108.39569 * 359.74881 * 21 17 16 23 23 H 0.96999 * 125.39321 * 180.02562 * 22 21 17 24 24 H 1.09001 * 109.46580 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47221 * 300.00049 * 1 2 3 26 26 H 1.08992 * 109.46719 * 60.00552 * 1 2 3 27 27 H 1.09004 * 109.47106 * 119.99225 * 2 1 3 28 28 H 1.08995 * 109.47887 * 239.99662 * 2 1 3 29 29 H 1.08995 * 109.46696 * 210.00157 * 4 3 2 30 30 H 1.08997 * 109.46605 * 329.99982 * 4 3 2 31 31 H 0.97005 * 119.99493 * 180.02562 * 8 7 5 32 32 H 1.07997 * 126.49533 * 359.97438 * 16 15 13 33 33 H 0.97008 * 119.99993 * 359.97438 * 19 18 17 34 34 H 0.96998 * 120.00419 * 179.97438 * 19 18 17 35 35 H 1.07996 * 125.79599 * 179.78526 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2836 2.0645 1.2686 5 6 3.7139 1.8253 1.6784 6 1 4.3608 1.2248 1.0560 7 6 4.1968 2.3730 2.8479 8 7 3.4089 3.1038 3.6060 9 14 5.9695 2.0759 3.3564 10 1 6.8801 2.6053 2.3095 11 1 6.2381 2.7675 4.6427 12 1 6.1995 0.6181 3.5213 13 6 2.2235 2.0234 -1.1671 14 8 2.7335 3.1282 -1.1720 15 6 1.8316 1.3901 -2.4322 16 6 2.1143 1.8588 -3.6811 17 6 1.5555 0.9443 -4.6020 18 6 1.6120 1.0367 -6.0719 19 7 1.0257 0.0888 -6.8298 20 8 2.1876 1.9682 -6.6010 21 6 0.9407 -0.0499 -3.8645 22 7 1.1100 0.2234 -2.5610 23 1 0.7774 -0.3154 -1.8262 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5137 -0.8900 27 1 1.8934 -0.5137 0.8901 28 1 1.8935 -0.5138 -0.8899 29 1 2.1145 3.1344 1.1472 30 1 1.6155 1.6759 2.0371 31 1 3.7487 3.4895 4.4287 32 1 2.6632 2.7574 -3.9209 33 1 0.5668 -0.6544 -6.4078 34 1 1.0625 0.1498 -7.7971 35 1 0.4143 -0.9021 -4.2683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267497107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:57 Heat of formation + Delta-G solvation = -37.789937 kcal Electronic energy + Delta-G solvation = -19877.023180 eV Core-core repulsion = 16682.451941 eV Total energy + Delta-G solvation = -3194.571239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.84777 -40.41556 -39.60809 -37.34820 -35.05359 -34.60355 -32.77322 -31.43470 -30.82599 -28.89989 -25.57618 -24.61771 -24.24318 -22.53547 -21.21489 -20.58461 -19.07271 -18.59752 -17.79729 -17.74807 -17.07847 -16.73980 -16.41882 -16.04828 -15.64784 -15.22296 -14.84122 -14.78384 -14.45026 -14.20871 -14.01142 -13.71856 -13.39264 -13.34643 -13.15931 -12.74312 -12.59812 -12.27367 -12.09751 -11.78960 -11.20797 -10.99513 -10.66265 -10.60908 -10.16212 -9.68963 -9.31618 -8.25121 -6.39669 0.46096 0.79375 1.35176 1.40163 1.47173 1.95787 2.15055 2.31621 2.39436 2.60366 2.78792 3.04935 3.57279 3.78121 3.91265 4.05305 4.10993 4.27901 4.37409 4.68786 4.77827 4.86210 4.90510 4.94946 5.15545 5.26733 5.40058 5.48070 5.59300 5.77673 6.01342 6.01935 6.32457 6.59218 6.64893 6.68538 7.19148 7.34504 7.49653 8.81830 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.029648 B = 0.004620 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.182699 B = 6058.729499 C = 6548.817631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 N -0.599 5.599 4 C 0.264 3.736 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.258 1.258 13 C 0.565 3.435 14 O -0.587 6.587 15 C -0.065 4.065 16 C -0.075 4.075 17 C -0.266 4.266 18 C 0.593 3.407 19 N -0.825 5.825 20 O -0.608 6.608 21 C 0.117 3.883 22 N -0.515 5.515 23 H 0.443 0.557 24 H 0.122 0.878 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.094 0.906 29 H -0.004 1.004 30 H 0.035 0.965 31 H 0.268 0.732 32 H 0.121 0.879 33 H 0.419 0.581 34 H 0.411 0.589 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 -17.516 -14.433 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.046 4.046 3 N -0.329 5.329 4 C 0.143 3.857 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.790 3.210 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.182 1.182 13 C 0.354 3.646 14 O -0.468 6.468 15 C -0.176 4.176 16 C -0.102 4.102 17 C -0.275 4.275 18 C 0.381 3.619 19 N -0.389 5.389 20 O -0.490 6.490 21 C -0.027 4.027 22 N -0.122 5.122 23 H 0.296 0.704 24 H 0.140 0.860 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.014 0.986 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.252 0.748 34 H 0.243 0.757 35 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -10.906 -16.304 -14.153 24.189 hybrid contribution 0.888 0.340 0.772 1.224 sum -10.018 -15.965 -13.382 23.115 Atomic orbital electron populations 1.22516 0.93497 1.05399 1.03040 1.22195 0.95966 0.81791 1.04601 1.48170 1.63861 1.14825 1.06050 1.18790 0.95523 0.91581 0.79832 1.21654 0.97634 1.32699 1.06508 0.93105 1.25816 1.02419 0.94370 0.96245 1.70031 1.37860 1.34258 1.14406 0.85498 0.79044 0.79163 0.77292 1.20788 1.20140 1.18211 1.17717 0.78601 0.84917 0.83335 1.90787 1.46153 1.22720 1.87120 1.19673 1.10388 0.93946 0.93588 1.21018 0.99392 0.99259 0.90508 1.19569 1.13958 1.01296 0.92683 1.17509 0.76928 0.81411 0.86090 1.43348 1.57776 1.27076 1.10736 1.90801 1.46856 1.36164 1.75216 1.23405 0.97976 0.99589 0.81732 1.43291 1.40227 1.18832 1.09805 0.70440 0.85992 0.92303 0.91965 0.88903 0.88790 0.98554 0.94754 0.92298 0.86086 0.74831 0.75669 0.73240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.47 8.93 71.98 0.64 -2.83 16 2 C 0.08 2.08 5.60 86.38 0.48 2.57 16 3 N -0.60 -25.36 2.46 -830.72 -2.04 -27.40 16 4 C 0.26 14.17 5.11 85.63 0.44 14.61 16 5 C -0.55 -31.77 9.39 25.60 0.24 -31.53 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.63 5.46 84.65 0.46 1.09 16 8 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 9 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 13 C 0.56 25.62 7.62 86.48 0.66 26.28 16 14 O -0.59 -33.52 16.52 -4.29 -0.07 -33.59 16 15 C -0.06 -2.19 6.53 40.01 0.26 -1.92 16 16 C -0.08 -2.62 10.38 22.59 0.23 -2.39 16 17 C -0.27 -6.40 6.13 -20.12 -0.12 -6.52 16 18 C 0.59 14.36 8.09 86.65 0.70 15.06 16 19 N -0.83 -8.74 8.86 -175.91 -1.56 -10.30 16 20 O -0.61 -21.96 17.75 -4.06 -0.07 -22.03 16 21 C 0.12 1.51 11.43 84.32 0.96 2.47 16 22 N -0.52 -9.92 4.14 -183.35 -0.76 -10.68 16 23 H 0.44 6.19 3.31 -92.71 -0.31 5.88 16 24 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.12 6.46 -2.39 -0.02 1.10 16 27 H 0.09 2.61 8.06 -2.39 -0.02 2.59 16 28 H 0.09 1.99 5.23 -2.39 -0.01 1.98 16 29 H 0.00 -0.23 7.51 -2.39 -0.02 -0.25 16 30 H 0.03 1.82 8.07 -2.39 -0.02 1.80 16 31 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 32 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 33 H 0.42 0.52 7.74 -92.70 -0.72 -0.19 16 34 H 0.41 3.55 8.93 -92.71 -0.83 2.73 16 35 H 0.25 -0.56 7.44 -2.91 -0.02 -0.58 16 Total: -1.00 -92.81 301.76 2.08 -90.73 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -0.69 Total: 4.71 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 4.96 Total: 16.90 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -4.07 Total: -104.03 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.14 Total: -55.62 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -92.81 2.08 -90.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267497107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.940 kcal (2) G-P(sol) polarization free energy of solvation -92.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds