Wall clock time and date at job start Mon Mar 30 2020 00:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46722 * 2 1 4 4 C 1.34119 * 125.69422 * 125.00185 * 3 2 1 5 5 C 1.38623 * 107.33638 * 179.97438 * 4 3 2 6 6 C 1.46926 * 126.49271 * 179.97438 * 5 4 3 7 7 O 1.21422 * 119.99383 * 0.02562 * 6 5 4 8 8 C 1.49297 * 120.00270 * 179.97438 * 6 5 4 9 9 O 1.21363 * 120.00351 * 0.02562 * 8 6 5 10 10 N 1.34784 * 120.00068 * 180.02562 * 8 6 5 11 11 C 1.46493 * 119.99864 * 179.72930 * 10 8 6 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47325 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00025 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00011 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00044 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47644 * 89.99599 * 17 15 13 19 19 H 1.48501 * 109.47120 * 209.99938 * 17 15 13 20 20 H 1.48499 * 109.46888 * 329.99550 * 17 15 13 21 21 C 1.41567 * 107.02013 * 0.26006 * 5 4 3 22 22 N 1.30346 * 107.98992 * 359.55755 * 21 5 4 23 23 H 1.08993 * 109.47289 * 60.00382 * 1 2 3 24 24 H 1.09004 * 109.46542 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47190 * 299.99604 * 1 2 3 26 26 H 1.09007 * 109.47039 * 240.00238 * 2 1 3 27 27 H 1.09000 * 109.46965 * 120.00219 * 2 1 3 28 28 H 1.07995 * 126.33330 * 359.97438 * 4 3 2 29 29 H 0.97000 * 119.99339 * 0.02562 * 10 8 6 30 30 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 31 31 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 32 32 H 1.09007 * 109.46593 * 299.99743 * 12 11 10 33 33 H 1.08993 * 109.47372 * 59.99485 * 12 11 10 34 34 H 0.97000 * 120.00268 * 180.02562 * 16 15 13 35 35 H 1.08003 * 126.00405 * 179.74066 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8681 1.9108 0.8922 5 6 3.0709 3.2346 0.5343 6 6 3.9285 4.2056 1.2273 7 8 4.5459 3.8717 2.2181 8 6 4.0418 5.6025 0.7127 9 8 3.4251 5.9362 -0.2779 10 7 4.8289 6.4931 1.3482 11 6 4.9446 7.8621 0.8398 12 6 5.8923 8.6609 1.7368 13 6 6.0109 10.0694 1.2141 14 1 5.4652 10.3652 0.3303 15 6 6.8160 10.9805 1.8643 16 7 6.9198 12.2095 1.4079 17 14 7.7604 10.4688 3.3926 18 1 9.0934 9.9462 2.9991 19 1 7.9328 11.6436 4.2844 20 1 7.0055 9.4098 4.1095 21 6 2.2901 3.4755 -0.6217 22 7 1.6764 2.3680 -0.9310 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.3123 1.4004 1.7339 29 1 5.3220 6.2263 2.1397 30 1 5.3388 7.8403 -0.1763 31 1 3.9617 8.3335 0.8381 32 1 5.4985 8.6828 2.7530 33 1 6.8750 8.1895 1.7381 34 1 7.4865 12.8504 1.8651 35 1 2.2180 4.4117 -1.1554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273014935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:20 Heat of formation + Delta-G solvation = 1.249747 kcal Electronic energy + Delta-G solvation = -18834.549384 eV Core-core repulsion = 15641.671033 eV Total energy + Delta-G solvation = -3192.878352 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.61153 -39.88512 -38.08809 -35.26003 -34.76926 -32.79875 -30.84681 -30.26183 -30.13432 -26.33689 -24.66697 -23.75286 -21.67697 -20.89812 -20.80466 -19.56109 -17.79122 -17.05051 -16.80579 -16.02515 -15.92387 -15.44794 -14.84636 -14.66885 -14.25877 -14.15926 -13.94030 -13.75270 -13.12460 -12.99157 -12.81944 -12.60250 -12.56862 -11.96087 -11.57987 -11.49455 -11.22195 -10.83176 -10.41726 -10.26711 -9.94462 -9.83275 -9.39075 -9.19023 -8.95502 -8.71241 -8.59092 -6.10794 -4.11255 0.73052 1.69911 2.03100 2.53604 3.07018 3.27384 3.35324 3.37085 3.52660 4.04151 4.38602 4.38979 4.44591 4.55777 4.65944 4.81837 4.92192 5.08897 5.20461 5.22339 5.34836 5.54917 5.64737 6.01673 6.15132 6.34392 6.49822 6.51973 6.60820 6.97288 7.15142 7.21374 7.37336 7.65041 7.76593 8.28402 8.44115 8.92939 9.49299 11.02038 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.054932 B = 0.003150 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.603296 B = 8885.656516 C = 9307.372243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 N -0.360 5.360 4 C 0.132 3.868 5 C -0.316 4.316 6 C 0.427 3.573 7 O -0.448 6.448 8 C 0.480 3.520 9 O -0.520 6.520 10 N -0.697 5.697 11 C 0.126 3.874 12 C -0.024 4.024 13 C -0.523 4.523 14 H 0.077 0.923 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.117 3.883 22 N -0.306 5.306 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.188 0.812 29 H 0.406 0.594 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.265 0.735 35 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 -25.932 0.109 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.004 3.996 3 N -0.138 5.138 4 C -0.021 4.021 5 C -0.329 4.329 6 C 0.301 3.699 7 O -0.322 6.322 8 C 0.262 3.738 9 O -0.398 6.398 10 N -0.348 5.348 11 C 0.004 3.996 12 C -0.062 4.062 13 C -0.562 4.562 14 H 0.095 0.905 15 C -0.132 4.132 16 N -0.536 5.536 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.190 1.190 21 C -0.071 4.071 22 N -0.125 5.125 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.205 0.795 29 H 0.241 0.759 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -10.694 -26.394 -0.874 28.491 hybrid contribution 1.404 0.171 1.753 2.252 sum -9.290 -26.223 0.879 27.834 Atomic orbital electron populations 1.22059 0.93282 1.03113 1.03954 1.21852 0.96578 0.76890 1.04284 1.48742 1.33830 1.10850 1.20371 1.23239 0.91144 0.93620 0.94098 1.20508 1.12713 0.94909 1.04776 1.21612 0.78137 0.87613 0.82524 1.90564 1.38579 1.80321 1.22775 1.20503 0.81360 0.86943 0.84952 1.90635 1.44722 1.79244 1.25162 1.46318 1.45185 1.12758 1.30551 1.21685 1.01241 0.77770 0.98857 1.19824 0.94342 0.96369 0.95642 1.20891 1.28749 0.92755 1.13766 0.90525 1.24990 0.96197 0.94745 0.97305 1.69898 1.39231 1.03981 1.40494 0.86764 0.80630 0.78391 0.83404 1.20187 1.21265 1.18964 1.24818 0.91104 0.97320 0.93846 1.77216 1.24660 0.97254 1.13338 0.90768 0.90445 0.91903 0.89154 0.88272 0.79462 0.75904 0.91308 0.91251 0.95793 0.96233 0.92527 0.77288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.09 37.16 0.37 -0.45 16 2 C 0.12 0.63 7.20 -4.04 -0.03 0.60 16 3 N -0.36 -3.38 3.64 -60.68 -0.22 -3.60 16 4 C 0.13 1.28 11.27 -16.41 -0.18 1.09 16 5 C -0.32 -4.01 6.12 -104.97 -0.64 -4.65 16 6 C 0.43 6.10 7.20 -31.46 -0.23 5.88 16 7 O -0.45 -6.70 17.03 5.43 0.09 -6.61 16 8 C 0.48 7.90 7.87 -11.65 -0.09 7.81 16 9 O -0.52 -9.40 14.24 5.49 0.08 -9.33 16 10 N -0.70 -11.87 5.55 -60.78 -0.34 -12.21 16 11 C 0.13 2.52 5.61 -4.04 -0.02 2.49 16 12 C -0.02 -0.55 4.16 -27.88 -0.12 -0.66 16 13 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 14 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 17 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 21 C 0.12 1.52 11.13 -16.91 -0.19 1.33 16 22 N -0.31 -3.75 12.31 30.90 0.38 -3.37 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.39 8.14 -51.92 -0.42 -0.04 16 27 H 0.10 0.23 8.06 -51.93 -0.42 -0.19 16 28 H 0.19 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.41 6.31 7.94 -40.82 -0.32 5.99 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.02 0.54 7.20 -51.93 -0.37 0.16 16 33 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.21 2.78 6.26 -52.48 -0.33 2.45 16 LS Contribution 310.97 15.07 4.69 4.69 Total: -1.00 -33.02 310.97 -5.16 -38.18 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.38 Total: 1.80 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.56 Total: 0.46 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.60 Total: -45.66 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.17 Total: -15.94 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.02 -5.16 -38.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273014935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.426 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds