Wall clock time and date at job start Mon Mar 30 2020 00:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46722 * 2 1 4 4 C 1.34119 * 125.69422 * 125.00185 * 3 2 1 5 5 C 1.38623 * 107.33638 * 179.97438 * 4 3 2 6 6 C 1.46926 * 126.49271 * 179.97438 * 5 4 3 7 7 O 1.21422 * 119.99383 * 0.02562 * 6 5 4 8 8 C 1.49297 * 120.00270 * 179.97438 * 6 5 4 9 9 O 1.21363 * 120.00351 * 0.02562 * 8 6 5 10 10 N 1.34784 * 120.00068 * 180.02562 * 8 6 5 11 11 C 1.46493 * 119.99864 * 179.72930 * 10 8 6 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47325 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00025 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00011 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00044 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47644 * 89.99599 * 17 15 13 19 19 H 1.48501 * 109.47120 * 209.99938 * 17 15 13 20 20 H 1.48499 * 109.46888 * 329.99550 * 17 15 13 21 21 C 1.41567 * 107.02013 * 0.26006 * 5 4 3 22 22 N 1.30346 * 107.98992 * 359.55755 * 21 5 4 23 23 H 1.08993 * 109.47289 * 60.00382 * 1 2 3 24 24 H 1.09004 * 109.46542 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47190 * 299.99604 * 1 2 3 26 26 H 1.09007 * 109.47039 * 240.00238 * 2 1 3 27 27 H 1.09000 * 109.46965 * 120.00219 * 2 1 3 28 28 H 1.07995 * 126.33330 * 359.97438 * 4 3 2 29 29 H 0.97000 * 119.99339 * 0.02562 * 10 8 6 30 30 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 31 31 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 32 32 H 1.09007 * 109.46593 * 299.99743 * 12 11 10 33 33 H 1.08993 * 109.47372 * 59.99485 * 12 11 10 34 34 H 0.97000 * 120.00268 * 180.02562 * 16 15 13 35 35 H 1.08003 * 126.00405 * 179.74066 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8681 1.9108 0.8922 5 6 3.0709 3.2346 0.5343 6 6 3.9285 4.2056 1.2273 7 8 4.5459 3.8717 2.2181 8 6 4.0418 5.6025 0.7127 9 8 3.4251 5.9362 -0.2779 10 7 4.8289 6.4931 1.3482 11 6 4.9446 7.8621 0.8398 12 6 5.8923 8.6609 1.7368 13 6 6.0109 10.0694 1.2141 14 1 5.4652 10.3652 0.3303 15 6 6.8160 10.9805 1.8643 16 7 6.9198 12.2095 1.4079 17 14 7.7604 10.4688 3.3926 18 1 9.0934 9.9462 2.9991 19 1 7.9328 11.6436 4.2844 20 1 7.0055 9.4098 4.1095 21 6 2.2901 3.4755 -0.6217 22 7 1.6764 2.3680 -0.9310 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.3123 1.4004 1.7339 29 1 5.3220 6.2263 2.1397 30 1 5.3388 7.8403 -0.1763 31 1 3.9617 8.3335 0.8381 32 1 5.4985 8.6828 2.7530 33 1 6.8750 8.1895 1.7381 34 1 7.4865 12.8504 1.8651 35 1 2.2180 4.4117 -1.1554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273014935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:19 Heat of formation + Delta-G solvation = -22.812963 kcal Electronic energy + Delta-G solvation = -18835.592821 eV Core-core repulsion = 15641.671033 eV Total energy + Delta-G solvation = -3193.921789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.48805 -41.10418 -39.31207 -36.78658 -35.45704 -34.78662 -32.09297 -31.65829 -30.91432 -27.78266 -25.96950 -24.56040 -23.01393 -22.39973 -21.66246 -20.73866 -19.01089 -18.77849 -18.00046 -17.06795 -16.99133 -16.46770 -16.26688 -15.91422 -15.62179 -15.45758 -15.15365 -14.72946 -14.58737 -14.32180 -13.94539 -13.40816 -13.36798 -13.04262 -12.98817 -12.79712 -12.33965 -12.20389 -12.17346 -11.76785 -11.70976 -11.49106 -10.78067 -10.64018 -10.51020 -10.17541 -9.82161 -8.29185 -6.36007 -0.31017 0.80984 1.36347 1.40429 1.42152 1.44879 1.53541 1.81600 2.37214 2.37494 3.05991 3.22692 3.53013 3.75439 3.99750 4.04821 4.08692 4.30727 4.36110 4.41612 4.42429 4.59570 4.75213 4.80623 4.88924 5.05657 5.23063 5.33986 5.39637 5.43712 5.61027 5.81892 5.92400 6.22191 6.43435 6.52584 6.71592 6.97919 7.28563 8.87234 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.054932 B = 0.003150 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.603296 B = 8885.656516 C = 9307.372243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.352 5.352 4 C 0.157 3.843 5 C -0.344 4.344 6 C 0.439 3.561 7 O -0.455 6.455 8 C 0.478 3.522 9 O -0.540 6.540 10 N -0.694 5.694 11 C 0.141 3.859 12 C -0.017 4.017 13 C -0.536 4.536 14 H 0.034 0.966 15 C 0.006 3.994 16 N -0.949 5.949 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.240 1.240 21 C 0.105 3.895 22 N -0.326 5.326 23 H 0.050 0.950 24 H 0.104 0.896 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.228 0.772 29 H 0.416 0.584 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.034 0.966 34 H 0.268 0.732 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 -29.513 2.202 31.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 N -0.129 5.129 4 C 0.002 3.998 5 C -0.358 4.358 6 C 0.315 3.685 7 O -0.330 6.330 8 C 0.261 3.739 9 O -0.419 6.419 10 N -0.346 5.346 11 C 0.018 3.982 12 C -0.055 4.055 13 C -0.575 4.575 14 H 0.053 0.947 15 C -0.192 4.192 16 N -0.589 5.589 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.212 1.212 20 H -0.163 1.163 21 C -0.082 4.082 22 N -0.146 5.146 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.157 0.843 28 H 0.244 0.756 29 H 0.253 0.747 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.358 -30.024 1.203 31.783 hybrid contribution 1.168 1.203 0.979 1.941 sum -9.190 -28.821 2.182 30.329 Atomic orbital electron populations 1.22040 0.93343 1.04371 1.02346 1.22359 0.96573 0.74751 1.06829 1.49153 1.32889 1.11684 1.19162 1.23759 0.89599 0.92346 0.94099 1.20455 1.13803 0.96143 1.05374 1.21233 0.78430 0.86366 0.82475 1.90560 1.39326 1.80024 1.23100 1.21058 0.80429 0.87931 0.84452 1.90635 1.45298 1.79856 1.26068 1.46103 1.45835 1.11606 1.31061 1.21238 0.99872 0.79246 0.97855 1.19691 0.95751 0.93772 0.96244 1.21222 1.28052 0.95565 1.12623 0.94728 1.26023 0.97392 0.94516 1.01220 1.70061 1.40644 1.05575 1.42598 0.85597 0.79364 0.78616 0.78695 1.19066 1.21196 1.16280 1.24670 0.91831 0.97372 0.94366 1.77159 1.25042 0.97735 1.14657 0.93125 0.87768 0.92717 0.88007 0.84341 0.75572 0.74729 0.92466 0.92451 0.94611 0.94735 0.92330 0.78689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.09 71.98 0.73 -0.49 16 2 C 0.11 0.74 7.20 86.38 0.62 1.36 16 3 N -0.35 -5.66 3.64 -345.89 -1.26 -6.92 16 4 C 0.16 2.52 11.27 84.44 0.95 3.47 16 5 C -0.34 -8.25 6.12 -20.09 -0.12 -8.37 16 6 C 0.44 11.98 7.20 27.53 0.20 12.18 16 7 O -0.46 -12.55 17.03 -3.47 -0.06 -12.61 16 8 C 0.48 15.58 7.87 87.22 0.69 16.26 16 9 O -0.54 -19.95 14.24 -3.29 -0.05 -20.00 16 10 N -0.69 -23.06 5.55 -464.55 -2.58 -25.64 16 11 C 0.14 5.66 5.61 86.38 0.48 6.15 16 12 C -0.02 -0.75 4.16 29.85 0.12 -0.63 16 13 C -0.54 -30.45 9.66 25.60 0.25 -30.21 16 14 H 0.03 2.18 7.99 -2.91 -0.02 2.16 16 15 C 0.01 0.33 5.47 84.65 0.46 0.80 16 16 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 17 Si 0.95 42.82 27.47 68.60 1.88 44.71 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 21 C 0.11 2.74 11.13 85.73 0.95 3.69 16 22 N -0.33 -7.76 12.31 -56.14 -0.69 -8.45 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.14 -0.11 8.06 -2.39 -0.02 -0.13 16 28 H 0.23 1.74 8.06 -2.91 -0.02 1.72 16 29 H 0.42 12.16 7.94 -92.71 -0.74 11.43 16 30 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.04 1.53 7.20 -2.38 -0.02 1.51 16 33 H 0.03 1.45 7.57 -2.39 -0.02 1.44 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.20 5.48 6.26 -2.91 -0.02 5.46 16 Total: -1.00 -73.60 310.97 3.21 -70.39 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.32 Total: 13.11 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.33 Total: 4.22 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -4.23 Total: -99.81 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.11 Total: -32.61 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.88 Total: 44.71 kcal Total: -73.60 3.21 -70.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273014935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.578 kcal (2) G-P(sol) polarization free energy of solvation -73.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds