Wall clock time and date at job start Mon Mar 30 2020 00:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46833 * 2 1 4 4 N 1.46501 * 109.47366 * 173.25091 * 3 2 1 5 5 C 1.36771 * 120.00418 * 262.53382 * 4 3 2 6 6 H 1.07997 * 120.00156 * 202.88630 * 5 4 3 7 7 C 1.39112 * 119.99771 * 22.87909 * 5 4 3 8 8 N 1.31324 * 120.00148 * 14.90807 * 7 5 4 9 9 Si 1.86803 * 120.00309 * 194.91074 * 7 5 4 10 10 H 1.48496 * 109.47285 * 89.99991 * 9 7 5 11 11 H 1.48495 * 109.47144 * 210.00513 * 9 7 5 12 12 H 1.48499 * 109.46493 * 329.99981 * 9 7 5 13 13 C 1.34781 * 119.99711 * 82.52998 * 4 3 2 14 14 O 1.21579 * 119.99847 * 177.36151 * 13 4 3 15 15 C 1.47965 * 120.00258 * 357.63135 * 13 4 3 16 16 C 1.39392 * 120.06710 * 204.45672 * 15 13 4 17 17 N 1.32130 * 120.00405 * 180.02562 * 16 15 13 18 18 C 1.32004 * 120.15396 * 0.02562 * 17 16 15 19 19 C 1.39433 * 120.13936 * 0.02562 * 18 17 16 20 20 O 1.35664 * 120.00546 * 179.97438 * 19 18 17 21 21 C 1.42906 * 117.00042 * 185.27139 * 20 19 18 22 22 N 1.32196 * 119.98900 * 359.67904 * 19 18 17 23 23 H 1.09004 * 109.47478 * 312.37052 * 1 2 3 24 24 H 1.09001 * 109.47818 * 72.37452 * 1 2 3 25 25 H 1.09003 * 109.47003 * 192.37769 * 1 2 3 26 26 H 1.09002 * 109.47068 * 240.00634 * 2 1 3 27 27 H 1.08997 * 109.47554 * 119.99948 * 2 1 3 28 28 H 1.08996 * 109.47178 * 53.24957 * 3 2 1 29 29 H 1.09005 * 109.47228 * 293.25096 * 3 2 1 30 30 H 0.97000 * 120.00414 * 179.97438 * 8 7 5 31 31 H 1.07999 * 119.99579 * 359.97438 * 16 15 13 32 32 H 1.08001 * 119.93145 * 180.02562 * 18 17 16 33 33 H 1.09003 * 109.46901 * 187.66035 * 21 20 19 34 34 H 1.08998 * 109.46719 * 307.66398 * 21 20 19 35 35 H 1.09004 * 109.46806 * 67.66337 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.4959 1.4459 0.1623 5 6 4.0458 1.6472 1.3983 6 1 5.0577 2.0142 1.4859 7 6 3.3016 1.3794 2.5427 8 7 2.2003 0.6689 2.4585 9 14 3.8686 2.0303 4.1993 10 1 3.2793 3.3735 4.4314 11 1 3.4272 1.1039 5.2726 12 1 5.3501 2.1310 4.2107 13 6 4.2935 1.2504 -0.9064 14 8 5.5017 1.3009 -0.7805 15 6 3.6986 0.9804 -2.2341 16 6 4.4316 0.2948 -3.2013 17 7 3.8994 0.0548 -4.3867 18 6 2.6739 0.4634 -4.6583 19 6 1.9356 1.1507 -3.6957 20 8 0.6766 1.5699 -3.9780 21 6 0.0214 2.3673 -2.9896 22 7 2.4604 1.3888 -2.5060 23 1 -0.3634 0.6926 0.7592 24 1 -0.3635 0.3112 -0.9794 25 1 -0.3633 -1.0038 0.2203 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.5813 1.9900 0.8234 29 1 1.7785 1.9204 -0.9442 30 1 1.6816 0.4818 3.2565 31 1 5.4349 -0.0396 -2.9822 32 1 2.2423 0.2649 -5.6282 33 1 -1.0188 2.5203 -3.2773 34 1 0.0610 1.8576 -2.0269 35 1 0.5223 3.3323 -2.9108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276927099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:07 Heat of formation + Delta-G solvation = 2.593071 kcal Electronic energy + Delta-G solvation = -21056.276200 eV Core-core repulsion = 17863.456100 eV Total energy + Delta-G solvation = -3192.820101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01346 -38.62169 -37.88925 -35.42434 -33.81112 -32.32515 -31.44967 -30.63544 -27.42961 -26.17827 -25.28062 -23.87410 -23.26569 -20.76684 -20.21128 -17.93555 -17.64629 -16.84711 -16.51104 -16.11520 -15.68219 -14.92835 -14.42864 -14.27058 -13.99433 -13.74140 -13.37560 -13.11576 -12.60478 -12.30382 -11.98769 -11.88772 -11.63016 -11.44819 -11.23953 -11.04763 -10.72721 -10.54630 -10.43041 -10.38581 -10.17618 -9.69431 -9.24095 -8.97913 -8.40446 -8.31644 -7.69110 -6.48427 -4.02606 0.92500 1.45345 3.04489 3.12128 3.14564 3.19415 3.56060 3.91007 4.23549 4.32957 4.56394 4.76976 4.94029 5.03251 5.32746 5.41853 5.53908 5.62306 5.72111 5.78657 6.00506 6.04464 6.32239 6.43097 6.56879 6.75997 6.89515 6.92369 7.19045 7.27331 7.31278 7.49873 7.80619 7.91210 8.05548 8.35832 8.97447 9.19474 9.80960 10.41959 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.007522 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.623674 B = 3721.686676 C = 4498.772050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C 0.105 3.895 4 N -0.398 5.398 5 C -0.294 4.294 6 H 0.106 0.894 7 C 0.032 3.968 8 N -0.846 5.846 9 Si 0.932 3.068 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.468 3.532 14 O -0.587 6.587 15 C 0.120 3.880 16 C 0.039 3.961 17 N -0.407 5.407 18 C 0.023 3.977 19 C 0.267 3.733 20 O -0.304 6.304 21 C 0.027 3.973 22 N -0.472 5.472 23 H 0.053 0.947 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.017 0.983 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.272 0.728 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 0.996 -6.821 9.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C -0.018 4.018 4 N -0.111 5.111 5 C -0.423 4.423 6 H 0.124 0.876 7 C -0.174 4.174 8 N -0.483 5.483 9 Si 0.758 3.242 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.256 3.744 14 O -0.473 6.473 15 C -0.020 4.020 16 C -0.121 4.121 17 N -0.121 5.121 18 C -0.141 4.141 19 C 0.084 3.916 20 O -0.209 6.209 21 C -0.068 4.068 22 N -0.205 5.205 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.194 0.806 32 H 0.187 0.813 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.507 0.929 -6.792 9.452 hybrid contribution -0.180 0.288 1.080 1.132 sum -6.687 1.217 -5.713 8.879 Atomic orbital electron populations 1.21578 0.97506 1.00356 0.99467 1.21964 0.94003 0.98346 1.01816 1.22151 0.80022 0.97605 1.02038 1.43809 1.06033 1.54855 1.06409 1.19942 1.01323 1.40012 0.81060 0.87586 1.25520 0.96198 0.95438 1.00245 1.70013 1.15336 1.32829 1.30131 0.85824 0.79579 0.78600 0.80222 1.20104 1.20706 1.19070 1.17374 0.86566 0.87504 0.82946 1.90642 1.13252 1.58949 1.84420 1.22535 0.88404 0.93830 0.97252 1.23433 1.01773 0.98268 0.88613 1.68440 1.09479 1.14809 1.19373 1.22818 0.91007 1.00299 0.99963 1.21159 0.86650 0.92913 0.90896 1.86220 1.23672 1.66446 1.44590 1.23134 0.96435 0.94592 0.92672 1.68556 1.12632 1.22423 1.16843 0.92838 0.94925 0.94219 0.96392 0.87282 0.90328 0.88956 0.91765 0.80570 0.81342 0.88676 0.90746 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.92 37.15 0.37 -1.92 16 2 C -0.12 -2.60 5.25 -26.73 -0.14 -2.74 16 3 C 0.11 2.32 4.14 -4.04 -0.02 2.30 16 4 N -0.40 -10.03 2.62 -115.85 -0.30 -10.33 16 5 C -0.29 -7.78 9.27 -15.02 -0.14 -7.92 16 6 H 0.11 2.93 7.41 -52.49 -0.39 2.54 16 7 C 0.03 0.78 4.99 -17.44 -0.09 0.70 16 8 N -0.85 -20.33 8.30 55.50 0.46 -19.87 16 9 Si 0.93 19.31 29.58 -169.99 -5.03 14.28 16 10 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 C 0.47 11.72 7.46 -12.27 -0.09 11.62 16 14 O -0.59 -16.18 16.28 5.30 0.09 -16.09 16 15 C 0.12 2.53 5.79 -82.87 -0.48 2.05 16 16 C 0.04 0.75 10.76 -16.99 -0.18 0.57 16 17 N -0.41 -7.04 10.48 -12.56 -0.13 -7.17 16 18 C 0.02 0.35 11.18 -17.03 -0.19 0.16 16 19 C 0.27 4.45 7.49 -16.95 -0.13 4.33 16 20 O -0.30 -4.42 10.49 -18.69 -0.20 -4.61 16 21 C 0.03 0.34 10.42 101.05 1.05 1.39 16 22 N -0.47 -9.00 4.87 -9.70 -0.05 -9.05 16 23 H 0.05 0.93 8.02 -51.93 -0.42 0.51 16 24 H 0.03 0.51 6.34 -51.93 -0.33 0.18 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.02 0.38 7.04 -51.93 -0.37 0.02 16 27 H 0.11 2.64 5.76 -51.93 -0.30 2.34 16 28 H 0.08 1.83 6.44 -51.93 -0.33 1.50 16 29 H 0.09 1.91 3.51 -53.27 -0.19 1.72 16 30 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 31 H 0.18 3.23 7.84 -52.49 -0.41 2.82 16 32 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.04 4.83 -51.93 -0.25 0.79 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 288.60 15.07 4.35 4.35 Total: -1.00 -28.31 288.60 -4.65 -32.96 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -3.81 Total: 5.00 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -0.03 Total: 10.54 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.02 Total: -46.42 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.11 Total: -20.71 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.31 -4.65 -32.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276927099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.553 kcal (2) G-P(sol) polarization free energy of solvation -28.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds