Wall clock time and date at job start Mon Mar 30 2020 00:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47590 * 2 1 4 4 C 1.50706 * 109.47200 * 119.99934 * 2 1 3 5 5 H 1.07992 * 119.99984 * 119.99882 * 4 2 1 6 6 C 1.37873 * 119.99481 * 300.27287 * 4 2 1 7 7 N 1.31514 * 119.99764 * 179.72016 * 6 4 2 8 8 Si 1.86797 * 120.00305 * 359.72850 * 6 4 2 9 9 H 1.48498 * 109.47571 * 89.99742 * 8 6 4 10 10 H 1.48502 * 109.46959 * 209.99840 * 8 6 4 11 11 H 1.48496 * 109.47153 * 329.99568 * 8 6 4 12 12 N 1.46502 * 109.47191 * 239.99695 * 2 1 3 13 13 C 1.30039 * 119.99956 * 128.51303 * 12 2 1 14 14 O 1.35247 * 120.00306 * 190.21721 * 13 12 2 15 15 C 1.47931 * 120.00070 * 10.22001 * 13 12 2 16 16 C 1.41195 * 125.93983 * 24.53221 * 15 13 12 17 17 C 1.34905 * 107.70751 * 179.82778 * 16 15 13 18 18 N 1.36362 * 107.89579 * 0.48975 * 17 16 15 19 19 N 1.32032 * 125.93581 * 204.84737 * 15 13 12 20 20 C 1.46717 * 123.62783 * 179.56790 * 18 17 16 21 21 C 1.53529 * 107.96347 * 343.07075 * 20 18 17 22 22 C 1.53218 * 109.30802 * 47.25233 * 21 20 18 23 23 O 1.36018 * 128.65508 * 180.33011 * 17 16 15 24 24 H 1.08997 * 109.47287 * 300.00477 * 1 2 3 25 25 H 1.09003 * 109.46782 * 60.00341 * 1 2 3 26 26 H 1.08996 * 109.47192 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00110 * 179.97438 * 7 6 4 28 28 H 0.96692 * 114.00436 * 180.02562 * 14 13 12 29 29 H 1.08002 * 126.14937 * 359.97438 * 16 15 13 30 30 H 1.08994 * 109.76282 * 102.69192 * 20 18 17 31 31 H 1.09003 * 109.76209 * 223.45746 * 20 18 17 32 32 H 1.09009 * 109.49348 * 167.20093 * 21 20 18 33 33 H 1.08993 * 109.49859 * 287.29609 * 21 20 18 34 34 H 1.09003 * 109.50677 * 55.35437 * 22 21 20 35 35 H 1.08997 * 109.50562 * 175.47583 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6946 -0.2426 2.4827 7 7 2.1284 -0.8657 3.5565 8 14 0.6206 1.2762 2.6540 9 1 -0.8075 0.8709 2.6928 10 1 0.9673 1.9884 3.9101 11 1 0.8483 2.1767 1.4954 12 7 2.0183 -0.6907 -1.1961 13 6 2.8962 -0.1172 -1.9652 14 8 3.1939 -0.6550 -3.1699 15 6 3.5694 1.1234 -1.5224 16 6 3.7532 1.5341 -0.1841 17 6 4.4110 2.7118 -0.2029 18 7 4.6303 3.0484 -1.5060 19 7 4.0976 2.0419 -2.3101 20 6 5.3154 4.2767 -1.9237 21 6 5.3279 5.2414 -0.7294 22 6 5.7794 4.4878 0.5259 23 8 4.8104 3.4788 0.8470 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8911 -0.5364 4.4375 28 1 3.8571 -0.1590 -3.6690 29 1 3.4280 1.0002 0.6966 30 1 6.3381 4.0453 -2.2213 31 1 4.7817 4.7308 -2.7586 32 1 6.0188 6.0603 -0.9304 33 1 4.3256 5.6404 -0.5735 34 1 6.7457 4.0186 0.3409 35 1 5.8668 5.1863 1.3581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330945756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:59 Heat of formation + Delta-G solvation = 47.861198 kcal Electronic energy + Delta-G solvation = -20659.786621 eV Core-core repulsion = 17468.929494 eV Total energy + Delta-G solvation = -3190.857127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.60546 -38.85260 -37.47544 -35.61662 -34.54406 -32.37959 -30.78810 -29.69559 -29.14958 -26.38194 -25.09291 -23.52578 -22.79218 -21.17710 -19.88008 -19.00770 -18.18693 -16.72027 -16.51557 -16.21249 -15.60552 -15.36720 -14.98083 -14.85907 -14.50035 -14.06460 -13.58977 -13.30074 -12.81481 -12.72421 -12.46910 -12.14580 -11.85400 -11.61422 -11.47573 -11.30490 -11.04948 -10.73698 -10.54211 -10.34770 -9.65807 -9.51085 -9.02295 -8.64122 -8.47588 -7.99132 -7.85620 -6.10028 -4.09781 1.68568 2.27473 2.59087 3.09936 3.27707 3.38332 3.39845 3.68370 3.98174 4.06306 4.19851 4.37830 4.51621 4.57542 4.81806 4.96248 5.04961 5.20888 5.21638 5.46629 5.60633 5.67255 6.18217 6.27269 6.34466 6.42508 6.62366 6.77576 6.94380 7.00967 7.28841 7.48285 7.58208 7.67646 7.98518 8.42092 8.90116 9.03250 9.50236 11.02149 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.008674 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.229556 B = 3227.301648 C = 4355.736982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.160 3.840 3 H 0.040 0.960 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.077 3.923 7 N -0.890 5.890 8 Si 0.879 3.121 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.264 1.264 12 N -0.475 5.475 13 C 0.386 3.614 14 O -0.468 6.468 15 C 0.060 3.940 16 C -0.231 4.231 17 C 0.250 3.750 18 N -0.404 5.404 19 N -0.277 5.277 20 C 0.132 3.868 21 C -0.175 4.175 22 C 0.049 3.951 23 O -0.282 6.282 24 H 0.046 0.954 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.266 0.734 28 H 0.401 0.599 29 H 0.198 0.802 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 14.770 -9.340 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.052 3.948 3 H 0.057 0.943 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.708 3.292 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.205 5.205 13 C 0.154 3.846 14 O -0.262 6.262 15 C -0.108 4.108 16 C -0.260 4.260 17 C 0.085 3.915 18 N -0.201 5.201 19 N -0.106 5.106 20 C 0.011 3.989 21 C -0.214 4.214 22 C -0.027 4.027 23 O -0.189 6.189 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.253 0.747 29 H 0.215 0.785 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.657 14.036 -9.818 18.763 hybrid contribution 0.251 1.961 0.902 2.173 sum 7.908 15.996 -8.916 19.948 Atomic orbital electron populations 1.22060 0.97473 1.01647 0.98370 1.20345 0.92075 0.94737 0.87637 0.94291 1.20871 1.32157 1.14109 0.87433 0.89959 1.24882 0.95487 0.96599 0.95612 1.69869 1.45077 1.39898 0.97931 0.86977 0.80961 0.83907 0.77306 1.20294 1.22166 1.18918 1.71521 1.11802 1.29335 1.07849 1.20241 0.93740 0.84135 0.86480 1.84677 1.61308 1.53726 1.26515 1.22341 0.99538 0.96356 0.92583 1.21483 1.09284 0.95523 0.99719 1.19564 0.99663 0.93047 0.79189 1.49124 1.48743 1.18718 1.03546 1.77348 1.18477 0.98270 1.16543 1.21825 0.97556 0.81193 0.98290 1.22635 1.04991 0.98987 0.94767 1.23061 0.91101 0.89854 0.98688 1.86717 1.58271 1.45756 1.28174 0.93598 0.95185 0.91880 0.92390 0.74732 0.78542 0.89611 0.88381 0.87448 0.89355 0.91094 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 9.00 37.16 0.33 -2.94 16 2 C 0.16 4.07 1.73 -69.08 -0.12 3.95 16 3 H 0.04 1.01 3.31 -51.93 -0.17 0.84 16 4 C -0.51 -14.57 7.73 -34.44 -0.27 -14.84 16 5 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 6 C 0.08 2.23 5.43 -17.82 -0.10 2.13 16 7 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 8 Si 0.88 22.00 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.74 6.86 56.52 0.39 -6.35 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 12 N -0.48 -11.64 10.20 -53.88 -0.55 -12.19 16 13 C 0.39 8.18 8.17 -14.34 -0.12 8.07 16 14 O -0.47 -8.33 13.63 -17.43 -0.24 -8.57 16 15 C 0.06 1.20 6.41 -82.69 -0.53 0.67 16 16 C -0.23 -5.01 8.27 -39.64 -0.33 -5.34 16 17 C 0.25 4.59 7.57 -16.72 -0.13 4.46 16 18 N -0.40 -6.29 4.08 -60.94 -0.25 -6.54 16 19 N -0.28 -4.84 12.36 33.45 0.41 -4.43 16 20 C 0.13 1.27 7.41 -3.65 -0.03 1.24 16 21 C -0.18 -1.33 6.16 -26.34 -0.16 -1.49 16 22 C 0.05 0.48 7.00 37.27 0.26 0.74 16 23 O -0.28 -4.61 10.65 -19.80 -0.21 -4.82 16 24 H 0.05 1.09 3.25 -51.93 -0.17 0.92 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.40 5.14 8.56 45.56 0.39 5.53 16 29 H 0.20 4.91 4.85 -52.49 -0.25 4.66 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.11 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 286.08 15.07 4.31 4.31 Total: -1.00 -34.85 286.08 -4.26 -39.11 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -3.19 Total: 4.87 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.18 Total: -3.35 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.39 Total: -49.40 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.45 Total: -13.39 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.85 -4.26 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330945756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.969 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds