Wall clock time and date at job start Mon Mar 30 2020 00:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47590 * 2 1 4 4 C 1.50706 * 109.47200 * 119.99934 * 2 1 3 5 5 H 1.07992 * 119.99984 * 119.99882 * 4 2 1 6 6 C 1.37873 * 119.99481 * 300.27287 * 4 2 1 7 7 N 1.31514 * 119.99764 * 179.72016 * 6 4 2 8 8 Si 1.86797 * 120.00305 * 359.72850 * 6 4 2 9 9 H 1.48498 * 109.47571 * 89.99742 * 8 6 4 10 10 H 1.48502 * 109.46959 * 209.99840 * 8 6 4 11 11 H 1.48496 * 109.47153 * 329.99568 * 8 6 4 12 12 N 1.46502 * 109.47191 * 239.99695 * 2 1 3 13 13 C 1.30039 * 119.99956 * 128.51303 * 12 2 1 14 14 O 1.35247 * 120.00306 * 190.21721 * 13 12 2 15 15 C 1.47931 * 120.00070 * 10.22001 * 13 12 2 16 16 C 1.41195 * 125.93983 * 24.53221 * 15 13 12 17 17 C 1.34905 * 107.70751 * 179.82778 * 16 15 13 18 18 N 1.36362 * 107.89579 * 0.48975 * 17 16 15 19 19 N 1.32032 * 125.93581 * 204.84737 * 15 13 12 20 20 C 1.46717 * 123.62783 * 179.56790 * 18 17 16 21 21 C 1.53529 * 107.96347 * 343.07075 * 20 18 17 22 22 C 1.53218 * 109.30802 * 47.25233 * 21 20 18 23 23 O 1.36018 * 128.65508 * 180.33011 * 17 16 15 24 24 H 1.08997 * 109.47287 * 300.00477 * 1 2 3 25 25 H 1.09003 * 109.46782 * 60.00341 * 1 2 3 26 26 H 1.08996 * 109.47192 * 180.02562 * 1 2 3 27 27 H 0.97000 * 120.00110 * 179.97438 * 7 6 4 28 28 H 0.96692 * 114.00436 * 180.02562 * 14 13 12 29 29 H 1.08002 * 126.14937 * 359.97438 * 16 15 13 30 30 H 1.08994 * 109.76282 * 102.69192 * 20 18 17 31 31 H 1.09003 * 109.76209 * 223.45746 * 20 18 17 32 32 H 1.09009 * 109.49348 * 167.20093 * 21 20 18 33 33 H 1.08993 * 109.49859 * 287.29609 * 21 20 18 34 34 H 1.09003 * 109.50677 * 55.35437 * 22 21 20 35 35 H 1.08997 * 109.50562 * 175.47583 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6946 -0.2426 2.4827 7 7 2.1284 -0.8657 3.5565 8 14 0.6206 1.2762 2.6540 9 1 -0.8075 0.8709 2.6928 10 1 0.9673 1.9884 3.9101 11 1 0.8483 2.1767 1.4954 12 7 2.0183 -0.6907 -1.1961 13 6 2.8962 -0.1172 -1.9652 14 8 3.1939 -0.6550 -3.1699 15 6 3.5694 1.1234 -1.5224 16 6 3.7532 1.5341 -0.1841 17 6 4.4110 2.7118 -0.2029 18 7 4.6303 3.0484 -1.5060 19 7 4.0976 2.0419 -2.3101 20 6 5.3154 4.2767 -1.9237 21 6 5.3279 5.2414 -0.7294 22 6 5.7794 4.4878 0.5259 23 8 4.8104 3.4788 0.8470 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8911 -0.5364 4.4375 28 1 3.8571 -0.1590 -3.6690 29 1 3.4280 1.0002 0.6966 30 1 6.3381 4.0453 -2.2213 31 1 4.7817 4.7308 -2.7586 32 1 6.0188 6.0603 -0.9304 33 1 4.3256 5.6404 -0.5735 34 1 6.7457 4.0186 0.3409 35 1 5.8668 5.1863 1.3581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330945756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:59 Heat of formation + Delta-G solvation = 14.858061 kcal Electronic energy + Delta-G solvation = -20661.217744 eV Core-core repulsion = 17468.929494 eV Total energy + Delta-G solvation = -3192.288251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.91879 -40.18586 -38.89233 -37.37650 -35.56856 -34.42907 -32.22392 -31.34286 -30.52010 -27.36528 -27.17777 -24.84449 -24.25373 -22.76358 -20.95462 -20.61301 -19.59303 -18.74251 -17.72670 -17.41616 -17.22185 -16.64248 -16.61932 -16.01137 -15.78256 -15.33392 -15.10408 -14.91849 -14.51139 -14.27242 -14.01449 -13.52092 -13.40985 -13.11369 -12.73011 -12.67187 -12.36631 -12.21155 -12.12613 -11.86112 -11.61577 -11.51790 -10.80946 -10.50367 -10.19941 -9.65145 -9.39661 -8.32612 -6.36423 0.22367 1.05434 1.11907 1.27747 1.33588 1.43436 1.94072 2.11531 2.28283 2.53195 2.90901 3.01974 3.41412 3.55315 3.86323 3.96825 4.19457 4.29225 4.39162 4.51964 4.53552 4.56153 4.59129 4.72012 4.80940 4.90638 4.92387 5.10113 5.16175 5.42213 5.44541 5.59360 6.11768 6.23518 6.26236 6.52526 6.65533 7.18034 7.35735 8.84127 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.008674 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.229556 B = 3227.301648 C = 4355.736982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 H 0.043 0.957 4 C -0.506 4.506 5 H 0.029 0.971 6 C 0.028 3.972 7 N -0.938 5.938 8 Si 0.940 3.060 9 H -0.260 1.260 10 H -0.290 1.290 11 H -0.253 1.253 12 N -0.528 5.528 13 C 0.408 3.592 14 O -0.462 6.462 15 C 0.041 3.959 16 C -0.279 4.279 17 C 0.264 3.736 18 N -0.385 5.385 19 N -0.259 5.259 20 C 0.114 3.886 21 C -0.164 4.164 22 C 0.031 3.969 23 O -0.308 6.308 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.270 0.730 28 H 0.423 0.577 29 H 0.156 0.844 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.186 18.612 -11.214 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.060 0.940 4 C -0.545 4.545 5 H 0.048 0.952 6 C -0.171 4.171 7 N -0.578 5.578 8 Si 0.766 3.234 9 H -0.186 1.186 10 H -0.217 1.217 11 H -0.177 1.177 12 N -0.260 5.260 13 C 0.177 3.823 14 O -0.260 6.260 15 C -0.125 4.125 16 C -0.309 4.309 17 C 0.097 3.903 18 N -0.184 5.184 19 N -0.089 5.089 20 C -0.004 4.004 21 C -0.202 4.202 22 C -0.043 4.043 23 O -0.215 6.215 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.279 0.721 29 H 0.174 0.826 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.176 0.824 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.540 17.907 -11.748 23.057 hybrid contribution 0.284 0.880 1.363 1.647 sum 8.824 18.788 -10.385 23.209 Atomic orbital electron populations 1.22014 0.96379 1.01571 0.99481 1.20117 0.92931 0.94352 0.86681 0.93980 1.20919 1.31310 1.12501 0.89723 0.95215 1.25637 0.96843 0.99698 0.94935 1.70008 1.47057 1.42087 0.98609 0.85982 0.79620 0.80157 0.77622 1.18618 1.21686 1.17706 1.71451 1.15085 1.30647 1.08770 1.20337 0.91747 0.83930 0.86301 1.84656 1.61991 1.53988 1.25329 1.21977 1.01295 0.96910 0.92339 1.21103 1.12814 0.97810 0.99173 1.19310 0.98110 0.92187 0.80714 1.49589 1.47113 1.19320 1.02372 1.77255 1.17447 0.98063 1.16185 1.22552 0.98724 0.79110 0.99990 1.22681 1.05858 0.99215 0.92432 1.23644 0.90200 0.89175 1.01306 1.86710 1.59713 1.46875 1.28250 0.93634 0.92680 0.92637 0.92123 0.72135 0.82624 0.86723 0.86207 0.82432 0.90162 0.89778 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.51 9.00 71.98 0.65 -5.86 16 2 C 0.17 8.78 1.73 44.25 0.08 8.86 16 3 H 0.04 2.22 3.31 -2.39 -0.01 2.21 16 4 C -0.51 -30.83 7.73 25.60 0.20 -30.63 16 5 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 6 C 0.03 1.66 5.43 84.65 0.46 2.12 16 7 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 8 Si 0.94 46.19 24.37 68.60 1.67 47.86 16 9 H -0.26 -12.07 6.86 99.48 0.68 -11.39 16 10 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.25 -11.87 6.54 99.48 0.65 -11.22 16 12 N -0.53 -26.69 10.20 -438.57 -4.47 -31.16 16 13 C 0.41 17.47 8.17 87.53 0.72 18.18 16 14 O -0.46 -16.08 13.63 -85.30 -1.16 -17.25 16 15 C 0.04 1.67 6.41 42.41 0.27 1.94 16 16 C -0.28 -12.37 8.27 22.23 0.18 -12.18 16 17 C 0.26 9.42 7.57 83.22 0.63 10.05 16 18 N -0.39 -10.91 4.08 -457.21 -1.87 -12.77 16 19 N -0.26 -8.51 12.36 -48.10 -0.59 -9.11 16 20 C 0.11 1.63 7.41 86.52 0.64 2.27 16 21 C -0.16 -1.64 6.16 30.84 0.19 -1.45 16 22 C 0.03 0.48 7.00 72.06 0.50 0.99 16 23 O -0.31 -9.63 10.65 -93.76 -1.00 -10.63 16 24 H 0.05 2.12 3.25 -2.39 -0.01 2.12 16 25 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.05 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 28 H 0.42 10.06 8.56 -74.06 -0.63 9.43 16 29 H 0.16 8.27 4.85 -2.91 -0.01 8.26 16 30 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.16 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -81.68 286.08 -2.18 -83.85 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.43 Total: 14.30 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 4.52 Total: -5.72 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -6.63 Total: -112.42 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -2.16 Total: -27.87 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -81.68 -2.18 -83.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330945756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.711 kcal (2) G-P(sol) polarization free energy of solvation -81.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds