Wall clock time and date at job start Mon Mar 30 2020 00:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 N 1.46500 * 109.46762 * 180.02562 * 3 2 1 5 5 C 1.35914 * 119.99827 * 264.37106 * 4 3 2 6 6 H 1.08000 * 119.99902 * 132.73293 * 5 4 3 7 7 C 1.39769 * 119.99907 * 312.73101 * 5 4 3 8 8 N 1.30896 * 120.00506 * 2.94069 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 182.94087 * 7 5 4 10 10 H 1.48500 * 109.47164 * 59.99822 * 9 7 5 11 11 H 1.48500 * 109.47291 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46693 * 300.00069 * 9 7 5 13 13 C 1.34778 * 120.00488 * 84.38035 * 4 3 2 14 14 O 1.21546 * 119.99664 * 5.00220 * 13 4 3 15 15 C 1.48556 * 120.00434 * 185.01076 * 13 4 3 16 16 O 1.21552 * 119.99925 * 354.45012 * 15 13 4 17 17 C 1.47073 * 120.00200 * 174.44873 * 15 13 4 18 18 C 1.41503 * 126.47114 * 359.95357 * 17 15 13 19 19 N 1.30377 * 108.00910 * 180.02562 * 18 17 15 20 20 N 1.39921 * 109.01757 * 359.75227 * 19 18 17 21 21 C 1.46495 * 125.71740 * 180.29387 * 20 19 18 22 22 C 1.34212 * 108.56381 * 0.42204 * 20 19 18 23 23 H 1.08996 * 109.46850 * 299.99868 * 1 2 3 24 24 H 1.08999 * 109.46972 * 60.00280 * 1 2 3 25 25 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47087 * 239.99817 * 2 1 3 27 27 H 1.09002 * 109.47385 * 120.00358 * 2 1 3 28 28 H 1.08996 * 109.47153 * 60.00318 * 3 2 1 29 29 H 1.08999 * 109.46971 * 299.99721 * 3 2 1 30 30 H 0.96999 * 120.00639 * 179.97438 * 8 7 5 31 31 H 1.07996 * 125.99637 * 0.06032 * 18 17 15 32 32 H 1.08995 * 109.47220 * 270.15389 * 21 20 19 33 33 H 1.09005 * 109.46909 * 30.15154 * 21 20 19 34 34 H 1.09000 * 109.47113 * 150.15036 * 21 20 19 35 35 H 1.08002 * 126.31826 * 179.84723 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1850 1.5576 1.1705 6 1 5.0047 0.8886 1.3870 7 6 3.8235 2.5420 2.0946 8 7 2.7942 3.3153 1.8582 9 14 4.8094 2.7541 3.6670 10 1 6.2179 3.0802 3.3280 11 1 4.2256 3.8567 4.4724 12 1 4.7681 1.4935 4.4509 13 6 4.1785 1.3282 -1.1625 14 8 3.5738 1.3169 -2.2168 15 6 5.6598 1.2161 -1.1545 16 8 6.2722 1.3284 -0.1106 17 6 6.3853 0.9692 -2.4098 18 6 5.8141 0.8159 -3.6953 19 7 6.7820 0.6121 -4.5447 20 7 8.0016 0.6299 -3.8592 21 6 9.3241 0.4449 -4.4616 22 6 7.7566 0.8420 -2.5568 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 2.5431 3.9982 2.4997 31 1 4.7613 0.8606 -3.9315 32 1 9.5792 -0.6148 -4.4597 33 1 9.3108 0.8135 -5.4874 34 1 10.0661 0.9983 -3.8862 35 1 8.4932 0.9063 -1.7695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338868523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:17 Heat of formation + Delta-G solvation = -1.256404 kcal Electronic energy + Delta-G solvation = -20130.685823 eV Core-core repulsion = 16937.698797 eV Total energy + Delta-G solvation = -3192.987026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.29994 -40.87159 -38.82114 -37.11075 -34.55279 -34.29876 -33.16111 -31.36125 -28.56393 -27.75418 -26.90269 -24.93855 -22.88266 -22.04904 -21.57453 -20.76738 -19.33461 -17.81105 -17.60840 -16.80318 -16.54325 -16.38634 -15.90542 -15.63084 -15.61268 -15.13719 -14.88727 -14.56644 -13.88705 -13.83352 -13.43531 -13.39181 -13.31229 -13.25990 -12.97243 -12.67209 -12.52295 -12.26154 -12.01630 -11.92571 -11.49774 -11.48013 -10.96222 -10.53085 -9.97598 -9.69082 -9.36160 -8.27955 -6.12283 0.04587 0.89658 1.44784 1.47143 1.51650 1.55945 1.71619 2.27782 2.59551 2.71717 3.07220 3.60983 3.86085 3.99150 4.21188 4.23496 4.34613 4.37454 4.45551 4.58012 4.64132 4.71480 4.79901 4.87172 5.00079 5.11885 5.27067 5.37608 5.47474 5.49099 5.64492 5.91676 6.04128 6.28911 6.51965 6.69147 7.05869 7.45932 7.88020 8.68827 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.018925 B = 0.006531 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.177095 B = 4286.045919 C = 5497.621700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.104 3.896 4 N -0.407 5.407 5 C -0.343 4.343 6 H 0.099 0.901 7 C 0.006 3.994 8 N -0.890 5.890 9 Si 0.987 3.013 10 H -0.273 1.273 11 H -0.275 1.275 12 H -0.261 1.261 13 C 0.411 3.589 14 O -0.604 6.604 15 C 0.416 3.584 16 O -0.451 6.451 17 C -0.335 4.335 18 C 0.104 3.896 19 N -0.329 5.329 20 N -0.358 5.358 21 C 0.086 3.914 22 C 0.141 3.859 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.105 0.895 29 H 0.038 0.962 30 H 0.276 0.724 31 H 0.194 0.806 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.101 -5.126 -5.264 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C -0.019 4.019 4 N -0.124 5.124 5 C -0.472 4.472 6 H 0.117 0.883 7 C -0.197 4.197 8 N -0.527 5.527 9 Si 0.810 3.190 10 H -0.198 1.198 11 H -0.200 1.200 12 H -0.185 1.185 13 C 0.200 3.800 14 O -0.493 6.493 15 C 0.292 3.708 16 O -0.325 6.325 17 C -0.348 4.348 18 C -0.082 4.082 19 N -0.150 5.150 20 N -0.136 5.136 21 C -0.053 4.053 22 C -0.013 4.013 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.210 0.790 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 9.464 -5.149 -6.431 12.547 hybrid contribution -0.197 0.516 1.457 1.558 sum 9.267 -4.632 -4.974 11.493 Atomic orbital electron populations 1.21590 0.93266 1.02372 1.01911 1.21735 0.97598 0.96525 1.00462 1.21776 0.80663 0.96636 1.02809 1.43531 1.05933 1.57686 1.05277 1.19951 1.15790 1.16433 0.94983 0.88323 1.26470 0.96588 0.93902 1.02765 1.69577 1.25569 1.19762 1.37798 0.85096 0.78426 0.78514 0.76967 1.19810 1.20025 1.18515 1.20951 0.90139 0.84474 0.84454 1.90469 1.70251 1.57583 1.30956 1.21333 0.88735 0.73437 0.87334 1.90526 1.70873 1.37017 1.34075 1.20728 0.94260 1.24583 0.95245 1.24552 0.99869 0.93886 0.89922 1.77101 0.89812 1.26786 1.21321 1.48880 1.07973 1.51693 1.05082 1.22456 0.76414 1.05090 1.01315 1.23546 0.96228 0.93347 0.88186 0.92454 0.92704 0.90906 0.93929 0.92822 0.87684 0.94299 0.91337 0.78967 0.88479 0.88233 0.85961 0.76305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 9.91 71.98 0.71 -3.64 16 2 C -0.12 -5.17 6.22 30.59 0.19 -4.98 16 3 C 0.10 5.14 4.88 86.38 0.42 5.56 16 4 N -0.41 -21.80 2.49 -638.17 -1.59 -23.39 16 5 C -0.34 -18.58 7.65 84.43 0.65 -17.93 16 6 H 0.10 5.39 6.14 -2.91 -0.02 5.38 16 7 C 0.01 0.34 5.35 85.20 0.46 0.79 16 8 N -0.89 -47.89 10.93 21.79 0.24 -47.65 16 9 Si 0.99 41.66 29.56 68.60 2.03 43.69 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 13 C 0.41 21.46 7.60 87.00 0.66 22.13 16 14 O -0.60 -31.87 13.90 -3.86 -0.05 -31.92 16 15 C 0.42 19.44 7.09 27.35 0.19 19.64 16 16 O -0.45 -21.93 14.07 -3.88 -0.05 -21.98 16 17 C -0.33 -12.95 6.12 -20.09 -0.12 -13.07 16 18 C 0.10 3.96 11.12 85.71 0.95 4.92 16 19 N -0.33 -10.95 12.49 -56.17 -0.70 -11.65 16 20 N -0.36 -9.12 3.98 -367.42 -1.46 -10.58 16 21 C 0.09 1.05 11.44 127.77 1.46 2.51 16 22 C 0.14 3.99 11.32 84.39 0.95 4.95 16 23 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.11 5.50 5.46 -2.39 -0.01 5.49 16 29 H 0.04 2.00 7.53 -2.39 -0.02 1.98 16 30 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 31 H 0.19 7.77 6.27 -2.91 -0.02 7.75 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.22 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -69.35 304.30 6.04 -63.31 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.11 Total: 19.30 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 6.53 Total: 20.87 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -3.52 Total: -93.26 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -0.11 Total: -53.90 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -69.35 6.04 -63.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338868523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.050 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds