Wall clock time and date at job start Mon Mar 30 2020 00:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.67101 * 2 1 4 4 C 1.53073 * 109.67245 * 120.49452 * 2 1 3 5 5 C 1.50182 * 109.88924 * 168.63552 * 4 2 1 6 6 O 1.21282 * 118.24114 * 162.43397 * 5 4 2 7 7 N 1.33348 * 123.50776 * 342.41632 * 5 4 2 8 8 C 1.45757 * 124.10990 * 2.22706 * 7 5 4 9 9 H 1.09002 * 109.30110 * 220.82055 * 8 7 5 10 10 C 1.50696 * 109.30234 * 101.23197 * 8 7 5 11 11 O 1.21294 * 120.00620 * 339.59046 * 10 8 7 12 12 N 1.34779 * 119.99710 * 159.58342 * 10 8 7 13 13 C 1.37095 * 119.99811 * 180.02562 * 12 10 8 14 14 H 1.08000 * 120.00392 * 7.69644 * 13 12 10 15 15 C 1.38951 * 119.99999 * 187.68705 * 13 12 10 16 16 N 1.31411 * 119.99949 * 27.82761 * 15 13 12 17 17 Si 1.86796 * 120.00427 * 207.82309 * 15 13 12 18 18 H 1.48495 * 109.47004 * 60.00067 * 17 15 13 19 19 H 1.48502 * 109.47614 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47016 * 300.00235 * 17 15 13 21 21 C 1.46501 * 119.99963 * 0.02562 * 12 10 8 22 22 C 1.47197 * 109.47077 * 91.18368 * 21 12 10 23 23 N 4.35544 * 80.27617 * 276.73998 * 2 1 3 24 24 C 1.52885 * 109.74300 * 239.39691 * 2 1 3 25 25 H 1.09001 * 109.47244 * 299.50558 * 1 2 3 26 26 H 1.08997 * 109.47106 * 59.50829 * 1 2 3 27 27 H 1.09002 * 109.46661 * 179.50540 * 1 2 3 28 28 H 1.08993 * 109.39920 * 48.50565 * 4 2 1 29 29 H 1.09002 * 109.32964 * 288.71639 * 4 2 1 30 30 H 0.97004 * 117.94461 * 182.19854 * 7 5 4 31 31 H 0.97001 * 120.00416 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.47119 * 211.17944 * 21 12 10 33 33 H 1.09001 * 109.47100 * 331.17902 * 21 12 10 34 34 H 1.09005 * 109.35209 * 52.91239 * 24 2 1 35 35 H 1.08995 * 109.61962 * 292.57681 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0453 -0.7314 1.2420 5 6 3.5211 -0.9788 1.1137 6 8 4.1474 -1.2470 2.1171 7 7 4.1795 -0.9198 -0.0444 8 6 3.5644 -0.5643 -1.3171 9 1 3.9585 -1.2112 -2.1009 10 6 3.8902 0.8702 -1.6444 11 8 4.2341 1.6302 -0.7639 12 7 3.7997 1.3086 -2.9157 13 6 4.0966 2.6134 -3.2136 14 1 4.5210 3.2569 -2.4572 15 6 3.8517 3.1079 -4.4888 16 7 2.8934 2.5880 -5.2224 17 14 4.8846 4.5120 -5.1604 18 1 6.3109 4.1010 -5.2028 19 1 4.4260 4.8524 -6.5312 20 1 4.7376 5.6995 -4.2807 21 6 3.3839 0.3907 -3.9792 22 6 1.9221 0.4551 -4.1392 23 7 0.7944 0.5038 -4.2632 24 6 2.0465 -0.7326 -1.2385 25 1 -0.3634 0.5061 0.8944 26 1 -0.3633 0.5214 -0.8855 27 1 -0.3633 -1.0277 -0.0089 28 1 1.5258 -1.6843 1.3426 29 1 1.8560 -0.1208 2.1249 30 1 5.1273 -1.1259 -0.0394 31 1 2.7227 2.9329 -6.1127 32 1 3.8648 0.6768 -4.9146 33 1 3.6763 -0.6260 -3.7165 34 1 1.5847 -0.3062 -2.1292 35 1 1.7991 -1.7917 -1.1670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339604337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:33 Heat of formation + Delta-G solvation = -33.659281 kcal Electronic energy + Delta-G solvation = -20993.706023 eV Core-core repulsion = 17799.313903 eV Total energy + Delta-G solvation = -3194.392121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52819 -38.65803 -36.34606 -35.91010 -34.43717 -33.74101 -32.07183 -29.64131 -27.76861 -27.55505 -25.44145 -23.68764 -21.21999 -20.27190 -18.67859 -18.16054 -16.85594 -16.58079 -16.36251 -15.86939 -15.22422 -14.80388 -14.38290 -14.24553 -13.69723 -13.44235 -13.23818 -13.11153 -12.71759 -12.37318 -12.05990 -12.01469 -11.82686 -11.74450 -11.36338 -11.24724 -10.99996 -10.79280 -10.55721 -10.53566 -10.41447 -10.34029 -9.51155 -9.41135 -9.34854 -8.33868 -8.23824 -6.67112 -4.06335 2.89412 3.01638 3.15992 3.18331 3.37583 3.47353 3.72067 3.85914 4.03013 4.57527 4.69926 4.76506 4.79657 4.88024 4.98000 5.08973 5.34847 5.44810 5.53357 5.71987 5.77729 5.79438 5.81904 5.91945 5.98889 6.22512 6.31448 6.36588 6.51609 7.00246 7.35041 7.57002 7.74030 8.14247 8.49532 8.61693 8.86714 9.05810 9.57491 10.38014 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.007075 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.468355 B = 3956.830109 C = 4557.158554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.126 4.126 5 C 0.531 3.469 6 O -0.570 6.570 7 N -0.691 5.691 8 C 0.124 3.876 9 H 0.099 0.901 10 C 0.433 3.567 11 O -0.561 6.561 12 N -0.436 5.436 13 C -0.320 4.320 14 H 0.112 0.888 15 C 0.037 3.963 16 N -0.868 5.868 17 Si 0.923 3.077 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.213 3.787 22 C 0.247 3.753 23 N -0.466 5.466 24 C -0.127 4.127 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.399 0.601 31 H 0.276 0.724 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -8.213 1.314 8.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.166 4.166 5 C 0.319 3.681 6 O -0.450 6.450 7 N -0.340 5.340 8 C 0.015 3.985 9 H 0.117 0.883 10 C 0.220 3.780 11 O -0.442 6.442 12 N -0.156 5.156 13 C -0.447 4.447 14 H 0.130 0.870 15 C -0.167 4.167 16 N -0.506 5.506 17 Si 0.749 3.251 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.086 3.914 22 C -0.070 4.070 23 N -0.147 5.147 24 C -0.165 4.165 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.235 0.765 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.237 -7.789 1.895 8.322 hybrid contribution 1.126 0.838 -0.787 1.609 sum -1.110 -6.951 1.108 7.126 Atomic orbital electron populations 1.21776 0.94245 1.01696 1.02277 1.21182 0.96356 1.01091 0.93092 0.89167 1.21685 0.91886 1.02641 1.00368 1.20044 0.90487 0.75243 0.82353 1.90710 1.68758 1.50368 1.35128 1.45049 1.13220 1.68710 1.07068 1.20969 0.95255 0.95895 0.86397 0.88293 1.20351 0.85191 0.89644 0.82820 1.90586 1.51050 1.57046 1.45564 1.43755 1.57638 1.10093 1.04133 1.19699 1.40270 0.87234 0.97478 0.87001 1.25209 0.95514 0.99296 0.96725 1.69888 1.24820 1.43721 1.12191 0.86029 0.80384 0.80800 0.77846 1.19613 1.20959 1.19762 1.18924 0.83309 0.93172 0.96021 1.29063 0.95037 0.90943 0.91995 1.80911 1.13719 1.10751 1.09273 1.21952 0.92419 1.01577 1.00558 0.92460 0.92051 0.92691 0.88598 0.88425 0.76550 0.91331 0.85423 0.89674 0.89015 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.10 -1.49 2.74 -90.64 -0.25 -1.73 16 3 H 0.09 1.69 6.93 -51.93 -0.36 1.33 16 4 C -0.13 -1.79 5.35 -28.10 -0.15 -1.94 16 5 C 0.53 9.09 7.71 -11.87 -0.09 9.00 16 6 O -0.57 -11.55 17.78 5.56 0.10 -11.45 16 7 N -0.69 -10.94 4.60 -55.99 -0.26 -11.20 16 8 C 0.12 1.92 2.91 -69.53 -0.20 1.72 16 9 H 0.10 1.19 6.29 -51.93 -0.33 0.86 16 10 C 0.43 8.89 6.05 -10.99 -0.07 8.82 16 11 O -0.56 -13.83 15.66 5.55 0.09 -13.75 16 12 N -0.44 -9.24 2.59 -117.94 -0.30 -9.54 16 13 C -0.32 -7.77 9.40 -14.93 -0.14 -7.91 16 14 H 0.11 2.94 7.33 -52.49 -0.38 2.55 16 15 C 0.04 0.86 4.83 -17.47 -0.08 0.78 16 16 N -0.87 -20.34 9.26 55.50 0.51 -19.83 16 17 Si 0.92 18.71 29.63 -169.99 -5.04 13.68 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C 0.21 3.76 4.92 -6.83 -0.03 3.73 16 22 C 0.25 4.88 10.81 -20.78 -0.22 4.66 16 23 N -0.47 -9.95 18.26 42.14 0.77 -9.18 16 24 C -0.13 -1.84 4.62 -26.83 -0.12 -1.96 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.40 5.91 8.80 -40.82 -0.36 5.56 16 31 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 32 H 0.13 2.33 6.43 -51.93 -0.33 2.00 16 33 H 0.09 1.08 5.89 -51.93 -0.31 0.77 16 34 H 0.09 1.49 4.56 -51.93 -0.24 1.25 16 35 H 0.08 0.92 8.12 -51.93 -0.42 0.49 16 LS Contribution 290.97 15.07 4.38 4.38 Total: -1.00 -30.82 290.97 -4.75 -35.57 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.97 Total: 7.67 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -1.02 Total: 13.65 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.72 Total: -49.75 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.19 Total: -25.20 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.04 Total: 13.68 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.82 -4.75 -35.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339604337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.908 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds