Wall clock time and date at job start Mon Mar 30 2020 00:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.67101 * 2 1 4 4 C 1.53073 * 109.67245 * 120.49452 * 2 1 3 5 5 C 1.50182 * 109.88924 * 168.63552 * 4 2 1 6 6 O 1.21282 * 118.24114 * 162.43397 * 5 4 2 7 7 N 1.33348 * 123.50776 * 342.41632 * 5 4 2 8 8 C 1.45757 * 124.10990 * 2.22706 * 7 5 4 9 9 H 1.09002 * 109.30110 * 220.82055 * 8 7 5 10 10 C 1.50696 * 109.30234 * 101.23197 * 8 7 5 11 11 O 1.21294 * 120.00620 * 339.59046 * 10 8 7 12 12 N 1.34779 * 119.99710 * 159.58342 * 10 8 7 13 13 C 1.37095 * 119.99811 * 180.02562 * 12 10 8 14 14 H 1.08000 * 120.00392 * 7.69644 * 13 12 10 15 15 C 1.38951 * 119.99999 * 187.68705 * 13 12 10 16 16 N 1.31411 * 119.99949 * 27.82761 * 15 13 12 17 17 Si 1.86796 * 120.00427 * 207.82309 * 15 13 12 18 18 H 1.48495 * 109.47004 * 60.00067 * 17 15 13 19 19 H 1.48502 * 109.47614 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47016 * 300.00235 * 17 15 13 21 21 C 1.46501 * 119.99963 * 0.02562 * 12 10 8 22 22 C 1.47197 * 109.47077 * 91.18368 * 21 12 10 23 23 N 4.35544 * 80.27617 * 276.73998 * 2 1 3 24 24 C 1.52885 * 109.74300 * 239.39691 * 2 1 3 25 25 H 1.09001 * 109.47244 * 299.50558 * 1 2 3 26 26 H 1.08997 * 109.47106 * 59.50829 * 1 2 3 27 27 H 1.09002 * 109.46661 * 179.50540 * 1 2 3 28 28 H 1.08993 * 109.39920 * 48.50565 * 4 2 1 29 29 H 1.09002 * 109.32964 * 288.71639 * 4 2 1 30 30 H 0.97004 * 117.94461 * 182.19854 * 7 5 4 31 31 H 0.97001 * 120.00416 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.47119 * 211.17944 * 21 12 10 33 33 H 1.09001 * 109.47100 * 331.17902 * 21 12 10 34 34 H 1.09005 * 109.35209 * 52.91239 * 24 2 1 35 35 H 1.08995 * 109.61962 * 292.57681 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0453 -0.7314 1.2420 5 6 3.5211 -0.9788 1.1137 6 8 4.1474 -1.2470 2.1171 7 7 4.1795 -0.9198 -0.0444 8 6 3.5644 -0.5643 -1.3171 9 1 3.9585 -1.2112 -2.1009 10 6 3.8902 0.8702 -1.6444 11 8 4.2341 1.6302 -0.7639 12 7 3.7997 1.3086 -2.9157 13 6 4.0966 2.6134 -3.2136 14 1 4.5210 3.2569 -2.4572 15 6 3.8517 3.1079 -4.4888 16 7 2.8934 2.5880 -5.2224 17 14 4.8846 4.5120 -5.1604 18 1 6.3109 4.1010 -5.2028 19 1 4.4260 4.8524 -6.5312 20 1 4.7376 5.6995 -4.2807 21 6 3.3839 0.3907 -3.9792 22 6 1.9221 0.4551 -4.1392 23 7 0.7944 0.5038 -4.2632 24 6 2.0465 -0.7326 -1.2385 25 1 -0.3634 0.5061 0.8944 26 1 -0.3633 0.5214 -0.8855 27 1 -0.3633 -1.0277 -0.0089 28 1 1.5258 -1.6843 1.3426 29 1 1.8560 -0.1208 2.1249 30 1 5.1273 -1.1259 -0.0394 31 1 2.7227 2.9329 -6.1127 32 1 3.8648 0.6768 -4.9146 33 1 3.6763 -0.6260 -3.7165 34 1 1.5847 -0.3062 -2.1292 35 1 1.7991 -1.7917 -1.1670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339604337.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:32 Heat of formation + Delta-G solvation = -55.550531 kcal Electronic energy + Delta-G solvation = -20994.655299 eV Core-core repulsion = 17799.313903 eV Total energy + Delta-G solvation = -3195.341396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.89981 -40.18728 -37.77871 -37.47360 -36.08685 -35.02327 -33.81959 -30.97388 -29.15842 -28.82929 -27.03055 -25.08108 -22.46001 -21.74578 -20.02450 -19.82620 -18.26328 -18.07167 -17.85421 -17.21297 -16.67204 -16.31040 -15.91464 -15.70071 -15.15130 -14.93995 -14.67508 -14.40542 -14.12541 -13.70950 -13.56241 -13.36513 -13.28541 -13.02019 -12.92859 -12.79871 -12.37526 -12.18334 -12.13952 -12.11787 -11.72226 -11.61055 -11.08389 -10.97433 -10.80155 -10.01177 -9.84752 -8.45776 -5.90824 1.37095 1.47300 1.52918 1.60073 1.79521 2.03763 2.27750 2.34694 2.42113 2.94002 3.11224 3.51971 3.59634 3.65958 3.69881 3.81803 3.94166 4.22773 4.41515 4.58357 4.65351 4.66120 4.71518 4.77078 4.88161 4.93285 5.11777 5.24697 5.35328 5.48723 5.74415 5.97909 6.29735 6.40006 7.07529 7.11209 7.18943 7.34874 7.90492 8.56460 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.007075 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.468355 B = 3956.830109 C = 4557.158554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.042 0.958 4 C -0.119 4.119 5 C 0.524 3.476 6 O -0.607 6.607 7 N -0.686 5.686 8 C 0.133 3.867 9 H 0.147 0.853 10 C 0.430 3.570 11 O -0.612 6.612 12 N -0.445 5.445 13 C -0.348 4.348 14 H 0.078 0.922 15 C 0.017 3.983 16 N -0.877 5.877 17 Si 0.976 3.024 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.287 1.287 21 C 0.211 3.789 22 C 0.259 3.741 23 N -0.498 5.498 24 C -0.125 4.125 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.133 0.867 29 H 0.097 0.903 30 H 0.403 0.597 31 H 0.277 0.723 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.076 0.924 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 -10.347 0.596 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.060 0.940 4 C -0.158 4.158 5 C 0.313 3.687 6 O -0.490 6.490 7 N -0.335 5.335 8 C 0.024 3.976 9 H 0.164 0.836 10 C 0.219 3.781 11 O -0.497 6.497 12 N -0.165 5.165 13 C -0.476 4.476 14 H 0.096 0.904 15 C -0.187 4.187 16 N -0.515 5.515 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.213 1.213 21 C 0.085 3.915 22 C -0.058 4.058 23 N -0.179 5.179 24 C -0.163 4.163 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.151 0.849 29 H 0.115 0.885 30 H 0.239 0.761 31 H 0.088 0.912 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.095 0.905 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.594 -9.941 1.131 10.336 hybrid contribution 1.235 1.558 -0.531 2.058 sum -1.359 -8.383 0.600 8.514 Atomic orbital electron populations 1.21723 0.92521 1.03380 1.01687 1.21096 0.97750 0.98626 0.94128 0.93981 1.21700 0.90082 1.04292 0.99742 1.20600 0.91671 0.74410 0.82009 1.90694 1.69772 1.52203 1.36301 1.45066 1.13594 1.67737 1.07073 1.21081 0.96391 0.92795 0.87313 0.83568 1.21340 0.83258 0.91590 0.81945 1.90558 1.52926 1.59157 1.47054 1.43853 1.57659 1.09660 1.05356 1.19475 1.41821 0.88819 0.97447 0.90359 1.25678 0.95773 1.00915 0.96340 1.69951 1.24918 1.44436 1.12208 0.85264 0.79544 0.78082 0.77069 1.18839 1.20172 1.21277 1.19277 0.81930 0.95264 0.95049 1.29425 0.95386 0.89985 0.91026 1.80913 1.14772 1.11800 1.10369 1.22017 0.91096 1.03859 0.99376 0.91611 0.94194 0.89745 0.84907 0.88475 0.76124 0.91239 0.85843 0.83868 0.90529 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.19 71.98 0.66 -2.58 16 2 C -0.10 -2.77 2.74 -10.81 -0.03 -2.80 16 3 H 0.04 1.61 6.93 -2.38 -0.02 1.59 16 4 C -0.12 -3.10 5.35 29.71 0.16 -2.94 16 5 C 0.52 17.12 7.71 87.72 0.68 17.80 16 6 O -0.61 -24.13 17.78 -3.04 -0.05 -24.18 16 7 N -0.69 -20.39 4.60 -450.23 -2.07 -22.46 16 8 C 0.13 3.75 2.91 44.36 0.13 3.87 16 9 H 0.15 2.75 6.29 -2.39 -0.02 2.74 16 10 C 0.43 17.50 6.05 87.66 0.53 18.03 16 11 O -0.61 -31.14 15.66 -3.07 -0.05 -31.19 16 12 N -0.45 -18.70 2.59 -645.42 -1.67 -20.36 16 13 C -0.35 -17.24 9.40 84.04 0.79 -16.45 16 14 H 0.08 4.34 7.33 -2.91 -0.02 4.31 16 15 C 0.02 0.78 4.83 84.93 0.41 1.19 16 16 N -0.88 -40.60 9.26 21.66 0.20 -40.40 16 17 Si 0.98 38.44 29.63 68.60 2.03 40.47 16 18 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 19 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 20 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 21 C 0.21 6.98 4.92 84.57 0.42 7.39 16 22 C 0.26 9.79 10.81 89.45 0.97 10.76 16 23 N -0.50 -20.67 18.26 20.00 0.37 -20.30 16 24 C -0.13 -3.25 4.62 30.53 0.14 -3.11 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.13 2.51 8.10 -2.39 -0.02 2.49 16 29 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.40 11.26 8.80 -92.71 -0.82 10.45 16 31 H 0.28 12.43 8.31 -92.71 -0.77 11.66 16 32 H 0.12 4.26 6.43 -2.39 -0.02 4.25 16 33 H 0.14 2.97 5.89 -2.39 -0.01 2.96 16 34 H 0.08 2.30 4.56 -2.38 -0.01 2.28 16 35 H 0.12 2.17 8.12 -2.39 -0.02 2.15 16 Total: -1.00 -70.09 290.97 3.93 -66.15 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.32 Total: 21.11 kcal Atomic # 6 Polarization: 26.31 SS G_CDS: 4.85 Total: 31.16 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -3.17 Total: -103.53 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -0.10 Total: -55.38 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -70.09 3.93 -66.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339604337.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.603 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds