Wall clock time and date at job start Mon Mar 30 2020 00:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35988 * 117.00201 * 2 1 4 4 C 1.38778 * 120.49612 * 0.26830 * 3 2 1 5 5 C 1.38791 * 118.44839 * 180.28461 * 4 3 2 6 6 C 1.38062 * 119.35474 * 359.73356 * 5 4 3 7 7 N 1.31976 * 120.95530 * 359.97438 * 6 5 4 8 8 C 1.32275 * 121.68654 * 0.02562 * 7 6 5 9 9 N 1.39576 * 119.72748 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00007 * 0.02562 * 9 8 7 11 11 O 1.21586 * 120.00350 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00414 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00075 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47049 * 324.99133 * 13 12 10 15 15 C 1.52997 * 109.47188 * 85.00024 * 13 12 10 16 16 C 1.50706 * 109.46582 * 204.99875 * 13 12 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 H 1.09001 * 109.46532 * 300.00184 * 1 2 3 25 25 H 1.08996 * 109.47195 * 59.99839 * 1 2 3 26 26 H 1.08999 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.77697 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.32298 * 179.71507 * 5 4 3 29 29 H 1.07998 * 119.52885 * 180.02562 * 6 5 4 30 30 H 0.96994 * 120.00354 * 180.02562 * 9 8 7 31 31 H 0.96996 * 119.99132 * 359.97438 * 12 10 9 32 32 H 1.09002 * 109.47153 * 299.99573 * 15 13 12 33 33 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 34 34 H 1.09004 * 109.47261 * 59.99745 * 15 13 12 35 35 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.3008 2.3821 0.0056 5 6 1.9747 3.5954 -0.0007 6 6 3.3553 3.6027 -0.0066 7 7 4.0401 2.4746 -0.0059 8 6 3.4386 1.2966 0.0000 9 7 4.2033 0.1289 0.0000 10 6 5.5489 0.2046 -0.0055 11 8 6.0967 1.2900 -0.0109 12 7 6.2874 -0.9229 -0.0050 13 6 7.7500 -0.8405 -0.0104 14 1 8.0633 0.0187 -0.6035 15 6 8.2572 -0.6823 1.4244 16 6 8.3217 -2.0997 -0.6094 17 1 7.6616 -2.8830 -0.9514 18 6 9.6876 -2.2515 -0.7208 19 7 10.1865 -3.3505 -1.2431 20 14 10.8294 -0.8969 -0.1286 21 1 11.1701 -1.1254 1.2986 22 1 12.0719 -0.9061 -0.9418 23 1 10.1538 0.4177 -0.2719 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2212 2.3495 0.0104 28 1 1.4244 4.5247 -0.0012 29 1 3.8825 4.5453 -0.0111 30 1 3.7663 -0.7370 0.0039 31 1 5.8503 -1.7888 -0.0003 32 1 7.8437 0.2284 1.8576 33 1 9.3455 -0.6215 1.4203 34 1 7.9439 -1.5416 2.0173 35 1 11.1475 -3.4575 -1.3211 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548502570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:32 Heat of formation + Delta-G solvation = -4.458159 kcal Electronic energy + Delta-G solvation = -19773.896190 eV Core-core repulsion = 16580.770326 eV Total energy + Delta-G solvation = -3193.125865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95785 -39.22257 -38.08773 -35.36109 -34.21371 -32.38024 -31.73139 -30.33786 -28.99542 -27.61818 -25.13131 -23.74352 -23.00120 -21.27713 -19.84671 -18.66426 -18.18354 -17.58271 -16.58262 -16.13687 -16.03169 -15.39482 -14.92714 -14.68987 -14.41848 -14.04519 -13.65398 -13.51546 -13.13764 -12.85190 -12.49935 -12.12300 -11.82685 -11.69584 -11.63214 -11.30358 -10.74152 -10.56834 -10.12078 -9.99481 -9.55621 -9.43293 -9.16351 -8.86960 -8.70282 -8.13355 -7.71624 -6.16102 -4.18139 1.16543 1.24604 2.91616 2.95922 3.28923 3.40634 3.47129 3.62925 4.12404 4.37218 4.42807 4.59293 4.61216 4.86528 4.87162 4.99285 5.16288 5.19287 5.25744 5.32831 5.77073 5.98700 6.30232 6.39039 6.44025 6.55105 6.63789 6.86216 7.06758 7.16920 7.39115 7.43783 7.59659 8.09813 8.37571 8.71593 8.84444 9.24215 9.45923 10.96095 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.004501 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.077354 B = 6219.808033 C = 6829.493498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.030 3.970 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.098 3.902 7 N -0.439 5.439 8 C 0.378 3.622 9 N -0.668 5.668 10 C 0.685 3.315 11 O -0.541 6.541 12 N -0.715 5.715 13 C 0.254 3.746 14 H 0.050 0.950 15 C -0.162 4.162 16 C -0.533 4.533 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.894 5.894 20 Si 0.886 3.114 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.260 1.260 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.159 0.841 30 H 0.414 0.586 31 H 0.391 0.609 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.944 8.999 3.567 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.229 6.229 3 C -0.020 4.020 4 C -0.164 4.164 5 C -0.203 4.203 6 C -0.059 4.059 7 N -0.154 5.154 8 C 0.142 3.858 9 N -0.317 5.317 10 C 0.385 3.615 11 O -0.413 6.413 12 N -0.368 5.368 13 C 0.151 3.849 14 H 0.068 0.932 15 C -0.220 4.220 16 C -0.571 4.571 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.531 5.531 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.185 1.185 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.176 0.824 30 H 0.251 0.749 31 H 0.224 0.776 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.119 9.637 3.497 21.694 hybrid contribution -0.963 -0.185 0.330 1.035 sum -20.083 9.451 3.827 22.523 Atomic orbital electron populations 1.23041 0.78217 1.04092 1.01173 1.86030 1.21488 1.25863 1.89532 1.19403 0.91120 0.85868 1.05653 1.21388 1.00225 0.91523 1.03303 1.21830 0.95653 0.98003 1.04822 1.22627 0.91018 0.96033 0.96204 1.67890 1.37826 0.96155 1.13494 1.17704 0.83899 0.87283 0.96903 1.42860 1.05998 1.07019 1.75850 1.16195 0.80218 0.85977 0.79148 1.90986 1.69671 1.26322 1.54342 1.45468 1.08326 1.05818 1.77142 1.19006 0.74171 0.98923 0.92846 0.93241 1.22472 0.99810 0.99865 0.99866 1.21044 0.92718 1.01843 1.41513 0.90210 1.24812 0.97868 0.95517 0.94331 1.69872 1.12965 1.26014 1.44249 0.86870 0.80049 0.83439 0.78116 1.20326 1.22216 1.18494 0.92752 0.92711 0.88056 0.84365 0.84799 0.82374 0.74931 0.77596 0.94418 0.93481 0.92918 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.83 101.05 0.99 1.19 16 2 O -0.32 -3.48 9.75 -19.70 -0.19 -3.67 16 3 C 0.03 0.39 6.72 -38.92 -0.26 0.13 16 4 C -0.14 -1.40 9.14 -39.18 -0.36 -1.76 16 5 C -0.18 -1.84 10.10 -39.44 -0.40 -2.24 16 6 C 0.10 1.30 11.17 -17.55 -0.20 1.11 16 7 N -0.44 -7.81 7.87 -12.23 -0.10 -7.91 16 8 C 0.38 6.21 7.45 -154.44 -1.15 5.06 16 9 N -0.67 -11.24 5.40 -15.67 -0.08 -11.33 16 10 C 0.69 14.37 8.50 -86.91 -0.74 13.64 16 11 O -0.54 -13.38 14.26 5.29 0.08 -13.30 16 12 N -0.71 -14.98 5.07 -59.81 -0.30 -15.28 16 13 C 0.25 6.29 2.15 -69.08 -0.15 6.14 16 14 H 0.05 1.35 6.63 -51.93 -0.34 1.01 16 15 C -0.16 -3.76 8.96 37.16 0.33 -3.42 16 16 C -0.53 -14.69 9.31 -34.44 -0.32 -15.01 16 17 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 18 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 19 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 20 Si 0.89 22.21 24.37 -169.99 -4.14 18.07 16 21 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.26 -6.53 6.53 56.52 0.37 -6.17 16 24 H 0.05 0.29 7.69 -51.93 -0.40 -0.11 16 25 H 0.05 0.30 7.71 -51.93 -0.40 -0.10 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.14 0.95 6.44 -52.48 -0.34 0.61 16 28 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.41 5.67 8.06 -40.82 -0.33 5.34 16 31 H 0.39 7.11 8.55 -40.82 -0.35 6.76 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 295.15 15.07 4.45 4.45 Total: -1.00 -35.09 295.15 -5.91 -40.99 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.04 Total: 7.06 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -2.34 Total: 6.95 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.29 Total: -60.54 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.12 Total: -16.98 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -35.09 -5.91 -40.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548502570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.537 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds