Wall clock time and date at job start Mon Mar 30 2020 00:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35988 * 117.00201 * 2 1 4 4 C 1.38778 * 120.49612 * 0.26830 * 3 2 1 5 5 C 1.38791 * 118.44839 * 180.28461 * 4 3 2 6 6 C 1.38062 * 119.35474 * 359.73356 * 5 4 3 7 7 N 1.31976 * 120.95530 * 359.97438 * 6 5 4 8 8 C 1.32275 * 121.68654 * 0.02562 * 7 6 5 9 9 N 1.39576 * 119.72748 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00007 * 0.02562 * 9 8 7 11 11 O 1.21586 * 120.00350 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00414 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00075 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47049 * 324.99133 * 13 12 10 15 15 C 1.52997 * 109.47188 * 85.00024 * 13 12 10 16 16 C 1.50706 * 109.46582 * 204.99875 * 13 12 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 12 18 18 C 1.37879 * 119.99394 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99350 * 179.97438 * 18 16 13 20 20 Si 1.86789 * 120.00458 * 0.02562 * 18 16 13 21 21 H 1.48500 * 109.47356 * 89.99481 * 20 18 16 22 22 H 1.48501 * 109.47162 * 209.99853 * 20 18 16 23 23 H 1.48503 * 109.47180 * 329.99546 * 20 18 16 24 24 H 1.09001 * 109.46532 * 300.00184 * 1 2 3 25 25 H 1.08996 * 109.47195 * 59.99839 * 1 2 3 26 26 H 1.08999 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.08005 * 120.77697 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.32298 * 179.71507 * 5 4 3 29 29 H 1.07998 * 119.52885 * 180.02562 * 6 5 4 30 30 H 0.96994 * 120.00354 * 180.02562 * 9 8 7 31 31 H 0.96996 * 119.99132 * 359.97438 * 12 10 9 32 32 H 1.09002 * 109.47153 * 299.99573 * 15 13 12 33 33 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 34 34 H 1.09004 * 109.47261 * 59.99745 * 15 13 12 35 35 H 0.97005 * 119.99656 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.3008 2.3821 0.0056 5 6 1.9747 3.5954 -0.0007 6 6 3.3553 3.6027 -0.0066 7 7 4.0401 2.4746 -0.0059 8 6 3.4386 1.2966 0.0000 9 7 4.2033 0.1289 0.0000 10 6 5.5489 0.2046 -0.0055 11 8 6.0967 1.2900 -0.0109 12 7 6.2874 -0.9229 -0.0050 13 6 7.7500 -0.8405 -0.0104 14 1 8.0633 0.0187 -0.6035 15 6 8.2572 -0.6823 1.4244 16 6 8.3217 -2.0997 -0.6094 17 1 7.6616 -2.8830 -0.9514 18 6 9.6876 -2.2515 -0.7208 19 7 10.1865 -3.3505 -1.2431 20 14 10.8294 -0.8969 -0.1286 21 1 11.1701 -1.1254 1.2986 22 1 12.0719 -0.9061 -0.9418 23 1 10.1538 0.4177 -0.2719 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2212 2.3495 0.0104 28 1 1.4244 4.5247 -0.0012 29 1 3.8825 4.5453 -0.0111 30 1 3.7663 -0.7370 0.0039 31 1 5.8503 -1.7888 -0.0003 32 1 7.8437 0.2284 1.8576 33 1 9.3455 -0.6215 1.4203 34 1 7.9439 -1.5416 2.0173 35 1 11.1475 -3.4575 -1.3211 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548502570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:32 Heat of formation + Delta-G solvation = -31.679904 kcal Electronic energy + Delta-G solvation = -19775.076614 eV Core-core repulsion = 16580.770326 eV Total energy + Delta-G solvation = -3194.306288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.03285 -40.63387 -39.00618 -37.06877 -35.73724 -34.39097 -32.78580 -31.86068 -30.28904 -28.25496 -27.21364 -24.97113 -23.93669 -22.89097 -21.52814 -20.07018 -19.38540 -18.60797 -18.26932 -17.36517 -17.18483 -16.94623 -16.19981 -16.06455 -15.61657 -15.24011 -15.05069 -14.89064 -14.55988 -14.37339 -14.10197 -13.67402 -13.27007 -13.22594 -12.76870 -12.34473 -12.29600 -12.14206 -11.81014 -11.64837 -11.37481 -11.27016 -10.85699 -10.42479 -10.13440 -9.88192 -8.80536 -8.37138 -6.42827 0.18331 0.34556 1.29038 1.37300 1.47878 1.57421 2.20617 2.20928 2.28141 2.94744 2.99757 3.15733 3.62684 3.86055 4.02952 4.16243 4.43104 4.45956 4.46276 4.51972 4.56196 4.71344 4.79931 4.93157 4.99821 5.13805 5.29258 5.34193 5.44453 5.54853 5.64593 5.88951 6.22466 6.31081 6.58421 6.93851 7.20174 7.34361 7.69023 8.78110 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.034177 B = 0.004501 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.077354 B = 6219.808033 C = 6829.493498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.041 3.959 4 C -0.132 4.132 5 C -0.153 4.153 6 C 0.071 3.929 7 N -0.491 5.491 8 C 0.328 3.672 9 N -0.659 5.659 10 C 0.688 3.312 11 O -0.583 6.583 12 N -0.713 5.713 13 C 0.261 3.739 14 H 0.022 0.978 15 C -0.154 4.154 16 C -0.532 4.532 17 H 0.058 0.942 18 C 0.031 3.969 19 N -0.933 5.933 20 Si 0.939 3.061 21 H -0.258 1.258 22 H -0.291 1.291 23 H -0.265 1.265 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.181 0.819 28 H 0.178 0.822 29 H 0.172 0.828 30 H 0.426 0.574 31 H 0.404 0.596 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.655 10.358 4.402 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C -0.010 4.010 4 C -0.159 4.159 5 C -0.174 4.174 6 C -0.085 4.085 7 N -0.206 5.206 8 C 0.095 3.905 9 N -0.309 5.309 10 C 0.387 3.613 11 O -0.459 6.459 12 N -0.367 5.367 13 C 0.156 3.844 14 H 0.039 0.961 15 C -0.212 4.212 16 C -0.570 4.570 17 H 0.076 0.924 18 C -0.169 4.169 19 N -0.572 5.572 20 Si 0.766 3.234 21 H -0.184 1.184 22 H -0.218 1.218 23 H -0.190 1.190 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.198 0.802 28 H 0.195 0.805 29 H 0.189 0.811 30 H 0.265 0.735 31 H 0.239 0.761 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.916 10.982 4.342 24.895 hybrid contribution -0.381 -0.570 0.022 0.686 sum -22.297 10.412 4.364 24.992 Atomic orbital electron populations 1.23415 0.75639 1.05893 1.02650 1.86023 1.24075 1.25208 1.89178 1.19389 0.89943 0.87479 1.04223 1.21910 1.02137 0.90308 1.01526 1.22281 0.94412 0.99883 1.00845 1.23025 0.92832 0.95360 0.97324 1.67677 1.40510 0.97718 1.14714 1.17920 0.85390 0.86692 1.00519 1.42506 1.04351 1.08327 1.75745 1.16251 0.81469 0.84988 0.78564 1.90943 1.71027 1.27673 1.56265 1.45174 1.07123 1.06781 1.77617 1.18648 0.76291 0.96169 0.93272 0.96061 1.22349 0.99428 1.00705 0.98724 1.21222 0.92655 1.02147 1.41026 0.92412 1.25512 0.99404 0.97373 0.94571 1.69971 1.13573 1.27826 1.45802 0.86008 0.78186 0.80545 0.78677 1.18351 1.21782 1.18953 0.91090 0.91218 0.86358 0.80182 0.80498 0.81093 0.73515 0.76124 0.93923 0.93888 0.91577 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 113.37 1.11 1.28 16 2 O -0.33 -6.55 9.75 -93.42 -0.91 -7.46 16 3 C 0.04 0.96 6.72 22.70 0.15 1.11 16 4 C -0.13 -2.17 9.14 22.53 0.21 -1.97 16 5 C -0.15 -2.56 10.10 22.36 0.23 -2.33 16 6 C 0.07 1.81 11.17 84.63 0.95 2.76 16 7 N -0.49 -17.69 7.87 -192.59 -1.52 -19.21 16 8 C 0.33 10.77 7.45 132.99 0.99 11.76 16 9 N -0.66 -22.54 5.40 -321.76 -1.74 -24.28 16 10 C 0.69 29.62 8.50 179.05 1.52 31.15 16 11 O -0.58 -29.86 14.26 -3.99 -0.06 -29.92 16 12 N -0.71 -30.49 5.07 -461.41 -2.34 -32.83 16 13 C 0.26 13.13 2.15 44.25 0.10 13.23 16 14 H 0.02 1.20 6.63 -2.39 -0.02 1.19 16 15 C -0.15 -7.07 8.96 71.98 0.65 -6.43 16 16 C -0.53 -29.91 9.31 25.60 0.24 -29.67 16 17 H 0.06 3.43 7.98 -2.91 -0.02 3.40 16 18 C 0.03 1.80 5.45 84.66 0.46 2.26 16 19 N -0.93 -56.72 13.96 21.45 0.30 -56.42 16 20 Si 0.94 45.95 24.37 68.60 1.67 47.62 16 21 H -0.26 -11.80 6.87 99.48 0.68 -11.12 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 23 H -0.26 -13.09 6.53 99.48 0.65 -12.44 16 24 H 0.07 0.44 7.69 -2.39 -0.02 0.43 16 25 H 0.07 0.46 7.71 -2.39 -0.02 0.44 16 26 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.18 1.40 6.44 -2.91 -0.02 1.38 16 28 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 29 H 0.17 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.43 11.77 8.06 -92.71 -0.75 11.02 16 31 H 0.40 14.94 8.55 -92.71 -0.79 14.15 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.99 3.27 -2.39 -0.01 1.99 16 34 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 35 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -78.74 295.15 1.53 -77.21 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.48 Total: 22.14 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 6.60 Total: 23.14 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -5.29 Total: -132.75 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.97 Total: -37.38 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -78.74 1.53 -77.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548502570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.535 kcal (2) G-P(sol) polarization free energy of solvation -78.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds