Wall clock time and date at job start Mon Mar 30 2020 00:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00157 * 2 1 4 4 C 1.50696 * 109.47371 * 269.99956 * 3 2 1 5 5 H 1.08001 * 120.00172 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00038 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00055 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99839 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47029 * 59.99748 * 8 6 4 10 10 H 1.48502 * 109.46816 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46695 * 299.99873 * 8 6 4 12 12 C 1.34782 * 120.00292 * 180.02562 * 2 1 3 13 13 O 1.21565 * 120.00189 * 180.02562 * 12 2 1 14 14 N 1.34779 * 119.99525 * 0.02562 * 12 2 1 15 15 C 1.38811 * 119.99533 * 184.66151 * 14 12 2 16 16 C 1.41041 * 120.52790 * 302.36497 * 15 14 12 17 17 C 1.34985 * 119.79167 * 180.02562 * 16 15 14 18 18 N 1.35929 * 120.89401 * 359.74714 * 17 16 15 19 19 C 1.46504 * 119.44802 * 180.25937 * 18 17 16 20 20 C 1.34587 * 121.10021 * 0.51488 * 18 17 16 21 21 O 1.22118 * 119.92085 * 179.76306 * 20 18 17 22 22 C 1.38418 * 120.52272 * 122.39041 * 15 14 12 23 23 H 1.08998 * 109.47156 * 269.99923 * 1 2 3 24 24 H 1.08991 * 109.47126 * 30.00225 * 1 2 3 25 25 H 1.09009 * 109.46773 * 149.99998 * 1 2 3 26 26 H 1.09001 * 109.47014 * 29.99859 * 3 2 1 27 27 H 1.09000 * 109.47350 * 149.99715 * 3 2 1 28 28 H 0.96996 * 119.99852 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00226 * 4.66185 * 14 12 2 30 30 H 1.07996 * 120.10365 * 0.04043 * 16 15 14 31 31 H 1.07996 * 119.55376 * 180.02562 * 17 16 15 32 32 H 1.08996 * 109.46818 * 270.24902 * 19 18 17 33 33 H 1.08994 * 109.47222 * 30.25398 * 19 18 17 34 34 H 1.09006 * 109.46772 * 150.25104 * 19 18 17 35 35 H 1.08005 * 120.44934 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5525 3.6186 -0.6730 8 14 3.4368 3.4176 -3.4339 9 1 2.1391 3.5948 -4.1335 10 1 4.1795 4.7036 -3.4338 11 1 4.2396 2.3830 -4.1341 12 6 2.1389 -1.1672 -0.0005 13 8 3.3546 -1.1672 -0.0001 14 7 1.4650 -2.3344 -0.0016 15 6 2.1556 -3.5346 0.0956 16 6 3.1470 -3.8693 -0.8502 17 6 3.8091 -5.0406 -0.7418 18 7 3.5379 -5.9044 0.2721 19 6 4.2797 -7.1645 0.3626 20 6 2.5957 -5.6237 1.1912 21 8 2.3666 -6.4173 2.0907 22 6 1.8819 -4.4221 1.1220 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6084 2.0283 0.5138 27 1 3.1499 1.1384 0.5139 28 1 4.0287 4.4448 -0.8503 29 1 0.4974 -2.3358 -0.0702 30 1 3.3758 -3.1905 -1.6584 31 1 4.5677 -5.2929 -1.4679 32 1 3.7552 -7.9361 -0.2009 33 1 5.2789 -7.0284 -0.0509 34 1 4.3568 -7.4664 1.4072 35 1 1.1277 -4.1903 1.8594 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603019495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:49 Heat of formation + Delta-G solvation = -37.771406 kcal Electronic energy + Delta-G solvation = -19715.380561 eV Core-core repulsion = 16520.810125 eV Total energy + Delta-G solvation = -3194.570436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.41957 -41.19628 -38.14947 -37.09290 -36.43816 -34.78603 -33.45017 -30.93047 -29.76520 -28.13767 -27.28348 -25.30093 -24.72268 -23.26926 -21.20649 -19.46300 -18.69774 -18.58803 -18.24900 -18.00042 -16.98689 -16.89632 -16.45865 -16.15322 -15.68565 -15.12224 -14.87975 -14.46559 -14.15858 -14.04830 -13.90187 -13.54124 -13.48780 -13.14782 -13.00438 -12.83293 -12.64484 -12.50646 -12.16321 -11.72685 -11.49597 -11.34708 -11.06484 -10.60522 -10.14055 -9.41612 -9.02114 -8.18614 -6.33478 -0.29210 0.81727 1.40906 1.44604 1.51794 1.63328 1.77199 2.12123 2.41932 2.61536 3.00313 3.11846 3.74699 3.79267 4.15295 4.21902 4.29480 4.45200 4.49982 4.54053 4.65808 4.82894 4.83551 4.97899 5.02657 5.19727 5.26498 5.32871 5.55057 5.70871 5.76671 5.99470 6.04229 6.08216 6.75025 6.94879 6.99039 7.33209 7.58694 8.88153 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.004343 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.232991 B = 6444.871495 C = 6945.172662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.275 3.725 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.261 1.261 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.700 3.300 13 O -0.616 6.616 14 N -0.687 5.687 15 C 0.276 3.724 16 C -0.238 4.238 17 C 0.167 3.833 18 N -0.499 5.499 19 C 0.054 3.946 20 C 0.513 3.487 21 O -0.605 6.605 22 C -0.294 4.294 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.000 1.000 28 H 0.267 0.733 29 H 0.423 0.577 30 H 0.143 0.857 31 H 0.219 0.781 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.660 -17.706 -3.510 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.353 5.353 3 C 0.153 3.847 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.201 1.201 12 C 0.402 3.598 13 O -0.495 6.495 14 N -0.342 5.342 15 C 0.176 3.824 16 C -0.262 4.262 17 C 0.040 3.960 18 N -0.208 5.208 19 C -0.086 4.086 20 C 0.317 3.683 21 O -0.493 6.493 22 C -0.319 4.319 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.018 0.982 28 H 0.076 0.924 29 H 0.265 0.735 30 H 0.160 0.840 31 H 0.236 0.764 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.094 0.906 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.864 -17.975 -2.882 18.429 hybrid contribution -0.286 0.912 -0.519 1.087 sum -3.150 -17.063 -3.400 17.682 Atomic orbital electron populations 1.21918 0.77876 1.04088 1.02663 1.47355 1.08018 1.04785 1.75102 1.18732 0.90927 0.78801 0.96207 1.21687 1.36871 1.06536 0.93008 0.92563 1.25842 0.94910 0.96402 1.01881 1.70044 1.38942 1.14782 1.33128 0.85464 0.78785 0.77303 0.79225 1.18557 1.20645 1.20113 1.15971 0.85017 0.80799 0.78057 1.90887 1.13538 1.86442 1.58638 1.42428 1.10997 1.02300 1.78491 1.18094 0.90051 0.83577 0.90664 1.20929 1.02706 0.99043 1.03533 1.22383 0.96531 0.87719 0.89406 1.45558 1.32321 1.20006 1.22940 1.22441 0.98055 0.83073 1.05071 1.16666 0.81322 0.87880 0.82395 1.90915 1.69864 1.51883 1.36625 1.22216 1.10066 0.97469 1.02148 0.91158 0.90570 0.89409 0.95333 0.98157 0.92428 0.73528 0.83951 0.76432 0.88867 0.85880 0.90591 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.15 10.25 127.77 1.31 3.46 16 2 N -0.62 -25.55 2.86 -869.35 -2.48 -28.03 16 3 C 0.27 14.50 5.16 85.63 0.44 14.94 16 4 C -0.54 -30.33 9.39 25.60 0.24 -30.09 16 5 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.49 5.46 84.66 0.46 0.95 16 7 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 8 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 C 0.70 28.97 8.13 179.05 1.46 30.43 16 13 O -0.62 -31.42 15.02 -3.92 -0.06 -31.48 16 14 N -0.69 -20.73 5.13 -316.71 -1.63 -22.36 16 15 C 0.28 8.08 5.82 38.77 0.23 8.30 16 16 C -0.24 -6.12 8.85 22.21 0.20 -5.92 16 17 C 0.17 2.96 10.26 83.31 0.85 3.81 16 18 N -0.50 -10.48 2.99 -675.32 -2.02 -12.50 16 19 C 0.05 0.69 10.34 127.77 1.32 2.01 16 20 C 0.51 15.30 7.38 84.68 0.63 15.93 16 21 O -0.60 -21.92 16.61 -5.70 -0.09 -22.02 16 22 C -0.29 -8.63 9.96 22.72 0.23 -8.40 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 25 H 0.09 1.78 6.30 -2.38 -0.02 1.77 16 26 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 27 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 28 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.42 9.52 6.52 -92.71 -0.60 8.91 16 30 H 0.14 3.97 7.93 -2.91 -0.02 3.94 16 31 H 0.22 1.50 8.03 -2.91 -0.02 1.48 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.12 0.64 8.01 -2.39 -0.02 0.63 16 34 H 0.08 1.30 7.37 -2.38 -0.02 1.28 16 35 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -82.17 305.92 3.90 -78.27 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.51 Total: 12.06 kcal Atomic # 6 Polarization: 28.07 SS G_CDS: 7.36 Total: 35.43 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -5.84 Total: -117.87 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.15 Total: -53.50 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -82.17 3.90 -78.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603019495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.498 kcal (2) G-P(sol) polarization free energy of solvation -82.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds