Wall clock time and date at job start Sun Mar 29 2020 23:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47379 * 2 1 4 4 H 1.09008 * 109.46737 * 305.46001 * 3 2 1 5 5 C 1.50701 * 109.47048 * 185.45992 * 3 2 1 6 6 H 1.08004 * 119.99717 * 244.90722 * 5 3 2 7 7 C 1.37870 * 120.00174 * 64.91353 * 5 3 2 8 8 N 1.31522 * 120.00288 * 7.02622 * 7 5 3 9 9 Si 1.86799 * 120.00054 * 187.02743 * 7 5 3 10 10 H 1.48498 * 109.47214 * 84.98960 * 9 7 5 11 11 H 1.48498 * 109.47221 * 204.99428 * 9 7 5 12 12 H 1.48504 * 109.47100 * 324.99155 * 9 7 5 13 13 N 1.46496 * 109.46896 * 65.45757 * 3 2 1 14 14 C 1.38499 * 120.00256 * 275.00130 * 13 3 2 15 15 C 1.39916 * 120.50904 * 359.72239 * 14 13 3 16 16 C 1.39083 * 118.18043 * 179.78106 * 15 14 13 17 17 C 1.48355 * 120.51252 * 180.23617 * 16 15 14 18 18 O 1.21397 * 120.00017 * 0.25927 * 17 16 15 19 19 O 1.34638 * 120.00351 * 180.25924 * 17 16 15 20 20 C 1.45201 * 117.00207 * 179.97438 * 19 17 16 21 21 N 1.33367 * 118.97560 * 0.49461 * 16 15 14 22 22 C 1.31516 * 120.93447 * 359.74372 * 21 16 15 23 23 N 1.31877 * 122.01965 * 0.02562 * 22 21 16 24 24 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46776 * 299.99551 * 1 2 3 26 26 H 1.09000 * 109.46833 * 59.99939 * 1 2 3 27 27 H 1.08994 * 109.47457 * 120.00347 * 2 1 3 28 28 H 1.09006 * 109.47157 * 239.99990 * 2 1 3 29 29 H 0.96990 * 120.00177 * 179.97438 * 8 7 5 30 30 H 0.96999 * 120.00284 * 95.00495 * 13 3 2 31 31 H 1.07997 * 120.91129 * 359.97438 * 15 14 13 32 32 H 1.08998 * 109.46836 * 300.00208 * 20 19 17 33 33 H 1.09001 * 109.46858 * 60.00037 * 20 19 17 34 34 H 1.08999 * 109.46924 * 180.02562 * 20 19 17 35 35 H 1.07997 * 118.99511 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5991 1.9838 -0.8371 5 6 3.5410 1.4446 -0.1352 6 1 4.1554 1.8149 0.6722 7 6 4.1299 0.9738 -1.2895 8 7 3.3843 0.6527 -2.3243 9 14 5.9866 0.7922 -1.3838 10 1 6.3851 -0.5202 -0.8145 11 1 6.4201 0.8687 -2.8021 12 1 6.6307 1.8837 -0.6098 13 7 1.6620 2.0941 1.2564 14 6 0.4120 2.6764 1.3858 15 6 -0.4958 2.6535 0.3214 16 6 -1.7393 3.2488 0.5057 17 6 -2.7432 3.2499 -0.5865 18 8 -2.4841 2.7244 -1.6497 19 8 -3.9419 3.8336 -0.3987 20 6 -4.8745 3.7971 -1.5110 21 7 -2.0132 3.8231 1.6778 22 6 -1.1294 3.8271 2.6517 23 7 0.0588 3.2702 2.5200 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 3.7986 0.3219 -3.1365 30 1 2.2870 2.1178 1.9978 31 1 -0.2393 2.1838 -0.6166 32 1 -4.4343 4.3021 -2.3708 33 1 -5.0908 2.7607 -1.7698 34 1 -5.7981 4.3017 -1.2273 35 1 -1.3841 4.3016 3.5878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603341865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:57 Heat of formation + Delta-G solvation = -30.507256 kcal Electronic energy + Delta-G solvation = -20115.953686 eV Core-core repulsion = 16921.698247 eV Total energy + Delta-G solvation = -3194.255438 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91591 -39.83131 -36.90122 -36.40886 -33.72399 -32.61006 -31.18004 -30.40962 -28.05935 -26.93445 -24.85604 -23.79876 -22.96893 -21.15657 -20.08426 -18.23343 -18.04616 -16.83015 -16.35888 -16.20806 -15.63817 -15.00425 -14.80050 -14.70214 -14.24559 -13.84391 -13.44575 -13.29015 -12.94847 -12.81258 -12.12046 -11.96304 -11.55999 -11.23400 -11.07433 -10.81963 -10.76245 -10.74221 -10.54383 -10.32652 -10.28206 -9.85181 -9.55814 -9.25622 -8.95839 -8.61915 -7.40785 -6.31314 -4.38620 0.77969 1.64497 2.59522 2.69413 3.17598 3.24879 3.26195 3.71629 4.24227 4.27027 4.28522 4.73861 5.02538 5.07522 5.14719 5.15496 5.28048 5.45073 5.75917 5.82019 6.02297 6.14229 6.24029 6.29718 6.52717 6.67066 6.77269 6.94392 7.05669 7.20836 7.48927 7.52171 7.70011 7.82116 7.98432 8.32978 8.54874 8.72625 9.28340 10.76655 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.005342 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.540618 B = 5240.506726 C = 5880.739833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.126 4.126 3 C 0.266 3.734 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.065 0.935 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.444 3.556 15 C -0.213 4.213 16 C 0.150 3.850 17 C 0.525 3.475 18 O -0.488 6.488 19 O -0.335 6.335 20 C 0.033 3.967 21 N -0.543 5.543 22 C 0.330 3.670 23 N -0.582 5.582 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.268 0.732 30 H 0.403 0.597 31 H 0.167 0.833 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.617 3.606 4.181 11.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C 0.164 3.836 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.296 5.296 14 C 0.194 3.806 15 C -0.243 4.243 16 C 0.011 3.989 17 C 0.367 3.633 18 O -0.374 6.374 19 O -0.250 6.250 20 C -0.061 4.061 21 N -0.266 5.266 22 C 0.040 3.960 23 N -0.309 5.309 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.239 0.761 31 H 0.184 0.816 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.733 3.673 4.177 12.089 hybrid contribution 1.324 -0.580 -0.749 1.628 sum -9.409 3.093 3.428 10.481 Atomic orbital electron populations 1.22213 0.98740 0.99976 1.00371 1.21975 0.92374 0.99794 1.02407 1.19081 0.95775 0.88969 0.79726 0.92925 1.21068 0.89876 1.44299 1.02477 0.91653 1.24871 0.98899 0.94678 0.94882 1.69929 1.35739 1.42682 1.03302 0.86431 0.84390 0.78793 0.77392 1.20283 1.21021 1.19776 1.45590 1.10422 1.54744 1.18853 1.18698 0.87320 0.86571 0.87962 1.22633 0.93784 1.05068 1.02836 1.19812 0.91151 0.96337 0.91608 1.20885 0.81175 0.75166 0.86120 1.90875 1.78570 1.41698 1.26242 1.86671 1.24660 1.70956 1.42697 1.23324 0.91460 1.02899 0.88424 1.68301 1.35874 1.21723 1.00726 1.24469 0.83556 0.91219 0.96779 1.67959 1.21185 1.17031 1.24716 0.94324 0.94252 0.92595 0.93842 0.89087 0.92227 0.76150 0.81552 0.91791 0.91809 0.87977 0.78878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.23 37.16 0.31 -2.71 16 2 C -0.13 -2.74 5.49 -26.73 -0.15 -2.88 16 3 C 0.27 6.06 2.07 -69.08 -0.14 5.91 16 4 H 0.05 1.33 6.47 -51.92 -0.34 0.99 16 5 C -0.54 -13.39 8.67 -34.44 -0.30 -13.68 16 6 H 0.07 1.59 7.73 -52.48 -0.41 1.18 16 7 C 0.07 1.81 5.19 -17.82 -0.09 1.71 16 8 N -0.88 -23.28 12.01 55.43 0.67 -22.61 16 9 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.67 -13.36 5.16 -54.88 -0.28 -13.64 16 14 C 0.44 8.49 6.54 -154.86 -1.01 7.48 16 15 C -0.21 -4.09 6.34 -38.64 -0.24 -4.33 16 16 C 0.15 2.70 6.78 -82.72 -0.56 2.14 16 17 C 0.52 9.06 7.97 34.90 0.28 9.34 16 18 O -0.49 -9.24 16.20 -19.19 -0.31 -9.55 16 19 O -0.33 -4.96 10.42 -40.33 -0.42 -5.38 16 20 C 0.03 0.34 10.56 101.05 1.07 1.41 16 21 N -0.54 -9.16 10.25 -11.23 -0.12 -9.28 16 22 C 0.33 5.09 12.27 -92.32 -1.13 3.96 16 23 N -0.58 -10.19 10.45 -13.82 -0.14 -10.34 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.04 0.75 5.38 -51.93 -0.28 0.47 16 26 H 0.06 1.11 6.38 -51.93 -0.33 0.78 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 2.19 6.65 -51.93 -0.35 1.84 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.40 7.59 8.65 -40.82 -0.35 7.24 16 31 H 0.17 3.43 3.83 -52.49 -0.20 3.23 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.19 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 297.63 15.07 4.49 4.49 Total: -1.00 -27.80 297.63 -7.05 -34.85 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.92 Total: 8.33 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -1.98 Total: 8.34 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.12 Total: -55.87 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.73 Total: -14.92 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.80 -7.05 -34.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603341865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.343 kcal (2) G-P(sol) polarization free energy of solvation -27.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds