Wall clock time and date at job start Mon Mar 30 2020 00:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47115 * 2 1 4 4 C 1.42901 * 114.00084 * 179.97438 * 3 2 1 5 5 H 1.08997 * 115.55892 * 4.31993 * 4 3 2 6 6 C 1.53000 * 117.50286 * 218.62455 * 4 3 2 7 7 C 1.53003 * 117.49822 * 149.99927 * 4 3 2 8 8 H 1.09000 * 117.49568 * 359.97438 * 7 4 3 9 9 C 1.50700 * 117.50073 * 214.98217 * 7 4 3 10 10 O 1.21303 * 119.99816 * 0.02562 * 9 7 4 11 11 N 1.34777 * 119.99675 * 180.28026 * 9 7 4 12 12 C 1.40595 * 119.99527 * 179.72943 * 11 9 7 13 13 C 1.40649 * 126.08553 * 359.68015 * 12 11 9 14 14 N 1.30903 * 108.38945 * 179.87998 * 13 12 11 15 15 N 1.40074 * 108.40705 * 0.38914 * 14 13 12 16 16 C 1.37320 * 126.07077 * 179.73305 * 15 14 13 17 17 H 1.07999 * 120.00028 * 180.02562 * 16 15 14 18 18 C 1.38983 * 120.00055 * 0.02562 * 16 15 14 19 19 N 1.31296 * 119.99923 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46692 * 90.00217 * 20 18 16 22 22 H 1.48503 * 109.47299 * 209.99837 * 20 18 16 23 23 H 1.48503 * 109.47411 * 330.00357 * 20 18 16 24 24 C 1.35679 * 126.07814 * 179.97438 * 12 11 9 25 25 H 1.08997 * 109.47021 * 299.99612 * 1 2 3 26 26 H 1.08994 * 109.47255 * 60.00013 * 1 2 3 27 27 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47484 * 240.00302 * 2 1 3 29 29 H 1.08999 * 109.47402 * 120.00428 * 2 1 3 30 30 H 1.08994 * 117.49844 * 145.02029 * 6 4 3 31 31 H 1.09004 * 117.49532 * 0.02562 * 6 4 3 32 32 H 0.97001 * 120.00485 * 359.71840 * 11 9 7 33 33 H 1.07999 * 125.80209 * 0.02562 * 13 12 11 34 34 H 0.97004 * 120.00252 * 179.97438 * 19 18 16 35 35 H 1.07996 * 126.24928 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9771 0.5198 -0.0731 6 6 4.0511 2.5730 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 3.3583 3.4086 -1.1251 9 6 5.3542 2.5038 -1.3968 10 8 5.8844 1.4131 -1.4222 11 7 5.9407 3.5526 -2.0072 12 6 7.1673 3.3825 -2.6730 13 6 7.8944 2.1829 -2.7764 14 7 8.9795 2.4162 -3.4703 15 7 8.9929 3.7703 -3.8285 16 6 9.9693 4.4045 -4.5566 17 1 9.8801 5.4579 -4.7772 18 6 11.0725 3.6906 -5.0095 19 7 11.1807 2.4098 -4.7418 20 14 12.4004 4.5531 -6.0005 21 1 13.4361 5.0878 -5.0803 22 1 13.0240 3.5863 -6.9395 23 1 11.7968 5.6710 -6.7696 24 6 7.8629 4.3475 -3.3254 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.0053 2.3648 1.3315 31 1 3.3725 3.2188 1.4051 32 1 5.5166 4.4247 -1.9872 33 1 7.6052 1.2307 -2.3567 34 1 11.9504 1.9115 -5.0582 35 1 7.5753 5.3835 -3.4276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747430220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:24 Heat of formation + Delta-G solvation = 30.019634 kcal Electronic energy + Delta-G solvation = -19059.553138 eV Core-core repulsion = 15867.922343 eV Total energy + Delta-G solvation = -3191.630796 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05044 -39.14126 -37.91638 -35.11235 -34.13776 -33.11179 -30.98804 -30.22250 -27.91238 -25.25210 -23.69764 -23.06772 -22.15661 -20.93879 -19.83795 -19.38362 -17.81913 -17.13926 -16.26730 -15.70178 -15.43956 -15.32784 -14.86508 -14.48726 -14.05288 -13.67203 -13.19990 -12.97091 -12.82938 -12.74402 -12.45487 -12.15625 -11.67213 -11.41868 -11.36498 -11.25604 -11.10830 -10.93430 -10.57133 -10.52985 -10.12942 -9.38550 -9.15420 -9.10883 -8.79212 -8.04719 -6.68337 -6.54677 -4.21616 2.70539 2.99741 3.05038 3.10470 3.14239 3.61434 3.72327 3.88085 4.00913 4.44823 4.71901 4.75537 4.84259 4.90652 4.95868 5.03396 5.12584 5.22552 5.28343 5.41411 5.60363 5.67971 5.70169 5.89130 5.93315 6.26166 6.48032 6.92174 6.97404 7.08000 7.14367 7.25730 7.87152 8.20331 8.30609 8.64748 8.88400 9.39215 9.68289 10.41419 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.060949 B = 0.003202 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.290268 B = 8743.019593 C = 8930.859433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.359 6.359 4 C 0.051 3.949 5 H 0.126 0.874 6 C -0.157 4.157 7 C -0.185 4.185 8 H 0.126 0.874 9 C 0.528 3.472 10 O -0.540 6.540 11 N -0.618 5.618 12 C -0.060 4.060 13 C -0.034 4.034 14 N -0.260 5.260 15 N -0.143 5.143 16 C -0.323 4.323 17 H 0.116 0.884 18 C 0.046 3.954 19 N -0.770 5.770 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.084 4.084 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.398 0.602 33 H 0.176 0.824 34 H 0.275 0.725 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.725 0.758 7.794 16.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.277 6.277 4 C -0.008 4.008 5 H 0.143 0.857 6 C -0.195 4.195 7 C -0.207 4.207 8 H 0.144 0.856 9 C 0.314 3.686 10 O -0.418 6.418 11 N -0.260 5.260 12 C -0.166 4.166 13 C -0.209 4.209 14 N -0.092 5.092 15 N 0.089 4.911 16 C -0.455 4.455 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.397 5.397 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.235 4.235 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.231 0.769 33 H 0.192 0.808 34 H 0.085 0.915 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.249 -0.571 7.230 15.105 hybrid contribution -0.317 1.206 -0.166 1.259 sum -13.567 0.635 7.064 15.309 Atomic orbital electron populations 1.21751 0.93673 1.02334 1.03078 1.22562 0.95369 0.83361 1.00680 1.87785 1.18869 1.27037 1.94044 1.22611 0.81613 0.94607 1.01938 0.85689 1.23434 1.02947 1.01957 0.91160 1.22617 0.97634 1.04070 0.96346 0.85647 1.19315 0.85169 0.84322 0.79757 1.90582 1.64659 1.25534 1.60989 1.42419 1.20614 1.11253 1.51671 1.17292 0.91428 0.95769 1.12070 1.24104 0.94283 0.98287 1.04255 1.78248 1.19267 0.92563 1.19089 1.44551 1.11585 1.05589 1.29354 1.19867 0.99059 0.95023 1.31580 0.86625 1.25645 0.98743 0.95551 0.97202 1.70220 1.27219 1.06590 1.35679 0.85826 0.79934 0.79146 0.79221 1.19593 1.20093 1.18814 1.21266 0.93474 0.97873 1.10841 0.91902 0.91811 0.90974 0.92801 0.92988 0.87422 0.87414 0.76864 0.80762 0.91479 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.55 6.53 37.16 0.24 0.79 16 3 O -0.36 -4.39 10.60 -35.23 -0.37 -4.77 16 4 C 0.05 0.65 5.96 -26.73 -0.16 0.49 16 5 H 0.13 1.68 7.45 -51.93 -0.39 1.29 16 6 C -0.16 -1.79 10.18 -26.73 -0.27 -2.07 16 7 C -0.18 -2.46 6.14 -91.77 -0.56 -3.03 16 8 H 0.13 1.44 8.14 -51.93 -0.42 1.02 16 9 C 0.53 9.48 7.58 -10.98 -0.08 9.39 16 10 O -0.54 -11.67 13.41 5.54 0.07 -11.60 16 11 N -0.62 -11.30 5.47 -10.00 -0.05 -11.35 16 12 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 13 C -0.03 -0.91 10.85 -17.04 -0.18 -1.09 16 14 N -0.26 -7.69 10.40 30.80 0.32 -7.37 16 15 N -0.14 -3.98 3.74 -11.41 -0.04 -4.02 16 16 C -0.32 -8.63 10.25 -14.82 -0.15 -8.78 16 17 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 18 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.73 11.81 55.49 0.66 -21.08 16 20 Si 0.93 19.05 29.55 -169.99 -5.02 14.02 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 C -0.08 -2.00 11.49 -16.39 -0.19 -2.19 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 5.65 8.83 -40.82 -0.36 5.29 16 33 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.15 2.89 8.06 -52.49 -0.42 2.46 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -33.61 309.48 -5.84 -39.45 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.41 Total: 10.19 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.65 Total: -8.14 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.88 Total: -43.82 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.30 Total: -16.36 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.61 -5.84 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747430220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.467 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds