Wall clock time and date at job start Mon Mar 30 2020 00:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47115 * 2 1 4 4 C 1.42901 * 114.00084 * 179.97438 * 3 2 1 5 5 H 1.08997 * 115.55892 * 4.31993 * 4 3 2 6 6 C 1.53000 * 117.50286 * 218.62455 * 4 3 2 7 7 C 1.53003 * 117.49822 * 149.99927 * 4 3 2 8 8 H 1.09000 * 117.49568 * 359.97438 * 7 4 3 9 9 C 1.50700 * 117.50073 * 214.98217 * 7 4 3 10 10 O 1.21303 * 119.99816 * 0.02562 * 9 7 4 11 11 N 1.34777 * 119.99675 * 180.28026 * 9 7 4 12 12 C 1.40595 * 119.99527 * 179.72943 * 11 9 7 13 13 C 1.40649 * 126.08553 * 359.68015 * 12 11 9 14 14 N 1.30903 * 108.38945 * 179.87998 * 13 12 11 15 15 N 1.40074 * 108.40705 * 0.38914 * 14 13 12 16 16 C 1.37320 * 126.07077 * 179.73305 * 15 14 13 17 17 H 1.07999 * 120.00028 * 180.02562 * 16 15 14 18 18 C 1.38983 * 120.00055 * 0.02562 * 16 15 14 19 19 N 1.31296 * 119.99923 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46692 * 90.00217 * 20 18 16 22 22 H 1.48503 * 109.47299 * 209.99837 * 20 18 16 23 23 H 1.48503 * 109.47411 * 330.00357 * 20 18 16 24 24 C 1.35679 * 126.07814 * 179.97438 * 12 11 9 25 25 H 1.08997 * 109.47021 * 299.99612 * 1 2 3 26 26 H 1.08994 * 109.47255 * 60.00013 * 1 2 3 27 27 H 1.09000 * 109.47055 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47484 * 240.00302 * 2 1 3 29 29 H 1.08999 * 109.47402 * 120.00428 * 2 1 3 30 30 H 1.08994 * 117.49844 * 145.02029 * 6 4 3 31 31 H 1.09004 * 117.49532 * 0.02562 * 6 4 3 32 32 H 0.97001 * 120.00485 * 359.71840 * 11 9 7 33 33 H 1.07999 * 125.80209 * 0.02562 * 13 12 11 34 34 H 0.97004 * 120.00252 * 179.97438 * 19 18 16 35 35 H 1.07996 * 126.24928 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9771 0.5198 -0.0731 6 6 4.0511 2.5730 0.8478 7 6 4.0425 2.6875 -0.6779 8 1 3.3583 3.4086 -1.1251 9 6 5.3542 2.5038 -1.3968 10 8 5.8844 1.4131 -1.4222 11 7 5.9407 3.5526 -2.0072 12 6 7.1673 3.3825 -2.6730 13 6 7.8944 2.1829 -2.7764 14 7 8.9795 2.4162 -3.4703 15 7 8.9929 3.7703 -3.8285 16 6 9.9693 4.4045 -4.5566 17 1 9.8801 5.4579 -4.7772 18 6 11.0725 3.6906 -5.0095 19 7 11.1807 2.4098 -4.7418 20 14 12.4004 4.5531 -6.0005 21 1 13.4361 5.0878 -5.0803 22 1 13.0240 3.5863 -6.9395 23 1 11.7968 5.6710 -6.7696 24 6 7.8629 4.3475 -3.3254 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.0053 2.3648 1.3315 31 1 3.3725 3.2188 1.4051 32 1 5.5166 4.4247 -1.9872 33 1 7.6052 1.2307 -2.3567 34 1 11.9504 1.9115 -5.0582 35 1 7.5753 5.3835 -3.4276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747430220.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:24 Heat of formation + Delta-G solvation = 6.279697 kcal Electronic energy + Delta-G solvation = -19060.582579 eV Core-core repulsion = 15867.922343 eV Total energy + Delta-G solvation = -3192.660237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.76284 -40.65716 -39.08227 -36.22420 -35.79299 -34.94978 -32.25955 -31.70012 -29.76923 -27.08584 -25.14629 -23.78693 -23.13210 -22.82195 -21.44672 -21.09682 -19.41330 -18.49022 -17.60939 -17.33716 -16.79565 -16.48589 -16.19177 -16.03101 -15.55348 -15.15001 -14.94888 -14.81832 -13.73102 -13.61065 -13.47989 -13.38334 -13.26604 -13.02487 -12.91120 -12.83441 -12.16083 -12.08795 -11.89268 -11.87025 -11.57362 -11.01966 -10.85988 -10.72535 -10.19635 -10.11168 -8.54149 -8.47406 -6.24834 1.16874 1.39853 1.45434 1.57961 1.82809 1.94480 2.17556 2.44187 2.60039 2.88444 2.96363 3.08922 3.70136 3.83778 4.04856 4.11022 4.19204 4.34949 4.43548 4.47567 4.53279 4.59694 4.80848 4.91472 4.99435 5.01321 5.04044 5.10687 5.28488 5.28924 5.46763 5.95387 6.18919 6.30424 6.72960 6.74551 7.37587 7.46220 7.67174 8.52160 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.060949 B = 0.003202 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.290268 B = 8743.019593 C = 8930.859433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.366 6.366 4 C 0.046 3.954 5 H 0.111 0.889 6 C -0.134 4.134 7 C -0.186 4.186 8 H 0.152 0.848 9 C 0.527 3.473 10 O -0.580 6.580 11 N -0.611 5.611 12 C -0.046 4.046 13 C -0.061 4.061 14 N -0.310 5.310 15 N -0.168 5.168 16 C -0.354 4.354 17 H 0.142 0.858 18 C -0.008 4.008 19 N -0.826 5.826 20 Si 1.021 2.979 21 H -0.264 1.264 22 H -0.277 1.277 23 H -0.244 1.244 24 C -0.081 4.081 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.421 0.579 33 H 0.167 0.833 34 H 0.276 0.724 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.148 3.000 8.174 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.285 6.285 4 C -0.013 4.013 5 H 0.129 0.871 6 C -0.172 4.172 7 C -0.207 4.207 8 H 0.169 0.831 9 C 0.315 3.685 10 O -0.461 6.461 11 N -0.255 5.255 12 C -0.152 4.152 13 C -0.236 4.236 14 N -0.143 5.143 15 N 0.063 4.937 16 C -0.485 4.485 17 H 0.159 0.841 18 C -0.219 4.219 19 N -0.454 5.454 20 Si 0.839 3.161 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.167 1.167 24 C -0.231 4.231 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.122 0.878 31 H 0.154 0.846 32 H 0.258 0.742 33 H 0.184 0.816 34 H 0.086 0.914 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.735 1.706 7.636 16.684 hybrid contribution -0.030 0.452 -0.191 0.492 sum -14.766 2.159 7.444 16.677 Atomic orbital electron populations 1.21760 0.91972 1.03624 1.03030 1.22796 0.96756 0.82389 1.00954 1.87770 1.18143 1.28506 1.94089 1.22560 0.82122 0.94180 1.02475 0.87116 1.23522 1.03023 1.00962 0.89667 1.22553 0.95303 1.05481 0.97401 0.83051 1.20187 0.86208 0.83352 0.78760 1.90572 1.66093 1.27260 1.62166 1.42385 1.19024 1.12823 1.51235 1.17372 0.92652 0.94241 1.10956 1.24160 0.94987 0.99386 1.05089 1.78143 1.20877 0.94508 1.20724 1.44858 1.13097 1.05267 1.30499 1.20635 0.99506 0.96351 1.31991 0.84089 1.26910 1.01124 0.96063 0.97846 1.70404 1.28411 1.08839 1.37700 0.84575 0.76128 0.78069 0.77308 1.18843 1.20235 1.16672 1.22013 0.92115 0.99677 1.09278 0.91498 0.92249 0.89067 0.93380 0.91972 0.87775 0.84629 0.74166 0.81614 0.91393 0.79391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 10.28 71.98 0.74 -1.21 16 2 C 0.05 0.84 6.53 71.98 0.47 1.31 16 3 O -0.37 -8.28 10.60 -148.98 -1.58 -9.86 16 4 C 0.05 1.10 5.96 30.60 0.18 1.28 16 5 H 0.11 2.98 7.45 -2.39 -0.02 2.96 16 6 C -0.13 -2.71 10.18 30.60 0.31 -2.39 16 7 C -0.19 -4.55 6.14 -11.54 -0.07 -4.62 16 8 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 9 C 0.53 18.47 7.58 87.66 0.66 19.13 16 10 O -0.58 -25.64 13.41 -3.10 -0.04 -25.68 16 11 N -0.61 -21.41 5.47 -303.92 -1.66 -23.07 16 12 C -0.05 -2.16 6.90 37.73 0.26 -1.89 16 13 C -0.06 -3.40 10.85 85.42 0.93 -2.47 16 14 N -0.31 -19.05 10.40 -56.47 -0.59 -19.64 16 15 N -0.17 -9.47 3.74 -190.02 -0.71 -10.18 16 16 C -0.35 -18.89 10.25 84.01 0.86 -18.03 16 17 H 0.14 6.49 7.83 -2.91 -0.02 6.47 16 18 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 19 N -0.83 -48.20 11.81 21.66 0.26 -47.95 16 20 Si 1.02 38.79 29.55 68.60 2.03 40.82 16 21 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 22 H -0.28 -10.46 7.11 99.48 0.71 -9.75 16 23 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 24 C -0.08 -3.77 11.49 83.37 0.96 -2.81 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.42 10.74 8.83 -92.71 -0.82 9.93 16 33 H 0.17 9.33 5.92 -2.91 -0.02 9.31 16 34 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -76.29 309.48 3.77 -72.52 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.30 Total: 34.68 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.77 Total: -11.65 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -2.70 Total: -100.83 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.62 Total: -35.54 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -76.29 3.77 -72.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747430220.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.802 kcal (2) G-P(sol) polarization free energy of solvation -76.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds