Wall clock time and date at job start Mon Mar 30 2020 00:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99679 * 2 1 4 4 N 1.46505 * 109.47198 * 125.00053 * 3 2 1 5 5 C 1.34781 * 126.58692 * 124.97518 * 4 3 2 6 6 C 1.36672 * 106.83670 * 180.02562 * 5 4 3 7 7 C 1.47375 * 125.78290 * 180.02562 * 6 5 4 8 8 O 1.21517 * 119.99903 * 359.97438 * 7 6 5 9 9 O 1.34752 * 120.00289 * 180.02562 * 7 6 5 10 10 C 1.45197 * 117.00262 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.47230 * 329.99344 * 10 9 7 12 12 C 1.50697 * 109.47091 * 209.99994 * 10 9 7 13 13 H 1.08001 * 120.00098 * 359.97438 * 12 10 9 14 14 C 1.37884 * 120.00225 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99545 * 359.97438 * 14 12 10 16 16 Si 1.86791 * 120.00114 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47358 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47248 * 119.99788 * 16 14 12 19 19 H 1.48501 * 109.47543 * 239.99785 * 16 14 12 20 20 C 1.52998 * 109.47614 * 89.99431 * 10 9 7 21 21 C 1.53003 * 109.47209 * 295.00144 * 20 10 9 22 22 N 1.34440 * 108.43554 * 359.97438 * 6 5 4 23 23 N 1.28760 * 109.51404 * 359.97438 * 22 6 5 24 24 H 1.07992 * 119.99993 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.99672 * 179.97438 * 1 2 3 26 26 H 1.07992 * 119.99993 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47480 * 5.00269 * 3 2 1 28 28 H 1.08996 * 109.47312 * 244.99675 * 3 2 1 29 29 H 1.07992 * 126.58124 * 0.02562 * 5 4 3 30 30 H 0.97002 * 119.99842 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.46637 * 54.99933 * 20 10 9 32 32 H 1.08999 * 109.47190 * 175.00141 * 20 10 9 33 33 H 1.08993 * 109.47006 * 179.97438 * 21 20 10 34 34 H 1.09002 * 109.47033 * 300.00253 * 21 20 10 35 35 H 1.08999 * 109.46794 * 59.99420 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 4.3227 1.5494 1.0738 6 6 4.7902 1.4859 2.3566 7 6 6.1927 1.6647 2.7724 8 8 7.0491 1.8902 1.9403 9 8 6.5256 1.5770 4.0752 10 6 7.9255 1.7645 4.4120 11 1 8.5470 1.4303 3.5812 12 6 8.2580 0.9611 5.6428 13 1 7.4936 0.3692 6.1241 14 6 9.5382 0.9817 6.1545 15 7 10.4692 1.7022 5.5681 16 14 9.9502 -0.0135 7.6806 17 1 8.7368 -0.7327 8.1450 18 1 11.0147 -0.9973 7.3575 19 1 10.4268 0.8975 8.7521 20 6 8.1908 3.2467 4.6833 21 6 7.9730 4.0475 3.3979 22 7 3.7537 1.2338 3.1748 23 7 2.6725 1.1373 2.4822 24 1 -0.5400 0.9352 0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9313 29 1 4.9061 1.7376 0.1848 30 1 11.3697 1.7170 5.9283 31 1 7.5070 3.6031 5.4537 32 1 9.2188 3.3758 5.0219 33 1 8.1616 5.1034 3.5913 34 1 8.6568 3.6910 2.6275 35 1 6.9450 3.9183 3.0592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842770890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:37 Heat of formation + Delta-G solvation = 28.593789 kcal Electronic energy + Delta-G solvation = -19565.983053 eV Core-core repulsion = 16374.290429 eV Total energy + Delta-G solvation = -3191.692625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.11507 -39.28927 -36.24692 -35.72760 -33.46189 -32.93515 -31.37273 -30.73162 -27.59474 -27.07072 -24.10901 -22.88434 -22.35705 -20.92310 -20.36608 -19.49596 -17.96690 -16.61966 -16.32744 -16.10137 -15.59996 -15.33923 -15.07165 -14.67044 -14.41946 -13.91713 -13.11643 -12.85369 -12.76826 -12.16987 -12.06515 -11.83654 -11.43070 -11.27049 -11.19902 -11.10881 -10.91702 -10.59197 -10.46359 -10.22311 -10.04428 -9.85614 -9.67524 -9.32961 -9.20608 -8.74232 -8.40114 -6.13157 -4.18970 1.12869 1.44229 1.90114 2.27099 3.28653 3.35143 3.40258 3.56717 3.61538 4.13697 4.28452 4.36625 4.40951 4.58253 4.89530 4.97535 5.18808 5.26648 5.36600 5.38984 6.01610 6.04510 6.09611 6.27458 6.31476 6.35143 6.50143 6.91776 6.99340 7.21207 7.26439 7.66814 7.78443 7.93547 8.07197 8.21061 8.66820 8.95163 9.45750 10.93880 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.033170 B = 0.004140 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.925057 B = 6762.121500 C = 7298.185703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.180 4.180 3 C 0.152 3.848 4 N -0.365 5.365 5 C 0.089 3.911 6 C -0.072 4.072 7 C 0.542 3.458 8 O -0.514 6.514 9 O -0.334 6.334 10 C 0.220 3.780 11 H 0.049 0.951 12 C -0.518 4.518 13 H 0.071 0.929 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.911 3.089 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.136 4.136 21 C -0.143 4.143 22 N -0.178 5.178 23 N -0.067 5.067 24 H 0.102 0.898 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.206 0.794 30 H 0.265 0.735 31 H 0.043 0.957 32 H 0.110 0.890 33 H 0.033 0.967 34 H 0.053 0.947 35 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.592 0.133 -13.298 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.198 4.198 3 C 0.032 3.968 4 N -0.150 5.150 5 C -0.067 4.067 6 C -0.210 4.210 7 C 0.384 3.616 8 O -0.404 6.404 9 O -0.248 6.248 10 C 0.168 3.832 11 H 0.067 0.933 12 C -0.556 4.556 13 H 0.089 0.911 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.738 3.262 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.174 4.174 21 C -0.200 4.200 22 N -0.053 5.053 23 N -0.047 5.047 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.136 0.864 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.223 0.777 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -16.227 -0.025 -12.506 20.487 hybrid contribution 1.080 -0.229 -0.168 1.117 sum -15.146 -0.254 -12.674 19.751 Atomic orbital electron populations 1.23977 0.95457 1.02767 0.96641 1.22895 0.96387 0.97505 1.03049 1.21070 0.91923 0.98099 0.85719 1.50542 1.06458 1.48741 1.09257 1.23337 0.84713 0.98193 1.00408 1.20752 0.94130 1.16111 0.89958 1.19340 0.85403 0.73626 0.83226 1.90811 1.49598 1.46351 1.53647 1.86642 1.35619 1.79536 1.23032 1.20771 0.71938 0.93706 0.96807 0.93324 1.21108 0.95904 1.28003 1.10558 0.91098 1.24877 0.95600 0.95731 0.97766 1.69902 1.02818 1.39798 1.40230 0.86225 0.78471 0.79636 0.81876 1.19408 1.20825 1.20743 1.22028 1.04704 0.95295 0.95407 1.21862 1.00033 0.98496 0.99618 1.74846 0.96063 1.08169 1.26184 1.82047 1.17428 1.22203 0.83051 0.87927 0.87430 0.86378 0.88074 0.86889 0.77696 0.92511 0.93818 0.87239 0.94789 0.92753 0.95015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 14.32 29.01 0.42 -0.42 16 2 C -0.18 -1.22 9.72 -36.03 -0.35 -1.57 16 3 C 0.15 0.99 6.98 -5.19 -0.04 0.96 16 4 N -0.36 -4.27 3.68 -62.23 -0.23 -4.50 16 5 C 0.09 1.16 11.27 -16.82 -0.19 0.97 16 6 C -0.07 -1.31 7.02 -83.57 -0.59 -1.90 16 7 C 0.54 11.96 6.41 34.45 0.22 12.18 16 8 O -0.51 -11.68 14.05 -19.28 -0.27 -11.95 16 9 O -0.33 -8.49 9.81 -40.63 -0.40 -8.88 16 10 C 0.22 6.00 2.25 -27.89 -0.06 5.94 16 11 H 0.05 1.44 7.16 -51.93 -0.37 1.06 16 12 C -0.52 -14.89 8.90 -34.44 -0.31 -15.19 16 13 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 14 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 15 N -0.89 -25.31 11.30 55.43 0.63 -24.68 16 16 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.14 -3.46 5.49 -26.73 -0.15 -3.61 16 21 C -0.14 -3.17 8.57 37.16 0.32 -2.85 16 22 N -0.18 -3.39 12.39 32.83 0.41 -2.99 16 23 N -0.07 -1.06 13.63 60.35 0.82 -0.23 16 24 H 0.10 0.45 7.84 -52.49 -0.41 0.04 16 25 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 26 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 27 H 0.10 0.51 7.79 -51.93 -0.40 0.11 16 28 H 0.11 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.21 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 35 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -33.35 309.19 -4.52 -37.87 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -4.29 Total: -1.89 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.82 Total: -3.86 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 1.63 Total: -32.41 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.67 Total: -20.84 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.35 -4.52 -37.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842770890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.465 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds