Wall clock time and date at job start Mon Mar 30 2020 00:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47185 * 2 1 4 4 H 1.08997 * 109.46794 * 55.00307 * 3 2 1 5 5 C 1.50706 * 109.46765 * 175.00137 * 3 2 1 6 6 H 1.07998 * 119.99604 * 120.00310 * 5 3 2 7 7 C 1.37880 * 119.99702 * 300.00057 * 5 3 2 8 8 N 1.31509 * 120.00290 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99565 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46990 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47195 * 120.00324 * 9 7 5 12 12 H 1.48502 * 109.47059 * 240.00089 * 9 7 5 13 13 O 1.45196 * 109.47338 * 295.00088 * 3 2 1 14 14 C 1.34754 * 116.99814 * 90.00232 * 13 3 2 15 15 O 1.21512 * 120.00278 * 359.97438 * 14 13 3 16 16 C 1.47382 * 119.99862 * 179.97438 * 14 13 3 17 17 C 1.36663 * 125.78499 * 179.97438 * 16 14 13 18 18 N 1.34782 * 106.84332 * 179.97438 * 17 16 14 19 19 C 1.46496 * 126.58583 * 180.02562 * 18 17 16 20 20 C 1.52998 * 117.50060 * 343.61447 * 19 18 17 21 21 C 1.52998 * 60.00133 * 252.51267 * 20 19 18 22 22 N 1.40212 * 106.82317 * 0.02562 * 18 17 16 23 23 N 1.28754 * 108.38422 * 359.76068 * 22 18 17 24 24 H 1.08992 * 109.47644 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47199 * 300.00288 * 1 2 3 26 26 H 1.09008 * 109.46957 * 59.99238 * 1 2 3 27 27 H 1.09004 * 109.46759 * 240.00336 * 2 1 3 28 28 H 1.08994 * 109.46814 * 120.00684 * 2 1 3 29 29 H 0.97003 * 120.00335 * 179.97438 * 8 7 5 30 30 H 1.08004 * 126.57670 * 359.97438 * 17 16 14 31 31 H 1.09005 * 115.54800 * 129.33252 * 19 18 17 32 32 H 1.08996 * 117.50021 * 0.02562 * 20 19 18 33 33 H 1.09006 * 117.49461 * 145.02182 * 20 19 18 34 34 H 1.08997 * 117.49875 * 252.50917 * 21 20 19 35 35 H 1.09003 * 117.51584 * 107.48183 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4062 0.3364 2.1728 9 14 6.0050 0.8809 1.3817 10 1 6.5987 1.5459 0.1941 11 1 6.3991 1.6162 2.6102 12 1 6.4970 -0.5179 1.4628 13 8 1.6559 2.0917 -1.2406 14 6 0.4682 2.7280 -1.2559 15 8 -0.2277 2.7396 -0.2598 16 6 0.0132 3.4099 -2.4807 17 6 -1.1645 4.0875 -2.6275 18 7 -1.1904 4.5563 -3.8909 19 6 -2.2593 5.3460 -4.5075 20 6 -3.6197 5.3616 -3.8077 21 6 -3.4401 4.5850 -5.1136 22 7 0.0020 4.1429 -4.5017 23 7 0.6884 3.4746 -3.6415 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8293 -0.0621 2.9494 30 1 -1.9280 4.2217 -1.8754 31 1 -1.9396 6.2602 -5.0077 32 1 -3.7194 4.7847 -2.8883 33 1 -4.1954 6.2865 -3.8472 34 1 -3.8976 4.9988 -6.0122 35 1 -3.4216 3.4968 -5.0539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860695747.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:00:33 Heat of formation + Delta-G solvation = 15.292570 kcal Electronic energy + Delta-G solvation = -19751.058625 eV Core-core repulsion = 16558.789216 eV Total energy + Delta-G solvation = -3192.269409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.39253 -41.12842 -38.55585 -37.64215 -35.50609 -33.69681 -33.34952 -32.12957 -29.33955 -26.26702 -25.28854 -24.74350 -23.48718 -22.34639 -22.14133 -21.32111 -19.43862 -18.60892 -18.05105 -17.50054 -17.09983 -16.81345 -16.39745 -16.01593 -15.62781 -14.94017 -14.77287 -14.11770 -14.05253 -13.59563 -13.34488 -13.22665 -13.12429 -12.82674 -12.71709 -12.55853 -12.54585 -12.47088 -12.13973 -11.77683 -11.60340 -11.58641 -11.37699 -11.08934 -10.82397 -10.54048 -10.43891 -8.27042 -6.42949 -0.04469 0.40501 0.88105 1.41874 1.42608 1.56402 1.88938 1.98155 2.39335 2.50270 3.02221 3.10107 3.39812 3.59417 3.72135 3.80938 3.87327 4.18336 4.38639 4.40378 4.41690 4.60028 4.67153 4.74452 4.84525 4.93389 5.08201 5.09803 5.22456 5.35218 5.41585 5.51606 5.67262 5.91861 6.09880 6.56748 6.73418 6.98617 7.27672 8.80084 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.036697 B = 0.004295 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.820284 B = 6518.374511 C = 6945.677115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C 0.224 3.776 4 H 0.017 0.983 5 C -0.552 4.552 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.979 3.021 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.269 1.269 13 O -0.353 6.353 14 C 0.541 3.459 15 O -0.527 6.527 16 C -0.107 4.107 17 C 0.121 3.879 18 N -0.320 5.320 19 C 0.031 3.969 20 C -0.144 4.144 21 C -0.162 4.162 22 N -0.079 5.079 23 N -0.217 5.217 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.091 0.909 29 H 0.272 0.728 30 H 0.242 0.758 31 H 0.171 0.829 32 H 0.111 0.889 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.495 9.890 -11.576 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.169 4.169 3 C 0.171 3.829 4 H 0.035 0.965 5 C -0.590 4.590 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.803 3.197 10 H -0.194 1.194 11 H -0.197 1.197 12 H -0.194 1.194 13 O -0.268 6.268 14 C 0.384 3.616 15 O -0.417 6.417 16 C -0.245 4.245 17 C -0.037 4.037 18 N -0.103 5.103 19 C -0.070 4.070 20 C -0.182 4.182 21 C -0.200 4.200 22 N -0.059 5.059 23 N -0.090 5.090 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.258 0.742 31 H 0.188 0.812 32 H 0.129 0.871 33 H 0.169 0.831 34 H 0.160 0.840 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.827 9.814 -12.396 22.371 hybrid contribution 0.515 -0.228 1.225 1.349 sum -15.312 9.585 -11.171 21.240 Atomic orbital electron populations 1.21716 0.95951 1.00789 1.00236 1.21882 0.94834 0.97852 1.02298 1.20513 0.94639 0.89500 0.78252 0.96537 1.21339 0.90606 1.40135 1.06899 0.92274 1.25733 1.04122 0.93760 0.94235 1.69992 1.37255 1.37802 1.09820 0.85189 0.77837 0.78419 0.78283 1.19391 1.19750 1.19440 1.86622 1.34768 1.62569 1.42872 1.19810 0.80148 0.75714 0.85914 1.90777 1.55924 1.60121 1.34842 1.20482 0.97401 1.12802 0.93822 1.23628 0.98134 0.92856 0.89038 1.50206 1.16108 1.35738 1.08230 1.22745 0.80274 0.97600 1.06360 1.23751 0.92130 1.05045 0.97299 1.23629 0.96776 0.99851 0.99768 1.81956 0.91725 1.15000 1.17191 1.74813 1.23829 1.10366 1.00035 0.91849 0.93699 0.94833 0.94091 0.89083 0.91893 0.74152 0.81205 0.87070 0.83085 0.83992 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.56 71.98 0.62 -5.15 16 2 C -0.13 -6.82 5.49 30.59 0.17 -6.65 16 3 C 0.22 12.75 2.25 29.85 0.07 12.82 16 4 H 0.02 1.04 7.16 -2.39 -0.02 1.02 16 5 C -0.55 -32.94 8.90 25.60 0.23 -32.71 16 6 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -52.61 11.29 21.45 0.24 -52.37 16 9 Si 0.98 44.37 29.54 68.60 2.03 46.40 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 O -0.35 -18.81 9.81 -56.65 -0.56 -19.37 16 14 C 0.54 24.69 6.41 70.23 0.45 25.14 16 15 O -0.53 -24.48 14.05 19.80 0.28 -24.20 16 16 C -0.11 -4.00 7.02 40.78 0.29 -3.72 16 17 C 0.12 3.07 10.63 83.87 0.89 3.96 16 18 N -0.32 -7.28 3.96 -326.51 -1.29 -8.57 16 19 C 0.03 0.35 7.16 44.99 0.32 0.67 16 20 C -0.14 -0.69 10.00 30.59 0.31 -0.38 16 21 C -0.16 -1.19 10.46 30.59 0.32 -0.87 16 22 N -0.08 -2.53 13.78 37.02 0.51 -2.02 16 23 N -0.22 -8.52 12.39 -50.04 -0.62 -9.14 16 24 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.04 2.05 7.79 -2.39 -0.02 2.03 16 26 H 0.03 1.45 6.06 -2.38 -0.01 1.43 16 27 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 5.09 5.95 -2.39 -0.01 5.08 16 29 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.24 4.03 7.32 -2.91 -0.02 4.01 16 31 H 0.17 1.28 8.14 -2.38 -0.02 1.27 16 32 H 0.11 0.57 7.08 -2.39 -0.02 0.55 16 33 H 0.15 -0.11 8.14 -2.38 -0.02 -0.13 16 34 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -75.38 304.63 5.80 -69.58 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.11 Total: 4.91 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 4.10 Total: -5.22 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.16 Total: -72.10 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.28 Total: -43.56 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -75.38 5.80 -69.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860695747.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.869 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds