Wall clock time and date at job start Mon Mar 30 2020 00:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47637 * 2 1 4 4 C 1.53005 * 109.47028 * 119.99689 * 2 1 3 5 5 O 1.42896 * 109.46756 * 54.99995 * 4 2 1 6 6 N 1.46496 * 109.47259 * 239.99777 * 2 1 3 7 7 C 1.34774 * 120.00207 * 85.00019 * 6 2 1 8 8 O 1.21575 * 119.99910 * 0.02562 * 7 6 2 9 9 N 1.34778 * 120.00227 * 179.97438 * 7 6 2 10 10 C 1.39247 * 119.99937 * 185.15114 * 9 7 6 11 11 C 1.39682 * 119.57489 * 174.62652 * 10 9 7 12 12 C 1.38649 * 119.49721 * 179.97438 * 11 10 9 13 13 C 1.38352 * 118.67146 * 0.02562 * 12 11 10 14 14 C 1.40576 * 119.13007 * 359.97438 * 13 12 11 15 15 C 1.41336 * 119.78953 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99791 * 0.02562 * 15 14 13 17 17 C 1.40028 * 119.99975 * 179.97438 * 15 14 13 18 18 N 1.30744 * 119.99915 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99536 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47524 * 60.00348 * 19 17 15 21 21 H 1.48504 * 109.46695 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47282 * 300.00081 * 19 17 15 23 23 N 1.31909 * 119.57710 * 354.35129 * 10 9 7 24 24 H 1.09007 * 109.46775 * 60.00141 * 1 2 3 25 25 H 1.09000 * 109.47637 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47642 * 300.00696 * 1 2 3 27 27 H 1.09006 * 109.47111 * 174.99828 * 4 2 1 28 28 H 1.08999 * 109.46969 * 295.00265 * 4 2 1 29 29 H 0.96699 * 114.00085 * 179.97438 * 5 4 2 30 30 H 0.97002 * 120.00195 * 264.99733 * 6 2 1 31 31 H 0.96998 * 120.00240 * 5.15322 * 9 7 6 32 32 H 1.08003 * 120.25649 * 359.97438 * 11 10 9 33 33 H 1.08006 * 120.66650 * 180.02562 * 12 11 10 34 34 H 1.07996 * 120.43965 * 179.97438 * 13 12 11 35 35 H 0.96998 * 119.99205 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.4701 -2.0303 1.3095 6 7 2.0183 -0.6906 -1.1961 7 6 2.1470 -0.0184 -2.3571 8 8 1.8583 1.1613 -2.4116 9 7 2.5968 -0.6536 -3.4574 10 6 2.8319 0.0631 -4.6279 11 6 3.4037 -0.5810 -5.7276 12 6 3.6366 0.1340 -6.8924 13 6 3.2930 1.4737 -6.9289 14 6 2.7207 2.0646 -5.7889 15 6 2.3638 3.4320 -5.8110 16 1 2.5307 4.0193 -6.7019 17 6 1.7930 4.0250 -4.6782 18 7 1.5905 3.3139 -3.5999 19 14 1.3208 5.8321 -4.7078 20 1 0.3179 6.0643 -5.7781 21 1 0.7415 6.2138 -3.3947 22 1 2.5280 6.6549 -4.9737 23 7 2.5067 1.3401 -4.6858 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.1263 -0.7995 1.2057 28 1 1.7515 -0.1582 2.1370 29 1 1.7504 -2.5463 2.0778 30 1 2.2490 -1.6318 -1.1525 31 1 2.7567 -1.6100 -3.4339 32 1 3.6625 -1.6281 -5.6710 33 1 4.0774 -0.3452 -7.7541 34 1 3.4621 2.0578 -7.8213 35 1 1.1955 3.7248 -2.8152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881148770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:06 Heat of formation + Delta-G solvation = -18.469187 kcal Electronic energy + Delta-G solvation = -20214.076755 eV Core-core repulsion = 17020.343327 eV Total energy + Delta-G solvation = -3193.733429 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50508 -38.01202 -37.01846 -34.49807 -33.74847 -32.91071 -30.55274 -30.15329 -28.52086 -26.34946 -25.43520 -22.47337 -21.28115 -20.52415 -19.71348 -18.08595 -17.50865 -17.03178 -16.18758 -15.35926 -14.75595 -14.59133 -14.37296 -13.98774 -13.81806 -13.53140 -12.92407 -12.87484 -12.63357 -12.31570 -11.91199 -11.79589 -11.26928 -11.07092 -10.91419 -10.78883 -10.59890 -10.39825 -10.18165 -9.88657 -9.61826 -9.02103 -8.95535 -8.36714 -7.88424 -7.13572 -6.86563 -6.04158 -4.32678 2.91440 3.19584 3.20422 3.22546 3.33280 3.34723 4.12055 4.12829 4.34302 4.82918 4.97323 5.02260 5.14006 5.31567 5.66671 5.77149 5.98407 6.11926 6.15041 6.27477 6.54832 6.58660 6.69836 6.87738 6.91529 7.12674 7.31182 7.44444 7.47441 7.69305 7.83498 7.88203 8.24474 8.37374 8.76143 8.88279 9.13013 9.69913 10.34537 10.56569 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.006757 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.006216 B = 4142.698333 C = 5575.903178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.169 3.831 3 H 0.097 0.903 4 C 0.068 3.932 5 O -0.569 6.569 6 N -0.752 5.752 7 C 0.663 3.337 8 O -0.465 6.465 9 N -0.674 5.674 10 C 0.387 3.613 11 C -0.359 4.359 12 C -0.036 4.036 13 C -0.308 4.308 14 C 0.271 3.729 15 C -0.426 4.426 16 H 0.081 0.919 17 C 0.056 3.944 18 N -0.648 5.648 19 Si 0.894 3.106 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 N -0.471 5.471 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.376 0.624 30 H 0.387 0.613 31 H 0.394 0.606 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -7.915 10.239 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.115 0.885 4 C -0.010 4.010 5 O -0.374 6.374 6 N -0.412 5.412 7 C 0.361 3.639 8 O -0.329 6.329 9 N -0.322 5.322 10 C 0.148 3.852 11 C -0.385 4.385 12 C -0.060 4.060 13 C -0.331 4.331 14 C 0.146 3.854 15 C -0.457 4.457 16 H 0.099 0.901 17 C -0.173 4.173 18 N -0.266 5.266 19 Si 0.719 3.281 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.193 1.193 23 N -0.190 5.190 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.220 0.780 31 H 0.227 0.773 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.713 -6.077 10.637 12.271 hybrid contribution 0.683 -0.875 -0.154 1.121 sum -0.030 -6.952 10.483 12.579 Atomic orbital electron populations 1.22071 0.95453 1.02096 1.01995 1.20695 0.94482 0.96438 0.82118 0.88469 1.22543 0.96762 0.83942 0.97738 1.86516 1.73004 1.27440 1.50435 1.45292 1.73610 1.13293 1.08990 1.16476 0.80759 0.86472 0.80176 1.91374 1.48669 1.11064 1.81799 1.42576 1.69293 1.10409 1.09940 1.18359 0.92397 0.90989 0.83500 1.20445 1.22324 0.99400 0.96348 1.20536 0.96076 0.94028 0.95355 1.21612 1.15359 0.95493 1.00648 1.18391 0.88068 0.93056 0.85860 1.19528 1.33948 0.93344 0.98877 0.90092 1.26189 0.96160 0.99138 0.95815 1.70349 1.21689 1.34354 1.00223 0.86618 0.79552 0.83820 0.78152 1.19239 1.20477 1.19257 1.68708 1.22385 1.01940 1.25919 0.91734 0.92211 0.92727 0.93147 0.92512 0.77776 0.78006 0.77283 0.89203 0.88693 0.88655 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.29 37.15 0.35 -1.93 16 2 C 0.17 2.41 2.98 -67.93 -0.20 2.20 16 3 H 0.10 1.58 7.58 -51.93 -0.39 1.18 16 4 C 0.07 0.69 6.79 37.16 0.25 0.94 16 5 O -0.57 -5.42 12.51 -35.23 -0.44 -5.87 16 6 N -0.75 -11.93 5.06 -58.68 -0.30 -12.22 16 7 C 0.66 14.10 8.49 -86.92 -0.74 13.36 16 8 O -0.46 -12.06 11.77 5.30 0.06 -12.00 16 9 N -0.67 -13.98 5.39 -15.79 -0.09 -14.06 16 10 C 0.39 9.79 7.43 -154.99 -1.15 8.64 16 11 C -0.36 -8.33 9.95 -38.89 -0.39 -8.71 16 12 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 13 C -0.31 -7.96 9.83 -38.66 -0.38 -8.34 16 14 C 0.27 7.83 6.55 -84.99 -0.56 7.27 16 15 C -0.43 -12.00 9.14 -37.73 -0.34 -12.35 16 16 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 17 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 18 N -0.65 -18.35 8.98 55.55 0.50 -17.85 16 19 Si 0.89 19.64 29.56 -169.99 -5.02 14.61 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 23 N -0.47 -13.61 5.74 -10.26 -0.06 -13.67 16 24 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 25 H 0.06 0.85 7.56 -51.93 -0.39 0.46 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.38 1.82 9.12 45.56 0.42 2.23 16 30 H 0.39 5.17 8.40 -40.82 -0.34 4.82 16 31 H 0.39 6.41 8.71 -40.82 -0.36 6.05 16 32 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 33 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 300.66 15.07 4.53 4.53 Total: -1.00 -34.48 300.66 -8.05 -42.53 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -3.57 Total: 12.72 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -3.66 Total: 1.28 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 0.06 Total: -57.80 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.38 Total: -17.87 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.48 -8.05 -42.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.057 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds