Wall clock time and date at job start Mon Mar 30 2020 00:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47637 * 2 1 4 4 C 1.53005 * 109.47028 * 119.99689 * 2 1 3 5 5 O 1.42896 * 109.46756 * 54.99995 * 4 2 1 6 6 N 1.46496 * 109.47259 * 239.99777 * 2 1 3 7 7 C 1.34774 * 120.00207 * 85.00019 * 6 2 1 8 8 O 1.21575 * 119.99910 * 0.02562 * 7 6 2 9 9 N 1.34778 * 120.00227 * 179.97438 * 7 6 2 10 10 C 1.39247 * 119.99937 * 185.15114 * 9 7 6 11 11 C 1.39682 * 119.57489 * 174.62652 * 10 9 7 12 12 C 1.38649 * 119.49721 * 179.97438 * 11 10 9 13 13 C 1.38352 * 118.67146 * 0.02562 * 12 11 10 14 14 C 1.40576 * 119.13007 * 359.97438 * 13 12 11 15 15 C 1.41336 * 119.78953 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99791 * 0.02562 * 15 14 13 17 17 C 1.40028 * 119.99975 * 179.97438 * 15 14 13 18 18 N 1.30744 * 119.99915 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99536 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47524 * 60.00348 * 19 17 15 21 21 H 1.48504 * 109.46695 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47282 * 300.00081 * 19 17 15 23 23 N 1.31909 * 119.57710 * 354.35129 * 10 9 7 24 24 H 1.09007 * 109.46775 * 60.00141 * 1 2 3 25 25 H 1.09000 * 109.47637 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47642 * 300.00696 * 1 2 3 27 27 H 1.09006 * 109.47111 * 174.99828 * 4 2 1 28 28 H 1.08999 * 109.46969 * 295.00265 * 4 2 1 29 29 H 0.96699 * 114.00085 * 179.97438 * 5 4 2 30 30 H 0.97002 * 120.00195 * 264.99733 * 6 2 1 31 31 H 0.96998 * 120.00240 * 5.15322 * 9 7 6 32 32 H 1.08003 * 120.25649 * 359.97438 * 11 10 9 33 33 H 1.08006 * 120.66650 * 180.02562 * 12 11 10 34 34 H 1.07996 * 120.43965 * 179.97438 * 13 12 11 35 35 H 0.96998 * 119.99205 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.4701 -2.0303 1.3095 6 7 2.0183 -0.6906 -1.1961 7 6 2.1470 -0.0184 -2.3571 8 8 1.8583 1.1613 -2.4116 9 7 2.5968 -0.6536 -3.4574 10 6 2.8319 0.0631 -4.6279 11 6 3.4037 -0.5810 -5.7276 12 6 3.6366 0.1340 -6.8924 13 6 3.2930 1.4737 -6.9289 14 6 2.7207 2.0646 -5.7889 15 6 2.3638 3.4320 -5.8110 16 1 2.5307 4.0193 -6.7019 17 6 1.7930 4.0250 -4.6782 18 7 1.5905 3.3139 -3.5999 19 14 1.3208 5.8321 -4.7078 20 1 0.3179 6.0643 -5.7781 21 1 0.7415 6.2138 -3.3947 22 1 2.5280 6.6549 -4.9737 23 7 2.5067 1.3401 -4.6858 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.1263 -0.7995 1.2057 28 1 1.7515 -0.1582 2.1370 29 1 1.7504 -2.5463 2.0778 30 1 2.2490 -1.6318 -1.1525 31 1 2.7567 -1.6100 -3.4339 32 1 3.6625 -1.6281 -5.6710 33 1 4.0774 -0.3452 -7.7541 34 1 3.4621 2.0578 -7.8213 35 1 1.1955 3.7248 -2.8152 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881148770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:06 Heat of formation + Delta-G solvation = -45.292136 kcal Electronic energy + Delta-G solvation = -20215.239886 eV Core-core repulsion = 17020.343327 eV Total energy + Delta-G solvation = -3194.896559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.15274 -39.66844 -38.17321 -36.00501 -35.33280 -34.79887 -32.23900 -31.87834 -30.30218 -27.45551 -27.26864 -24.17619 -23.16014 -21.95956 -21.25783 -19.81674 -18.84651 -18.27504 -17.94466 -16.75782 -16.31074 -16.22741 -16.06903 -15.61665 -15.16007 -15.04449 -14.64532 -14.32899 -14.13555 -13.75982 -13.60665 -13.20862 -12.85344 -12.71382 -12.54880 -12.37010 -12.29416 -11.89870 -11.77122 -11.47377 -10.91950 -10.83962 -10.78871 -9.89072 -9.78850 -9.08035 -8.75871 -7.99520 -6.39014 0.99375 1.30719 1.40022 1.51843 1.55159 1.85692 2.28329 2.59810 3.06244 3.36058 3.49551 3.96791 4.09666 4.20931 4.37785 4.47135 4.62741 4.69958 4.74794 4.85994 4.89277 4.98579 5.07982 5.08791 5.29783 5.38580 5.69219 5.81014 5.88729 5.94676 6.07051 6.34627 6.45258 6.84630 6.98200 7.09854 7.30769 8.06020 8.40901 8.61020 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.017773 B = 0.006757 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.006216 B = 4142.698333 C = 5575.903178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.160 3.840 3 H 0.072 0.928 4 C 0.084 3.916 5 O -0.582 6.582 6 N -0.730 5.730 7 C 0.655 3.345 8 O -0.515 6.515 9 N -0.663 5.663 10 C 0.364 3.636 11 C -0.348 4.348 12 C -0.033 4.033 13 C -0.331 4.331 14 C 0.237 3.763 15 C -0.467 4.467 16 H 0.085 0.915 17 C 0.009 3.991 18 N -0.684 5.684 19 Si 0.974 3.026 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.260 1.260 23 N -0.506 5.506 24 H 0.022 0.978 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.399 0.601 30 H 0.404 0.596 31 H 0.416 0.584 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -9.436 11.058 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.054 3.946 3 H 0.090 0.910 4 C 0.005 3.995 5 O -0.391 6.391 6 N -0.390 5.390 7 C 0.354 3.646 8 O -0.382 6.382 9 N -0.314 5.314 10 C 0.124 3.876 11 C -0.373 4.373 12 C -0.057 4.057 13 C -0.355 4.355 14 C 0.111 3.889 15 C -0.498 4.498 16 H 0.104 0.896 17 C -0.217 4.217 18 N -0.303 5.303 19 Si 0.795 3.205 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.184 1.184 23 N -0.226 5.226 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.250 0.750 30 H 0.239 0.761 31 H 0.253 0.747 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.122 0.878 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.191 -7.701 11.498 13.840 hybrid contribution 0.571 -0.632 -0.401 0.941 sum 0.380 -8.333 11.097 13.883 Atomic orbital electron populations 1.21963 0.95612 1.01986 1.01034 1.20881 0.94367 0.96057 0.83277 0.90990 1.22308 0.97006 0.84343 0.95823 1.86448 1.73251 1.27215 1.52200 1.45077 1.72324 1.13833 1.07795 1.16784 0.80361 0.86234 0.81269 1.91365 1.50701 1.13436 1.82743 1.42435 1.68834 1.11272 1.08827 1.18871 0.92508 0.90720 0.85478 1.20921 1.19908 1.01197 0.95287 1.21018 0.94804 0.93085 0.96815 1.21802 1.16240 0.97094 1.00314 1.18893 0.88994 0.93946 0.87065 1.19870 1.36029 0.94039 0.99890 0.89645 1.27057 0.95624 1.04006 0.95006 1.70565 1.22743 1.36270 1.00675 0.85407 0.79347 0.77478 0.78296 1.18519 1.19909 1.18438 1.68668 1.23580 1.03769 1.26558 0.95903 0.91693 0.90472 0.92144 0.90104 0.75048 0.76112 0.74731 0.85114 0.84455 0.87759 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.29 71.98 0.67 -3.56 16 2 C 0.16 4.47 2.98 44.99 0.13 4.60 16 3 H 0.07 2.41 7.58 -2.39 -0.02 2.39 16 4 C 0.08 1.46 6.79 71.98 0.49 1.95 16 5 O -0.58 -9.19 12.51 -148.98 -1.86 -11.05 16 6 N -0.73 -22.71 5.06 -457.84 -2.32 -25.03 16 7 C 0.66 28.29 8.49 179.05 1.52 29.81 16 8 O -0.51 -27.93 11.77 -3.95 -0.05 -27.98 16 9 N -0.66 -27.19 5.39 -322.12 -1.74 -28.93 16 10 C 0.36 18.40 7.43 133.26 0.99 19.39 16 11 C -0.35 -15.36 9.95 22.72 0.23 -15.13 16 12 C -0.03 -1.48 10.15 22.40 0.23 -1.25 16 13 C -0.33 -17.23 9.83 22.87 0.22 -17.01 16 14 C 0.24 14.10 6.55 40.19 0.26 14.36 16 15 C -0.47 -27.39 9.14 23.47 0.21 -27.18 16 16 H 0.09 4.67 7.85 -2.91 -0.02 4.65 16 17 C 0.01 0.49 5.50 85.29 0.47 0.96 16 18 N -0.68 -40.65 8.98 21.84 0.20 -40.46 16 19 Si 0.97 41.77 29.56 68.60 2.03 43.80 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 N -0.51 -30.19 5.74 -186.36 -1.07 -31.26 16 24 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.06 1.77 7.56 -2.39 -0.02 1.75 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 27 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.40 2.35 9.12 -74.06 -0.68 1.67 16 30 H 0.40 9.98 8.40 -92.71 -0.78 9.21 16 31 H 0.42 12.72 8.71 -92.71 -0.81 11.92 16 32 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 33 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 34 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 35 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 Total: -1.00 -79.10 300.66 -0.50 -79.61 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -1.12 Total: 34.35 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 5.42 Total: 6.95 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -4.93 Total: -125.67 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.91 Total: -39.03 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -79.10 -0.50 -79.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881148770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.314 kcal (2) G-P(sol) polarization free energy of solvation -79.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds