Wall clock time and date at job start Mon Mar 30 2020 00:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46909 * 109.46963 * 2 1 4 4 C 1.46894 * 110.99821 * 299.20880 * 3 2 1 5 5 C 1.50697 * 109.47599 * 293.45355 * 4 3 2 6 6 H 1.08002 * 119.99893 * 354.95958 * 5 4 3 7 7 C 1.37876 * 120.00307 * 174.97093 * 5 4 3 8 8 N 1.31510 * 120.00053 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46915 * 59.99538 * 9 7 5 11 11 H 1.48499 * 109.47008 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46946 * 299.99573 * 9 7 5 13 13 C 1.46901 * 110.99778 * 63.16453 * 3 2 1 14 14 C 1.50704 * 109.47165 * 66.04648 * 13 3 2 15 15 C 1.38665 * 120.41638 * 259.99896 * 14 13 3 16 16 C 1.38630 * 118.41745 * 180.23018 * 15 14 13 17 17 C 1.38229 * 119.16092 * 359.52346 * 16 15 14 18 18 N 1.31853 * 120.75999 * 0.48802 * 17 16 15 19 19 C 1.31882 * 121.72977 * 359.73832 * 18 17 16 20 20 N 1.48013 * 119.61493 * 179.97438 * 19 18 17 21 21 O 1.21811 * 119.99618 * 180.02562 * 20 19 18 22 22 O 1.21792 * 120.00646 * 0.02636 * 20 19 18 23 23 H 1.08999 * 109.46887 * 300.50724 * 1 2 3 24 24 H 1.08990 * 109.47166 * 60.51553 * 1 2 3 25 25 H 1.09001 * 109.46542 * 180.51760 * 1 2 3 26 26 H 1.09003 * 109.47258 * 240.00159 * 2 1 3 27 27 H 1.09002 * 109.47734 * 120.00272 * 2 1 3 28 28 H 1.09007 * 109.47361 * 53.45390 * 4 3 2 29 29 H 1.09001 * 109.47158 * 173.44865 * 4 3 2 30 30 H 0.97001 * 120.00149 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46850 * 306.04755 * 13 3 2 32 32 H 1.08998 * 109.46711 * 186.04756 * 13 3 2 33 33 H 1.07998 * 120.79243 * 359.95529 * 15 14 13 34 34 H 1.07998 * 120.41924 * 179.73191 * 16 15 14 35 35 H 1.07998 * 119.61562 * 180.25277 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5641 2.1044 -1.1970 5 6 2.2117 1.5065 -2.4193 6 1 2.9546 0.7300 -2.3117 7 6 1.8560 1.9509 -3.6751 8 7 0.9512 2.8962 -3.8063 9 14 2.6593 1.2101 -5.1903 10 1 2.3830 -0.2483 -5.2341 11 1 2.1071 1.8550 -6.4086 12 1 4.1261 1.4345 -5.1325 13 6 1.6114 2.0877 1.2238 14 6 2.2967 1.4652 2.4129 15 6 1.6200 0.5638 3.2206 16 6 2.2887 0.0199 4.3064 17 6 3.6016 0.3839 4.5402 18 7 4.2136 1.2444 3.7505 19 6 3.6073 1.7851 2.7116 20 7 4.3389 2.7465 1.8565 21 8 3.7855 3.2504 0.8954 22 8 5.4942 3.0338 2.1136 23 1 -0.3633 0.5217 0.8854 24 1 -0.3633 0.5058 -0.8945 25 1 -0.3632 -1.0277 0.0093 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.4806 2.0196 -1.2816 29 1 1.8410 3.1556 -1.1165 30 1 0.7007 3.2085 -4.6898 31 1 0.5310 2.0089 1.3447 32 1 1.8932 3.1381 1.1507 33 1 0.5951 0.2953 3.0116 34 1 1.7914 -0.6820 4.9593 35 1 4.1308 -0.0385 5.3815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886030539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:52 Heat of formation + Delta-G solvation = 57.207926 kcal Electronic energy + Delta-G solvation = -20596.632856 eV Core-core repulsion = 17406.181033 eV Total energy + Delta-G solvation = -3190.451823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.92974 -40.33594 -37.54258 -36.00720 -33.37933 -32.67131 -32.19131 -29.58736 -27.81362 -26.57970 -25.08908 -23.43607 -23.03696 -22.22971 -19.67688 -19.07256 -18.24300 -17.18453 -16.79827 -16.32772 -15.98634 -15.15512 -15.06749 -14.59749 -14.28448 -13.96083 -13.61927 -13.13187 -12.85748 -12.12021 -12.03951 -11.86875 -11.25112 -11.05733 -10.99638 -10.79131 -10.61196 -10.55950 -10.41783 -10.29787 -10.16271 -9.92956 -9.75405 -9.58183 -9.17720 -8.37972 -7.28667 -5.97992 -3.98056 -0.08937 0.71717 1.45596 1.55703 3.24681 3.37007 3.41298 3.45274 3.95187 4.25037 4.37268 4.43750 4.49566 4.70746 5.01239 5.07716 5.38036 5.40680 5.53858 5.61138 5.76599 5.83754 5.93034 6.02939 6.07943 6.24720 6.60585 6.76838 6.78970 7.14033 7.31297 7.39198 7.81229 8.09521 8.16035 8.18025 8.53975 9.07888 9.65200 11.12689 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.006175 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.654950 B = 4533.283195 C = 5187.762145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 N -0.518 5.518 4 C 0.194 3.806 5 C -0.502 4.502 6 H 0.059 0.941 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.069 3.931 14 C -0.036 4.036 15 C -0.073 4.073 16 C -0.129 4.129 17 C 0.105 3.895 18 N -0.436 5.436 19 C 0.183 3.817 20 N 0.027 4.973 21 O -0.092 6.092 22 O -0.161 6.161 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.004 0.996 29 H 0.037 0.963 30 H 0.261 0.739 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 -6.293 16.907 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.073 4.073 3 N -0.242 5.242 4 C 0.070 3.930 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.059 4.059 14 C -0.041 4.041 15 C -0.100 4.100 16 C -0.149 4.149 17 C -0.056 4.056 18 N -0.148 5.148 19 C -0.033 4.033 20 N 0.550 4.450 21 O -0.316 6.316 22 O -0.373 6.373 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.021 0.979 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.733 -6.386 17.310 18.465 hybrid contribution -1.109 -0.481 -1.136 1.659 sum -1.842 -6.867 16.174 17.668 Atomic orbital electron populations 1.22395 0.99084 1.01007 1.02243 1.22058 0.92367 0.91739 1.01161 1.62409 1.59022 1.01477 1.01306 1.19800 0.94232 0.94237 0.84703 1.21041 1.22293 1.20855 0.89906 0.92232 1.24923 0.95254 0.95244 0.98934 1.69934 1.31749 1.28687 1.23436 0.86607 0.79905 0.79038 0.82126 1.20507 1.21395 1.20127 1.21502 0.96229 1.00420 0.87797 1.20866 0.91773 0.94243 0.97226 1.21725 1.01353 0.93849 0.93043 1.22526 0.95832 0.99192 0.97376 1.22740 0.92328 0.93060 0.97440 1.66460 1.38487 1.07532 1.02349 1.21420 0.89837 0.97768 0.94304 1.43281 1.00939 1.00283 1.00504 1.94671 1.69203 1.51805 1.15875 1.94520 1.01118 1.65193 1.76452 0.93937 0.90666 0.93358 0.89688 0.93918 0.97878 0.94528 0.92937 0.93565 0.87150 0.82766 0.82917 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 9.26 37.16 0.34 -2.70 16 2 C 0.06 1.00 5.64 -3.82 -0.02 0.98 16 3 N -0.52 -10.67 3.95 -237.51 -0.94 -11.61 16 4 C 0.19 4.86 4.50 -4.98 -0.02 4.84 16 5 C -0.50 -13.91 8.41 -34.44 -0.29 -14.20 16 6 H 0.06 1.66 7.34 -52.49 -0.39 1.28 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.07 1.17 3.93 -4.97 -0.02 1.15 16 14 C -0.04 -0.53 4.58 -104.48 -0.48 -1.01 16 15 C -0.07 -0.76 8.82 -39.28 -0.35 -1.10 16 16 C -0.13 -1.03 10.11 -39.44 -0.40 -1.43 16 17 C 0.11 1.03 11.18 -17.55 -0.20 0.83 16 18 N -0.44 -6.46 10.05 -10.29 -0.10 -6.56 16 19 C 0.18 3.07 7.76 -146.20 -1.13 1.94 16 20 N 0.03 0.52 4.45 32.87 0.15 0.67 16 21 O -0.09 -1.96 14.74 -29.46 -0.43 -2.40 16 22 O -0.16 -3.29 19.03 -29.46 -0.56 -3.85 16 23 H 0.04 0.59 6.11 -51.93 -0.32 0.27 16 24 H 0.07 1.46 6.31 -51.93 -0.33 1.13 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.74 6.98 -51.93 -0.36 1.38 16 27 H 0.04 0.68 6.47 -51.93 -0.34 0.35 16 28 H 0.00 0.09 6.01 -51.92 -0.31 -0.22 16 29 H 0.04 1.00 7.92 -51.93 -0.41 0.59 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.05 0.71 5.98 -51.93 -0.31 0.40 16 32 H 0.11 2.03 5.67 -51.93 -0.29 1.73 16 33 H 0.15 1.26 7.84 -52.49 -0.41 0.85 16 34 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -32.45 295.21 -8.26 -40.71 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -3.87 Total: -3.43 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -2.66 Total: -9.17 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.16 Total: -43.09 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.99 Total: -6.25 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.45 -8.26 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886030539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.921 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds