Wall clock time and date at job start Mon Mar 30 2020 00:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46909 * 109.46963 * 2 1 4 4 C 1.46894 * 110.99821 * 299.20880 * 3 2 1 5 5 C 1.50697 * 109.47599 * 293.45355 * 4 3 2 6 6 H 1.08002 * 119.99893 * 354.95958 * 5 4 3 7 7 C 1.37876 * 120.00307 * 174.97093 * 5 4 3 8 8 N 1.31510 * 120.00053 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46915 * 59.99538 * 9 7 5 11 11 H 1.48499 * 109.47008 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46946 * 299.99573 * 9 7 5 13 13 C 1.46901 * 110.99778 * 63.16453 * 3 2 1 14 14 C 1.50704 * 109.47165 * 66.04648 * 13 3 2 15 15 C 1.38665 * 120.41638 * 259.99896 * 14 13 3 16 16 C 1.38630 * 118.41745 * 180.23018 * 15 14 13 17 17 C 1.38229 * 119.16092 * 359.52346 * 16 15 14 18 18 N 1.31853 * 120.75999 * 0.48802 * 17 16 15 19 19 C 1.31882 * 121.72977 * 359.73832 * 18 17 16 20 20 N 1.48013 * 119.61493 * 179.97438 * 19 18 17 21 21 O 1.21811 * 119.99618 * 180.02562 * 20 19 18 22 22 O 1.21792 * 120.00646 * 0.02636 * 20 19 18 23 23 H 1.08999 * 109.46887 * 300.50724 * 1 2 3 24 24 H 1.08990 * 109.47166 * 60.51553 * 1 2 3 25 25 H 1.09001 * 109.46542 * 180.51760 * 1 2 3 26 26 H 1.09003 * 109.47258 * 240.00159 * 2 1 3 27 27 H 1.09002 * 109.47734 * 120.00272 * 2 1 3 28 28 H 1.09007 * 109.47361 * 53.45390 * 4 3 2 29 29 H 1.09001 * 109.47158 * 173.44865 * 4 3 2 30 30 H 0.97001 * 120.00149 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46850 * 306.04755 * 13 3 2 32 32 H 1.08998 * 109.46711 * 186.04756 * 13 3 2 33 33 H 1.07998 * 120.79243 * 359.95529 * 15 14 13 34 34 H 1.07998 * 120.41924 * 179.73191 * 16 15 14 35 35 H 1.07998 * 119.61562 * 180.25277 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5641 2.1044 -1.1970 5 6 2.2117 1.5065 -2.4193 6 1 2.9546 0.7300 -2.3117 7 6 1.8560 1.9509 -3.6751 8 7 0.9512 2.8962 -3.8063 9 14 2.6593 1.2101 -5.1903 10 1 2.3830 -0.2483 -5.2341 11 1 2.1071 1.8550 -6.4086 12 1 4.1261 1.4345 -5.1325 13 6 1.6114 2.0877 1.2238 14 6 2.2967 1.4652 2.4129 15 6 1.6200 0.5638 3.2206 16 6 2.2887 0.0199 4.3064 17 6 3.6016 0.3839 4.5402 18 7 4.2136 1.2444 3.7505 19 6 3.6073 1.7851 2.7116 20 7 4.3389 2.7465 1.8565 21 8 3.7855 3.2504 0.8954 22 8 5.4942 3.0338 2.1136 23 1 -0.3633 0.5217 0.8854 24 1 -0.3633 0.5058 -0.8945 25 1 -0.3632 -1.0277 0.0093 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.4806 2.0196 -1.2816 29 1 1.8410 3.1556 -1.1165 30 1 0.7007 3.2085 -4.6898 31 1 0.5310 2.0089 1.3447 32 1 1.8932 3.1381 1.1507 33 1 0.5951 0.2953 3.0116 34 1 1.7914 -0.6820 4.9593 35 1 4.1308 -0.0385 5.3815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886030539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:52 Heat of formation + Delta-G solvation = 35.459688 kcal Electronic energy + Delta-G solvation = -20597.575930 eV Core-core repulsion = 17406.181033 eV Total energy + Delta-G solvation = -3191.394897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.24944 -41.42013 -39.02907 -37.50354 -34.96150 -34.01086 -33.46033 -31.07335 -29.45761 -27.98662 -26.48133 -25.04059 -24.22895 -23.54925 -21.20640 -20.34149 -19.60221 -18.56780 -18.35186 -17.84388 -16.96728 -16.78511 -16.51188 -15.96667 -15.74266 -15.14147 -14.69788 -14.48683 -14.21123 -13.71338 -13.47831 -13.22786 -13.07527 -12.76231 -12.57946 -12.48157 -12.43429 -12.14845 -12.01091 -11.74296 -11.48389 -11.29186 -11.15150 -10.96410 -10.60233 -10.53595 -8.90551 -8.15087 -6.22795 -1.29084 -0.15701 0.22347 0.33937 1.39578 1.43457 1.50577 2.31191 2.43228 2.98278 3.17714 3.22411 3.33222 3.64051 3.70953 3.92171 4.18479 4.24863 4.37166 4.47326 4.61714 4.71136 4.75187 4.84458 4.96076 5.03964 5.14164 5.25598 5.43123 5.44832 5.53099 5.69516 6.12214 6.16316 6.39772 6.65221 6.69878 6.91744 7.45037 8.95061 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.023851 B = 0.006175 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.654950 B = 4533.283195 C = 5187.762145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 N -0.534 5.534 4 C 0.215 3.785 5 C -0.516 4.516 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.277 1.277 13 C 0.073 3.927 14 C -0.044 4.044 15 C -0.071 4.071 16 C -0.087 4.087 17 C 0.113 3.887 18 N -0.470 5.470 19 C 0.150 3.850 20 N 0.029 4.971 21 O -0.147 6.147 22 O -0.183 6.183 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.074 0.926 28 H -0.011 1.011 29 H -0.001 1.001 30 H 0.263 0.737 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.187 0.813 34 H 0.215 0.785 35 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 -9.674 19.849 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.071 4.071 3 N -0.258 5.258 4 C 0.089 3.911 5 C -0.554 4.554 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.203 1.203 13 C -0.055 4.055 14 C -0.049 4.049 15 C -0.097 4.097 16 C -0.106 4.106 17 C -0.049 4.049 18 N -0.183 5.183 19 C -0.064 4.064 20 N 0.544 4.456 21 O -0.361 6.361 22 O -0.395 6.395 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.007 0.993 29 H 0.017 0.983 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.204 0.796 34 H 0.231 0.769 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.875 -9.741 20.211 22.514 hybrid contribution -0.763 0.428 -1.759 1.965 sum -2.638 -9.313 18.452 20.837 Atomic orbital electron populations 1.22267 0.97218 1.02654 1.01483 1.22042 0.93900 0.89984 1.01126 1.62142 1.59985 1.02569 1.01118 1.19320 0.92920 0.92525 0.86334 1.21337 1.22106 1.20615 0.91388 0.93104 1.25747 0.95790 0.95629 1.01973 1.70052 1.33022 1.29892 1.24151 0.85594 0.78594 0.78829 0.78521 1.19177 1.20620 1.20268 1.21341 0.97514 0.99171 0.87433 1.20746 0.91089 0.95843 0.97237 1.22182 1.02591 0.92190 0.92746 1.23195 0.94455 0.97231 0.95730 1.23739 0.93528 0.90696 0.96913 1.66403 1.39838 1.09345 1.02712 1.21278 0.90335 0.99152 0.95680 1.43921 1.00752 1.00439 1.00517 1.94673 1.69303 1.54114 1.18007 1.94455 1.02429 1.65979 1.76601 0.91243 0.94748 0.90470 0.92775 0.90782 0.99315 0.98287 0.92813 0.91551 0.89814 0.79551 0.76857 0.76295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.40 9.26 71.98 0.67 -4.74 16 2 C 0.06 2.04 5.64 86.30 0.49 2.53 16 3 N -0.53 -22.75 3.95 -905.35 -3.57 -26.32 16 4 C 0.21 11.41 4.50 85.56 0.38 11.80 16 5 C -0.52 -29.93 8.41 25.60 0.22 -29.72 16 6 H 0.05 2.97 7.34 -2.91 -0.02 2.94 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 C 0.07 2.55 3.93 85.56 0.34 2.88 16 14 C -0.04 -1.21 4.58 -19.77 -0.09 -1.30 16 15 C -0.07 -1.09 8.82 22.47 0.20 -0.89 16 16 C -0.09 -0.74 10.11 22.36 0.23 -0.52 16 17 C 0.11 1.58 11.18 84.69 0.95 2.53 16 18 N -0.47 -12.94 10.05 -186.48 -1.87 -14.82 16 19 C 0.15 5.00 7.76 129.63 1.01 6.01 16 20 N 0.03 1.22 4.45 -49.92 -0.22 1.00 16 21 O -0.15 -6.88 14.74 18.87 0.28 -6.60 16 22 O -0.18 -7.99 19.03 18.90 0.36 -7.63 16 23 H 0.07 1.71 6.11 -2.39 -0.01 1.69 16 24 H 0.03 1.33 6.31 -2.39 -0.02 1.31 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.05 2.24 6.98 -2.39 -0.02 2.22 16 27 H 0.07 2.15 6.47 -2.39 -0.02 2.14 16 28 H -0.01 -0.59 6.01 -2.38 -0.01 -0.61 16 29 H 0.00 -0.06 7.92 -2.39 -0.02 -0.08 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.07 1.97 5.98 -2.39 -0.01 1.96 16 32 H 0.08 3.35 5.67 -2.39 -0.01 3.34 16 33 H 0.19 1.73 7.84 -2.91 -0.02 1.71 16 34 H 0.21 -0.57 8.06 -2.91 -0.02 -0.59 16 35 H 0.22 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -79.61 295.21 3.24 -76.37 By element: Atomic # 1 Polarization: -4.05 SS G_CDS: 1.12 Total: -2.93 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 4.84 Total: -10.58 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -5.38 Total: -96.44 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.64 Total: -14.23 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -79.61 3.24 -76.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886030539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.828 kcal (2) G-P(sol) polarization free energy of solvation -79.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds