Wall clock time and date at job start Mon Mar 30 2020 00:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54319 * 110.87401 * 123.25036 * 2 1 3 5 5 N 1.47018 * 107.27536 * 140.62577 * 4 2 1 6 6 C 1.34774 * 125.65557 * 181.09314 * 5 4 2 7 7 O 1.21621 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.47412 * 120.00512 * 179.97438 * 6 5 4 9 9 C 1.36091 * 126.45022 * 179.71666 * 8 6 5 10 10 O 1.34261 * 106.95127 * 179.90394 * 9 8 6 11 11 C 1.34056 * 108.22540 * 0.35666 * 10 9 8 12 12 N 1.29930 * 109.23953 * 359.77637 * 11 10 9 13 13 C 1.47422 * 108.70074 * 1.05815 * 5 4 2 14 14 C 1.54912 * 104.83500 * 335.87099 * 13 5 4 15 15 H 1.09004 * 111.03866 * 155.09187 * 14 13 5 16 16 N 1.46501 * 111.00592 * 278.93728 * 14 13 5 17 17 C 1.36932 * 119.99720 * 267.19443 * 16 14 13 18 18 H 1.08009 * 120.00252 * 359.97438 * 17 16 14 19 19 C 1.38817 * 120.00195 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99413 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00241 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46856 * 90.00149 * 21 19 17 23 23 H 1.48503 * 109.47248 * 209.99901 * 21 19 17 24 24 H 1.48502 * 109.47541 * 330.00257 * 21 19 17 25 25 H 1.09006 * 109.47176 * 180.70018 * 1 2 3 26 26 H 1.09005 * 109.47062 * 300.69701 * 1 2 3 27 27 H 1.08998 * 109.47130 * 60.69940 * 1 2 3 28 28 H 1.09001 * 109.88349 * 260.04422 * 4 2 1 29 29 H 1.09003 * 109.88537 * 21.20839 * 4 2 1 30 30 H 1.08003 * 126.52710 * 0.03352 * 9 8 6 31 31 H 1.07997 * 125.37835 * 179.80556 * 11 10 9 32 32 H 1.09003 * 110.37241 * 217.03467 * 13 5 4 33 33 H 1.09001 * 110.37136 * 94.70997 * 13 5 4 34 34 H 0.97001 * 119.99779 * 87.18834 * 16 14 13 35 35 H 0.97000 * 119.99503 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 1.2058 5 7 3.2494 -1.5470 0.7353 6 6 3.9997 -2.3796 1.4839 7 8 3.7279 -2.5546 2.6564 8 6 5.1497 -3.0780 0.8817 9 6 5.9942 -3.9383 1.5131 10 8 6.8928 -4.3442 0.6019 11 6 6.6118 -3.7408 -0.5617 12 7 5.5702 -2.9794 -0.4086 13 6 3.4651 -1.2447 -0.6914 14 6 2.0789 -0.7934 -1.2152 15 1 2.1813 -0.1491 -2.0884 16 7 1.2293 -1.9486 -1.5152 17 6 1.2036 -2.4691 -2.7815 18 1 1.8093 -2.0277 -3.5592 19 6 0.3990 -3.5640 -3.0657 20 7 -0.3387 -4.1022 -2.1178 21 14 0.3634 -4.2736 -4.7932 22 1 1.4076 -5.3220 -4.9193 23 1 -0.9710 -4.8699 -5.0560 24 1 0.6253 -3.1931 -5.7777 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3633 0.5246 0.8837 27 1 -0.3633 0.5029 -0.8962 28 1 2.3775 -0.1016 1.9963 29 1 1.3191 -1.4773 1.5770 30 1 5.9489 -4.2391 2.5495 31 1 7.1638 -3.8679 -1.4812 32 1 3.7992 -2.1364 -1.2219 33 1 4.1929 -0.4409 -0.8031 34 1 0.6851 -2.3448 -0.8167 35 1 -0.9006 -4.8675 -2.3163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054469517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:26 Heat of formation + Delta-G solvation = 13.778405 kcal Electronic energy + Delta-G solvation = -20449.262881 eV Core-core repulsion = 17256.927813 eV Total energy + Delta-G solvation = -3192.335068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.33235 -39.58109 -37.48113 -34.79976 -33.79230 -32.24209 -30.47270 -30.22639 -27.68563 -26.48510 -23.94664 -23.48485 -22.60244 -21.66106 -19.67301 -19.18292 -17.71615 -17.22762 -16.67806 -16.34120 -15.77384 -15.28730 -14.80635 -14.41942 -14.10437 -13.66192 -13.50651 -12.98248 -12.91085 -12.57406 -12.08578 -11.90336 -11.53796 -11.24891 -11.08537 -10.90790 -10.79239 -10.59216 -10.29777 -10.14694 -9.90140 -9.83664 -9.59672 -9.12786 -8.96598 -8.15479 -6.96956 -5.78177 -3.07050 1.21466 2.19680 2.72807 3.31010 3.41985 3.47143 3.49015 3.59348 4.13327 4.56979 4.79929 4.91456 5.13630 5.27212 5.38331 5.57148 5.62901 5.65178 5.72527 5.85632 5.96567 6.04714 6.11657 6.30004 6.32096 6.42397 6.46792 6.67765 6.71081 6.96578 7.02115 7.53276 7.68986 7.92109 8.39598 8.44375 9.51235 10.07459 10.42314 11.44097 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.007370 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.610305 B = 3798.156863 C = 4995.795732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.583 5.583 6 C 0.609 3.391 7 O -0.555 6.555 8 C -0.057 4.057 9 C 0.004 3.996 10 O -0.204 6.204 11 C 0.171 3.829 12 N -0.451 5.451 13 C 0.072 3.928 14 C 0.168 3.832 15 H 0.074 0.926 16 N -0.708 5.708 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.281 1.281 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.228 0.772 31 H 0.253 0.747 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.386 0.614 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.879 4.972 4.642 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.136 4.136 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.313 5.313 6 C 0.397 3.603 7 O -0.435 6.435 8 C -0.177 4.177 9 C -0.070 4.070 10 O -0.089 6.089 11 C -0.058 4.058 12 N -0.180 5.180 13 C -0.054 4.054 14 C 0.056 3.944 15 H 0.092 0.908 16 N -0.348 5.348 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.207 1.207 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.244 0.756 31 H 0.269 0.731 32 H 0.123 0.877 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.483 5.150 4.615 13.405 hybrid contribution 0.166 -1.094 -0.347 1.160 sum 11.649 4.056 4.268 13.052 Atomic orbital electron populations 1.21594 0.93430 1.03216 1.00605 1.22552 0.97104 0.98514 0.95437 0.90322 1.22003 0.87499 0.94398 0.96694 1.48088 1.28402 1.42315 1.12537 1.16356 0.80708 0.78546 0.84687 1.90780 1.71520 1.65445 1.15760 1.21754 1.01046 1.04207 0.90656 1.25199 0.88918 0.97149 0.95709 1.84412 1.47678 1.56827 1.20009 1.28214 0.95507 0.92281 0.89769 1.70967 1.10070 1.20526 1.16397 1.23631 0.99926 1.02125 0.79681 1.21429 0.88872 0.89863 0.94260 0.90847 1.42348 1.49780 1.32521 1.10182 1.19242 1.20958 1.09627 0.87317 0.91014 1.24740 0.99633 0.98798 0.97561 1.69669 1.31057 1.25457 1.31630 0.86204 0.76831 0.78998 0.84205 1.21848 1.21860 1.20713 0.91101 0.93834 0.92221 0.92163 0.91251 0.75592 0.73142 0.87735 0.92931 0.77882 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.76 37.16 0.33 -1.80 16 2 C -0.12 -1.87 3.41 -88.78 -0.30 -2.17 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 2.01 6.46 -3.07 -0.02 1.99 16 5 N -0.58 -10.98 3.33 -171.79 -0.57 -11.55 16 6 C 0.61 11.80 7.85 -12.53 -0.10 11.70 16 7 O -0.56 -11.63 17.22 5.26 0.09 -11.54 16 8 C -0.06 -0.95 6.81 -83.02 -0.57 -1.52 16 9 C 0.00 0.05 11.95 29.96 0.36 0.41 16 10 O -0.20 -2.41 10.73 6.49 0.07 -2.34 16 11 C 0.17 1.97 13.19 51.96 0.69 2.66 16 12 N -0.45 -7.13 8.44 -11.49 -0.10 -7.22 16 13 C 0.07 1.32 5.83 -2.53 -0.01 1.31 16 14 C 0.17 3.23 3.47 -65.78 -0.23 3.00 16 15 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 16 N -0.71 -17.09 4.58 -51.34 -0.23 -17.33 16 17 C -0.24 -6.45 9.96 -15.06 -0.15 -6.60 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 19 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.85 13.06 55.49 0.72 -27.12 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.07 1.37 6.44 -51.93 -0.33 1.03 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 30 H 0.23 2.30 8.06 -52.48 -0.42 1.88 16 31 H 0.25 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.10 2.18 6.15 -51.93 -0.32 1.86 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.39 10.14 6.36 -40.82 -0.26 9.88 16 35 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -33.32 299.22 -4.88 -38.20 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.24 Total: 8.74 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -0.11 Total: 8.57 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.18 Total: -63.23 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.16 Total: -13.88 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.32 -4.88 -38.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054469517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.976 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds