Wall clock time and date at job start Mon Mar 30 2020 00:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54319 * 110.87401 * 123.25036 * 2 1 3 5 5 N 1.47018 * 107.27536 * 140.62577 * 4 2 1 6 6 C 1.34774 * 125.65557 * 181.09314 * 5 4 2 7 7 O 1.21621 * 119.99758 * 359.97438 * 6 5 4 8 8 C 1.47412 * 120.00512 * 179.97438 * 6 5 4 9 9 C 1.36091 * 126.45022 * 179.71666 * 8 6 5 10 10 O 1.34261 * 106.95127 * 179.90394 * 9 8 6 11 11 C 1.34056 * 108.22540 * 0.35666 * 10 9 8 12 12 N 1.29930 * 109.23953 * 359.77637 * 11 10 9 13 13 C 1.47422 * 108.70074 * 1.05815 * 5 4 2 14 14 C 1.54912 * 104.83500 * 335.87099 * 13 5 4 15 15 H 1.09004 * 111.03866 * 155.09187 * 14 13 5 16 16 N 1.46501 * 111.00592 * 278.93728 * 14 13 5 17 17 C 1.36932 * 119.99720 * 267.19443 * 16 14 13 18 18 H 1.08009 * 120.00252 * 359.97438 * 17 16 14 19 19 C 1.38817 * 120.00195 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99413 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00241 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46856 * 90.00149 * 21 19 17 23 23 H 1.48503 * 109.47248 * 209.99901 * 21 19 17 24 24 H 1.48502 * 109.47541 * 330.00257 * 21 19 17 25 25 H 1.09006 * 109.47176 * 180.70018 * 1 2 3 26 26 H 1.09005 * 109.47062 * 300.69701 * 1 2 3 27 27 H 1.08998 * 109.47130 * 60.69940 * 1 2 3 28 28 H 1.09001 * 109.88349 * 260.04422 * 4 2 1 29 29 H 1.09003 * 109.88537 * 21.20839 * 4 2 1 30 30 H 1.08003 * 126.52710 * 0.03352 * 9 8 6 31 31 H 1.07997 * 125.37835 * 179.80556 * 11 10 9 32 32 H 1.09003 * 110.37241 * 217.03467 * 13 5 4 33 33 H 1.09001 * 110.37136 * 94.70997 * 13 5 4 34 34 H 0.97001 * 119.99779 * 87.18834 * 16 14 13 35 35 H 0.97000 * 119.99503 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0799 -0.7906 1.2058 5 7 3.2494 -1.5470 0.7353 6 6 3.9997 -2.3796 1.4839 7 8 3.7279 -2.5546 2.6564 8 6 5.1497 -3.0780 0.8817 9 6 5.9942 -3.9383 1.5131 10 8 6.8928 -4.3442 0.6019 11 6 6.6118 -3.7408 -0.5617 12 7 5.5702 -2.9794 -0.4086 13 6 3.4651 -1.2447 -0.6914 14 6 2.0789 -0.7934 -1.2152 15 1 2.1813 -0.1491 -2.0884 16 7 1.2293 -1.9486 -1.5152 17 6 1.2036 -2.4691 -2.7815 18 1 1.8093 -2.0277 -3.5592 19 6 0.3990 -3.5640 -3.0657 20 7 -0.3387 -4.1022 -2.1178 21 14 0.3634 -4.2736 -4.7932 22 1 1.4076 -5.3220 -4.9193 23 1 -0.9710 -4.8699 -5.0560 24 1 0.6253 -3.1931 -5.7777 25 1 -0.3634 -1.0276 0.0126 26 1 -0.3633 0.5246 0.8837 27 1 -0.3633 0.5029 -0.8962 28 1 2.3775 -0.1016 1.9963 29 1 1.3191 -1.4773 1.5770 30 1 5.9489 -4.2391 2.5495 31 1 7.1638 -3.8679 -1.4812 32 1 3.7992 -2.1364 -1.2219 33 1 4.1929 -0.4409 -0.8031 34 1 0.6851 -2.3448 -0.8167 35 1 -0.9006 -4.8675 -2.3163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054469517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:26 Heat of formation + Delta-G solvation = -11.528820 kcal Electronic energy + Delta-G solvation = -20450.360285 eV Core-core repulsion = 17256.927813 eV Total energy + Delta-G solvation = -3193.432472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.35388 -41.02610 -38.98327 -35.93270 -35.59508 -33.79921 -32.24321 -31.34600 -29.34567 -27.82865 -25.79554 -24.87195 -23.59053 -23.08255 -20.93011 -20.65555 -19.44092 -18.66508 -17.74828 -17.68847 -17.21659 -16.58892 -16.39064 -15.74984 -15.68369 -15.31125 -14.67745 -14.60899 -14.43585 -14.03793 -13.55481 -13.40326 -13.03231 -12.89809 -12.79385 -12.39000 -12.27013 -12.15036 -12.04837 -11.61733 -11.49219 -11.32797 -11.27785 -10.88691 -10.23366 -9.64115 -8.93439 -7.90682 -5.18260 0.11497 1.11653 1.48424 1.49400 1.57933 1.73328 2.02656 2.25980 2.58298 3.10129 3.40829 3.54723 3.84572 3.90027 3.92768 3.98375 4.12287 4.44125 4.55067 4.61193 4.66163 4.71304 4.79430 4.90954 5.00321 5.02382 5.14401 5.25429 5.30798 5.51811 5.56294 5.61305 6.30167 6.42140 6.55023 7.02006 7.36990 8.12452 8.35464 9.32816 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.007370 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.610305 B = 3798.156863 C = 4995.795732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.100 4.100 3 H 0.117 0.883 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.599 3.401 7 O -0.584 6.584 8 C -0.102 4.102 9 C 0.027 3.973 10 O -0.196 6.196 11 C 0.193 3.807 12 N -0.493 5.493 13 C 0.086 3.914 14 C 0.157 3.843 15 H 0.086 0.914 16 N -0.719 5.719 17 C -0.230 4.230 18 H 0.082 0.918 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.969 3.031 22 H -0.293 1.293 23 H -0.301 1.301 24 H -0.265 1.265 25 H 0.032 0.968 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.252 0.748 31 H 0.301 0.699 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.372 0.628 35 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.855 6.027 3.862 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.120 4.120 3 H 0.136 0.864 4 C -0.008 4.008 5 N -0.321 5.321 6 C 0.388 3.612 7 O -0.466 6.466 8 C -0.220 4.220 9 C -0.047 4.047 10 O -0.081 6.081 11 C -0.036 4.036 12 N -0.221 5.221 13 C -0.039 4.039 14 C 0.046 3.954 15 H 0.104 0.896 16 N -0.358 5.358 17 C -0.362 4.362 18 H 0.100 0.900 19 C -0.269 4.269 20 N -0.623 5.623 21 Si 0.799 3.201 22 H -0.220 1.220 23 H -0.228 1.228 24 H -0.189 1.189 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.268 0.732 31 H 0.316 0.684 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.204 0.796 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.495 6.267 3.815 15.360 hybrid contribution -0.338 -1.385 -0.080 1.428 sum 13.157 4.882 3.735 14.522 Atomic orbital electron populations 1.21516 0.93636 1.01126 1.01957 1.22533 0.96807 0.99670 0.92976 0.86450 1.22085 0.86722 0.94242 0.97790 1.48231 1.28641 1.42518 1.12667 1.16836 0.81379 0.78392 0.84584 1.90738 1.72622 1.66408 1.16853 1.21623 1.01882 1.06565 0.91948 1.25626 0.87500 0.95039 0.96566 1.84467 1.47058 1.56515 1.20043 1.29259 0.93967 0.89780 0.90564 1.70883 1.12131 1.22868 1.16242 1.23396 0.99475 1.01775 0.79250 1.21722 0.88769 0.88775 0.96098 0.89639 1.42498 1.50453 1.33829 1.08985 1.19666 1.19313 1.08754 0.88475 0.90004 1.25513 1.00390 0.99996 1.01046 1.69844 1.32675 1.26169 1.33597 0.85188 0.75994 0.78383 0.80496 1.22012 1.22839 1.18920 0.94900 0.91012 0.92228 0.90156 0.93739 0.73167 0.68433 0.90068 0.90474 0.79551 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.76 71.98 0.63 -3.32 16 2 C -0.10 -3.05 3.41 -9.61 -0.03 -3.08 16 3 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 4 C 0.11 3.87 6.46 86.73 0.56 4.43 16 5 N -0.59 -22.12 3.33 -815.67 -2.71 -24.84 16 6 C 0.60 23.36 7.85 86.66 0.68 24.04 16 7 O -0.58 -24.85 17.22 -4.10 -0.07 -24.92 16 8 C -0.10 -3.37 6.81 40.40 0.28 -3.09 16 9 C 0.03 0.68 11.95 67.32 0.80 1.48 16 10 O -0.20 -4.11 10.73 0.29 0.00 -4.11 16 11 C 0.19 3.92 13.19 130.52 1.72 5.64 16 12 N -0.49 -14.94 8.44 -305.16 -2.58 -17.51 16 13 C 0.09 3.08 5.83 86.86 0.51 3.59 16 14 C 0.16 5.83 3.47 46.39 0.16 6.00 16 15 H 0.09 2.99 8.09 -2.38 -0.02 2.97 16 16 N -0.72 -35.01 4.58 -316.35 -1.45 -36.46 16 17 C -0.23 -12.34 9.96 84.04 0.84 -11.51 16 18 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 19 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 20 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 21 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 25 H 0.03 1.29 6.44 -2.38 -0.02 1.27 16 26 H 0.07 1.84 8.14 -2.38 -0.02 1.83 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.04 1.72 7.81 -2.39 -0.02 1.70 16 30 H 0.25 4.66 8.06 -2.91 -0.02 4.63 16 31 H 0.30 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.08 3.35 6.15 -2.39 -0.01 3.34 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.37 20.20 6.36 -92.71 -0.59 19.61 16 35 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -74.46 299.22 2.64 -71.82 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.53 Total: 27.57 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 6.61 Total: 20.23 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -6.45 Total: -138.49 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.07 Total: -29.02 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.46 2.64 -71.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054469517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.287 kcal (2) G-P(sol) polarization free energy of solvation -74.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds