Wall clock time and date at job start Mon Mar 30 2020 00:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.91652 * 2 1 4 4 C 1.54913 * 111.00119 * 236.10185 * 2 1 3 5 5 N 1.47431 * 104.83095 * 204.91468 * 4 2 1 6 6 C 1.36934 * 125.64769 * 204.09544 * 5 4 2 7 7 H 1.07999 * 120.00314 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99833 * 180.02562 * 6 5 4 9 9 N 1.31621 * 119.99909 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99842 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47188 * 89.99873 * 10 8 6 12 12 H 1.48502 * 109.46758 * 209.99823 * 10 8 6 13 13 H 1.48500 * 109.47043 * 329.99817 * 10 8 6 14 14 C 1.47025 * 108.69996 * 24.12839 * 5 4 2 15 15 C 1.54317 * 107.27583 * 358.93931 * 14 5 4 16 16 H 1.09001 * 110.72006 * 96.34603 * 15 14 5 17 17 N 1.46492 * 110.72399 * 219.44283 * 15 14 5 18 18 C 1.34777 * 120.00328 * 273.54936 * 17 15 14 19 19 O 1.21610 * 119.99724 * 359.97438 * 18 17 15 20 20 C 1.47422 * 120.00406 * 180.02562 * 18 17 15 21 21 C 1.36084 * 126.45255 * 179.97438 * 20 18 17 22 22 O 1.34252 * 106.95334 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22471 * 359.97438 * 22 21 20 24 24 N 1.29936 * 109.24429 * 0.02562 * 23 22 21 25 25 H 1.09007 * 109.47201 * 296.09522 * 1 2 3 26 26 H 1.09002 * 109.47646 * 56.09379 * 1 2 3 27 27 H 1.09000 * 109.47454 * 176.09947 * 1 2 3 28 28 H 1.08998 * 110.36662 * 86.07916 * 4 2 1 29 29 H 1.08994 * 110.46090 * 323.79908 * 4 2 1 30 30 H 0.96994 * 119.99677 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.88251 * 239.52065 * 14 5 4 32 32 H 1.08997 * 110.01057 * 118.43278 * 14 5 4 33 33 H 0.97010 * 120.00181 * 93.54741 * 17 15 14 34 34 H 1.08000 * 126.52429 * 359.97438 * 21 20 18 35 35 H 1.08001 * 125.37615 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7735 6 6 4.4639 -1.5666 -1.6074 7 1 4.3333 -1.5115 -2.6780 8 6 5.6830 -1.9653 -1.0766 9 7 5.8424 -2.0320 0.2282 10 14 7.0972 -2.4074 -2.2142 11 1 7.9010 -1.1920 -2.5000 12 1 7.9570 -3.4273 -1.5617 13 1 6.5578 -2.9543 -3.4851 14 6 3.4674 -1.2742 0.6959 15 6 2.0862 -0.8080 1.2022 16 1 1.4479 -1.6633 1.4238 17 7 2.2287 0.0494 2.3814 18 6 2.3023 -0.5007 3.6097 19 8 2.2500 -1.7087 3.7389 20 6 2.4451 0.3621 4.7965 21 6 2.5308 -0.0504 6.0904 22 8 2.6509 1.0529 6.8459 23 6 2.6400 2.1199 6.0345 24 7 2.5171 1.7209 4.8040 25 1 -0.3634 0.4521 0.9230 26 1 -0.3634 0.5733 -0.8529 27 1 -0.3634 -1.0253 -0.0699 28 1 2.1559 -0.1719 -2.0837 29 1 1.4524 -1.6703 -1.4044 30 1 6.6944 -2.3103 0.5991 31 1 4.2426 -0.5998 1.0598 32 1 3.6662 -2.2884 1.0422 33 1 2.2701 1.0131 2.2784 34 1 2.5067 -1.0711 6.4426 35 1 2.7207 3.1486 6.3532 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079487719.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:35 Heat of formation + Delta-G solvation = 15.533509 kcal Electronic energy + Delta-G solvation = -20043.948592 eV Core-core repulsion = 16851.689631 eV Total energy + Delta-G solvation = -3192.258961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 265.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.47856 -39.38377 -37.44907 -34.90928 -33.82944 -32.52883 -30.44560 -30.33566 -27.85204 -25.62907 -24.45791 -23.17287 -22.70044 -20.74876 -19.97945 -19.68453 -18.20813 -16.87784 -16.77451 -16.37408 -15.87694 -15.16097 -14.92361 -14.24462 -13.98343 -13.79780 -13.60326 -13.09016 -12.75000 -12.63103 -11.98816 -11.66669 -11.43344 -11.30054 -10.99943 -10.93186 -10.75079 -10.59860 -10.36733 -9.94555 -9.90777 -9.81334 -9.64358 -9.24703 -8.58387 -8.43871 -6.79547 -5.65183 -3.00498 1.11144 2.03907 2.59504 3.39670 3.43673 3.48069 3.50597 3.57649 4.00228 4.53702 4.80504 4.90853 5.13468 5.35122 5.41724 5.48402 5.55336 5.59051 5.79165 5.95143 6.02636 6.05246 6.18966 6.22604 6.38381 6.52888 6.66164 6.79135 6.96866 7.31792 7.60835 7.63584 7.88922 7.95540 8.29639 8.53021 9.25491 9.86355 10.51426 11.45514 Molecular weight = 265.12amu Principal moments of inertia in cm(-1) A = 0.020799 B = 0.005369 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.885321 B = 5213.732384 C = 6098.595524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.119 3.881 16 H 0.088 0.912 17 N -0.692 5.692 18 C 0.597 3.403 19 O -0.535 6.535 20 C -0.064 4.064 21 C 0.010 3.990 22 O -0.203 6.203 23 C 0.172 3.828 24 N -0.465 5.465 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.023 0.977 30 H 0.252 0.748 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.404 0.596 34 H 0.230 0.770 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.629 8.752 10.667 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 H 0.097 0.903 4 C 0.015 3.985 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.743 3.257 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.048 3.952 15 C 0.015 3.985 16 H 0.106 0.894 17 N -0.341 5.341 18 C 0.381 3.619 19 O -0.412 6.412 20 C -0.184 4.184 21 C -0.064 4.064 22 O -0.088 6.088 23 C -0.056 4.056 24 N -0.194 5.194 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.239 0.761 34 H 0.247 0.753 35 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.461 8.187 10.234 16.164 hybrid contribution 0.985 -0.055 0.021 0.987 sum -8.476 8.132 10.254 15.592 Atomic orbital electron populations 1.21702 0.94999 1.01779 1.01032 1.22614 0.94863 0.99611 0.96232 0.90326 1.21589 0.87630 0.95013 0.94297 1.44409 1.07880 1.79215 1.01771 1.19053 0.89344 1.38532 0.88929 0.90296 1.24834 0.97888 1.01736 0.95996 1.69979 1.24122 1.53286 1.09215 0.86117 0.82331 0.77773 0.79521 1.21659 1.21699 1.20663 1.21475 0.89946 1.00462 0.83354 1.22563 1.00497 0.92688 0.82771 0.89369 1.45733 1.72249 1.10813 1.05348 1.16709 0.77038 0.86272 0.81839 1.90836 1.51042 1.13333 1.85968 1.21981 1.11021 0.90121 0.95309 1.25313 1.00212 0.91457 0.89416 1.84424 1.68772 1.15503 1.40115 1.28093 1.00651 0.93741 0.83155 1.70770 1.16423 1.10129 1.22120 0.93096 0.92727 0.92563 0.93954 0.95974 0.93753 0.93141 0.93290 0.76084 0.75337 0.73110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.31 37.16 0.35 -1.55 16 2 C -0.11 -1.97 3.25 -88.47 -0.29 -2.25 16 3 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 4 C 0.14 2.93 6.70 -2.52 -0.02 2.92 16 5 N -0.61 -15.89 3.39 -170.07 -0.58 -16.47 16 6 C -0.23 -6.57 10.28 -15.06 -0.15 -6.72 16 7 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -28.07 10.31 55.49 0.57 -27.50 16 10 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.17 4.44 5.12 -3.07 -0.02 4.42 16 15 C 0.12 2.38 2.70 -66.10 -0.18 2.20 16 16 H 0.09 1.82 7.59 -51.93 -0.39 1.43 16 17 N -0.69 -12.34 5.13 -53.11 -0.27 -12.61 16 18 C 0.60 10.92 7.81 -12.52 -0.10 10.83 16 19 O -0.53 -11.37 16.61 5.27 0.09 -11.28 16 20 C -0.06 -0.96 6.99 -83.02 -0.58 -1.54 16 21 C 0.01 0.11 11.94 29.96 0.36 0.47 16 22 O -0.20 -2.05 10.73 6.51 0.07 -1.98 16 23 C 0.17 1.58 13.19 51.96 0.69 2.26 16 24 N -0.46 -6.11 11.06 -11.48 -0.13 -6.24 16 25 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.02 0.46 7.99 -51.93 -0.41 0.04 16 30 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.05 1.43 7.27 -51.93 -0.38 1.06 16 32 H 0.05 1.44 7.50 -51.93 -0.39 1.05 16 33 H 0.40 6.49 8.25 -40.82 -0.34 6.16 16 34 H 0.23 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.25 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 302.26 15.07 4.55 4.55 Total: -1.00 -35.03 302.26 -5.16 -40.19 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.41 Total: 3.04 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -0.04 Total: 10.71 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.40 Total: -62.82 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.16 Total: -13.26 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.03 -5.16 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079487719.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.724 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds